EBG00000313325 - n.593T>C
Drug resistance types
74 Sensitive
26 RR-TB
69 HR-TB
22 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
172 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 22 |
| lineage2.2 | 6 |
| 43 | |
| lineage2.2.1 | 32 |
| lineage3 | 29 |
| lineage4.9 | 113 |
| lineage4.4.1.1 | 8 |
| lineage4.1.2.1 | 13 |
| lineage4.3.4 | 1 |
| lineage4.6 | 1 |
| lineage4.5 | 5 |
| lineage3.1.1 | 2 |
| lineage4.8 | 8 |
| lineage4.3 | 1 |
| lineage1.2.2.2 | 3 |
| lineage6 | 3 |
| lineage4.6.1.1 | 2 |
| lineage4.3.3 | 7 |
| La1.8.1 | 5 |
| lineage2.2.1.2 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.2 | 2 |
| lineage4.9;lineage1.1 | 1 |
| La2 | 1 |
| La1.7.1 | 1 |
| lineage4.1.1 | 5 |
| lineage2.2.2 | 2 |
| lineage4.1.1.3 | 5 |
| lineage2.2.1.1 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage3.1.3 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 2 |
| lineage1.1.2 | 4 |
| lineage4.4.2 | 3 |
| lineage4.4.1 | 1 |
| lineage4.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage3.1.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage4.2.1 | 1 |
| lineage4.6.2.2 | 1 |
| La3 | 1 |
| lineage6.1.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.7 | 4 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.8.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.1 | 1 |
| lineage4.1.4 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.2.2 | 1 |
| La1 | 1 |
| La1.2 | 2 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 379 |
Geographic prevalence
Country level data for this variant is available for 35 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798823 | HR-TB | lineage4 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800013 | Pre-XDR-TB | lineage3 | in | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6197022 | Other | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR736831 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117788 | Other | lineage3 | None | ERR9119669 | HR-TB | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9787030 | Sensitive | lineage6 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR11462861 | Other | La1.8.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR12006547 | Sensitive | lineage1.2.1.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1187393 | Other | lineage4.1.2 | ca | SRR12199457 | Sensitive | lineage4.9;lineage1.1 | None | SRR13888750 | Other | La2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1791725 | Other | La1.8.1 | None | SRR14782405 | HR-TB | None | SRR16156775 | Other | lineage4.9 | None | SRR16370694 | Sensitive | lineage4.1.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213726 | Other | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19233762 | Sensitive | lineage4.1.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4 | None | SRR19304094 | Other | lineage6 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR3675230 | RR-TB | lineage3 | None | ERR176779 | HR-TB | None | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR22424851 | MDR-TB | lineage4.3.3 | None | ERR176778 | HR-TB | None | ERR4815310 | Other | None | ERR4814690 | Sensitive | lineage2.2.1 | None | ERR1750943 | Sensitive | lineage4 | None | ERR1750908 | Sensitive | lineage4 | None | ERR1750938 | Other | lineage4.4.1 | None | ERR181824 | HR-TB | lineage4 | None | ERR4815502 | Other | lineage4.1 | None | SRR3675265 | Other | lineage4 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4814976 | Other | lineage4.9 | None | ERR4814905 | Other | lineage4.8 | gb | ERR4815550 | Other | lineage4 | None | SRR3675270 | HR-TB | None | ERR176651 | HR-TB | None | SRR5818419 | Sensitive | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR181887 | HR-TB | None | ERR4814994 | HR-TB | lineage2.2.1 | gb | ERR2027250 | Other | lineage3.1.2 | None | SRR3675509 | Other | lineage4.9 | None | ERR4815994 | Other | lineage3 | gb | ERR4816001 | Other | lineage3 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4 | None | ERR4816322 | Other | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816470 | Other | lineage3 | None | ERR4816417 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR3275709 | HR-TB | lineage3 | nl | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816711 | Sensitive | lineage4.1.1 | gb | ERR4816571 | Other | lineage1.1.2 | None | SRR5818386 | Other | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4816852 | Other | lineage4.9 | None | SRR5818426 | Other | None | ERR4818753 | Other | lineage3 | gb | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818831 | Other | lineage3 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818272 | Other | lineage4.3.2 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR2513259 | Other | lineage3 | None | ERR4818432 | HR-TB | lineage4.5 | gb | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4818489 | Other | lineage1.1.3 | None | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4817555 | RR-TB | lineage3 | None | SRR5818458 | Other | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2513657 | Other | lineage1.2.2.2 | gb | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5074711 | Sensitive | lineage4.3.3 | None | ERR4819171 | Sensitive | lineage1.2.2.2 | gb | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819425 | Other | lineage3 | gb | ERR2514173 | Other | lineage4.5 | gb | ERR2514215 | Other | lineage2.2.1 | gb | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819723 | Other | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | SRR5341456 | Other | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514613 | Other | lineage4.8 | gb | ERR6359082 | Other | lineage4.9 | None | ERR4820833 | HR-TB | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR4820130 | Other | lineage3 | None | ERR4820184 | MDR-TB | lineage3 | gb | ERR4820193 | Other | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | ERR4821802 | Other | La3 | gb | SRR6045480 | Other | lineage4.1.1 | None | SRR5818445 | Other | None | SRR5535933 | HR-TB | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821222 | Other | lineage4.3.2.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821288 | Other | lineage4.7 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821519 | Other | lineage3 | gb | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4821725 | Other | lineage4.8.2 | gb | SRR6045642 | Other | lineage3.1.2.2 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR5818385 | Other | lineage4.9 | None | SRR5818391 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818394 | Other | lineage4.9 | None | SRR5818397 | Other | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818396 | Other | lineage4.9 | None | SRR5818400 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818415 | Sensitive | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818406 | Other | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818413 | HR-TB | lineage4.9 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR5818437 | MDR-TB | lineage4.9 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818441 | Other | lineage4.9 | None | SRR5818455 | Sensitive | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | SRR5818442 | Other | lineage4.9 | None | SRR5818456 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818463 | Sensitive | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6046152 | Other | lineage4.9 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818469 | Other | lineage4.9 | None | SRR6045759 | RR-TB | lineage2.2.1 | gb | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045124 | Other | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046250 | Other | lineage4.9 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046299 | HR-TB | None | SRR6046359 | Other | lineage4.7 | None | ERR4829360 | Sensitive | lineage4.7 | None | SRR6046492 | Other | None | SRR6046442 | Other | lineage3 | None | SRR6046463 | Other | lineage4.4.1.1 | None | ERR4828962 | Other | lineage4.1.4 | it | SRR6046534 | Other | lineage1.1.2 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046729 | Other | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR6046878 | HR-TB | lineage4 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR3275190 | Other | lineage3 | nl | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6797497 | Sensitive | lineage4.1.1.3 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7496471 | Sensitive | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR323108 | HR-TB | lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR1023525 | HR-TB | lineage4 | None | ERR323045 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR3283010 | Other | La1 | None | ERR3283021 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR3806588 | Other | lineage6 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769418 | Other | La1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769424 | Sensitive | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4796577 | MDR-TB | None |
|---|
