Run ID: ERR4829360
Sample name:
Date: 01-04-2023 19:26:25
Number of reads: 4041646
Percentage reads mapped: 95.4
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1471926 | n.81C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1471985 | n.140T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472123 | n.278A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472138 | n.293C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472147 | n.302G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472431 | n.586G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472504 | n.659A>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472505 | n.660G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472574 | n.729T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473026 | n.1181T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2222379 | c.786G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |