EBG00000313325 - n.453_465delGTCCGGGTTCTCT
Drug resistance types
64 Sensitive
24 RR-TB
52 HR-TB
16 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 3 |
| lineage4.9 | 116 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage4.4.2 | 1 |
| lineage3.1.1 | 2 |
| lineage2.2.1 | 28 |
| La1;lineage4.1.2 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 1 |
| La1.4 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.8 | 6 |
| lineage4.4.1.1.1 | 2 |
| lineage3 | 5 |
| lineage4.3.4.2 | 1 |
| La3;lineage4.9 | 5 |
| lineage4.3 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage6.1.3 | 2 |
| La1.8.1 | 4 |
| La2 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2 | 3 |
| lineage4.3.2.1 | 2 |
| La1;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.1.1.3 | 4 |
| La1.3 | 3 |
| lineage6 | 1 |
| La1.2.BCG | 1 |
| La3;lineage4 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.6.5 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4 | 3 |
| lineage2.2;lineage4 | 2 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| 1 | |
| lineage4.3.4 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8.1 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 237 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR5818398 | Other | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4769516 | Sensitive | lineage4.9 | None | SRR5818385 | Other | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR3797029 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR26159065 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR13180204 | Other | lineage3 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR5818411 | RR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5818456 | Other | lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | SRR5818425 | Other | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4819863 | RR-TB | lineage4.9 | None | SRR5818445 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR5818440 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR22424765 | HR-TB | lineage4.8 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR26159063 | RR-TB | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6855695 | Sensitive | lineage4.8 | None | SRR5818413 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR3273109 | HR-TB | lineage4 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR5818437 | RR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR5818393 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR6982246 | RR-TB | lineage4.1.2;lineage4.9 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818462 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR9786076 | Other | lineage3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | DRR184629 | Other | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR181887 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | SRR5818436 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR5818386 | Other | lineage4.9 | None | SRR5818426 | Other | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR1183054 | Sensitive | lineage4.9 | None |
|---|
