TB-Profiler result

Run: SRR5818424
Summary

Run ID: SRR5818424

Sample name:

Date: 04-04-2023 11:28:03

Number of reads: 500465

Percentage reads mapped: 98.83

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.3
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.3
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.24
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.58
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.31
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.34
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.68
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 0.23
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.78
rrs 1472282 n.437T>G non_coding_transcript_exon_variant 0.44
rrs 1472284 n.439C>T non_coding_transcript_exon_variant 0.45
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 0.27
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.65
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.26
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.26
rrs 1472293 n.448C>A non_coding_transcript_exon_variant 0.47
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.66
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.27
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.27
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.65
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 0.27
rrs 1472332 n.487A>G non_coding_transcript_exon_variant 0.47
rrs 1472333 n.488G>A non_coding_transcript_exon_variant 0.47
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.47
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.76
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.35
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.75
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.75
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.7
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.71
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.74
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 0.74
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 0.74
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 0.72
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 0.75
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.76
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.76
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.81
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.87
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.89
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.2
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.22
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.22
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.25
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.23
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.14
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.2
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.22
tlyA 1917972 c.33A>G synonymous_variant 1.0
ahpC 2726184 c.-9A>C upstream_gene_variant 0.39
embB 4247646 p.Glu378Ala missense_variant 0.99
ethA 4326439 p.Asn345Lys missense_variant 1.0
ethA 4326764 p.Ala237Val missense_variant 0.32
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407873 c.330G>T synonymous_variant 0.96
gid 4408124 p.Ala27Pro missense_variant 0.99