Run ID: SRR5818424
Sample name:
Date: 04-04-2023 11:28:03
Number of reads: 500465
Percentage reads mapped: 98.83
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472282 | n.437T>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472284 | n.439C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472286 | n.441C>G | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472289 | n.444T>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472290 | n.445C>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472293 | n.448C>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472297 | n.453_465delGTCCGGGTTCTCT | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472324 | n.479G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472325 | n.480G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472328 | n.483G>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472330 | n.485G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472332 | n.487A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472333 | n.488G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472338 | n.493A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472379 | n.534T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 0.74 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ahpC | 2726184 | c.-9A>C | upstream_gene_variant | 0.39 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.99 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
ethA | 4326764 | p.Ala237Val | missense_variant | 0.32 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.96 |
gid | 4408124 | p.Ala27Pro | missense_variant | 0.99 |