EBG00000313325 - n.453_465delGTCCGGGTTCTCT
Drug resistance types
101 Sensitive
27 RR-TB
72 HR-TB
22 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
100 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 48 |
| lineage4.6.5 | 2 |
| lineage3.1.1 | 2 |
| lineage1.1.3.1 | 1 |
| lineage3 | 8 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage6 | 2 |
| lineage6.1.3 | 1 |
| 57 | |
| lineage2.2.1 | 33 |
| lineage4.8 | 7 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9 | 101 |
| La1.8.1 | 6 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 3 |
| lineage2 | 1 |
| La2 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4.2.1 | 3 |
| La1.4 | 1 |
| La1.7.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage2.2.2 | 3 |
| lineage3.1.3 | 1 |
| lineage4.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4;lineage2.2 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.3 | 1 |
| lineage4.1.2 | 2 |
| lineage4.8.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| La1.3 | 8 |
| lineage4.9;La1.3 | 2 |
| lineage3.1.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 337 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736875 | HR-TB | lineage4 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9787362 | Sensitive | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787336 | Other | lineage6 | None | SRR10808805 | Sensitive | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172310 | HR-TB | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180204 | Sensitive | lineage3 | None | SRR13888750 | Other | La2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR16156751 | RR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR17832802 | HR-TB | lineage3 | None | SRR16278274 | Other | La1.4 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR21240161 | Sensitive | lineage4.1.2.1 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR21469201 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | SRR8692791 | Other | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814690 | Sensitive | lineage2.2.1 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176740 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | ERR4816470 | Other | lineage3 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675537 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817069 | RR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR2229760 | Other | lineage4.8 | dk | SRR5818386 | Other | None | SRR3675571 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4816711 | Sensitive | lineage4.1.1 | gb | SRR5818426 | Other | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2510804 | Other | lineage2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2513056 | HR-TB | lineage4.1.2.1 | gb | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | SRR5341373 | HR-TB | lineage4 | None | ERR1023509 | Other | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820586 | Other | lineage3 | gb | ERR4819933 | Other | lineage4.9 | None | ERR4821057 | HR-TB | lineage4 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5818445 | Other | None | SRR6045555 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR6045480 | Other | lineage4.1.1 | None | SRR5818385 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818393 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818409 | Other | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818413 | HR-TB | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818436 | Sensitive | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR5818440 | Other | lineage4.9 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818437 | MDR-TB | lineage4.9 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR5818462 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR5818457 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045233 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6511621 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | ERR4831638 | Sensitive | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR9970980 | Other | lineage4.1.2 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185000 | Other | lineage1.1.1.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR323045 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR1063859 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439265 | Other | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4188247 | HR-TB | None | ERR4769408 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769514 | Other | La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769551 | Other | La1.3 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4798431 | HR-TB | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6358979 | Other | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6866022 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None |
|---|
