TB-Profiler result

Run: ERR4829360
Summary

Run ID: ERR4829360

Sample name:

Date: 01-04-2023 19:26:25

Number of reads: 4041646

Percentage reads mapped: 95.4

Strain: lineage4.7

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.7 Euro-American (mainly T) T1;T5 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.14
rrs 1471926 n.81C>T non_coding_transcript_exon_variant 0.13
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.13
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.14
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.14
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.15
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.15
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 0.14
rrs 1472138 n.293C>A non_coding_transcript_exon_variant 0.14
rrs 1472147 n.302G>T non_coding_transcript_exon_variant 0.11
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.11
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.11
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.13
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.13
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.13
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.13
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 0.14
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 0.14
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.14
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.17
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 0.21
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 0.22
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.24
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.27
rrs 1472504 n.659A>T non_coding_transcript_exon_variant 0.26
rrs 1472505 n.660G>A non_coding_transcript_exon_variant 0.27
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.24
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.18
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.16
rrs 1472573 n.728C>T non_coding_transcript_exon_variant 0.16
rrs 1472574 n.729T>A non_coding_transcript_exon_variant 0.16
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.17
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.15
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.16
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.18
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.13
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.11
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.11
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.11
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.12
rrl 1474294 n.637C>G non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.21
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.14
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2222379 c.786G>A synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embB 4249732 c.3219C>G synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0