EBG00000313325 - n.729T>A
Drug resistance types
20 Sensitive
2 RR-TB
51 HR-TB
20 MDR-TB
37 Pre-XDR-TB
0 XDR-TB
74 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 35 |
| La1.7 | 1 |
| lineage4.1.1 | 2 |
| lineage4.1.2.1 | 16 |
| La1.7.1 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage4.8 | 12 |
| lineage1.2.1.2 | 1 |
| lineage4.3.3 | 7 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.2 | 16 |
| 13 | |
| lineage3 | 10 |
| lineage4 | 4 |
| lineage4.9 | 14 |
| lineage3.1.1 | 2 |
| lineage1.1.2 | 1 |
| lineage3.1.2.1 | 2 |
| lineage4.1.1.3 | 5 |
| lineage4.8.2 | 2 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6 | 4 |
| lineage4.1.2 | 1 |
| lineage4.5 | 2 |
| lineage4.8.1 | 1 |
| lineage2.2.1.1 | 3 |
| La3 | 1 |
| La1.8.1 | 4 |
| lineage1.1.3.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.7 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.7;lineage4.3.4.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage2.2 | 20 |
| lineage4.3 | 1 |
| lineage4.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 26 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR17111238 | Other | La1.7 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370694 | Sensitive | lineage4.1.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18053779 | Other | La1.7.1 | None | SRR18213684 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18391760 | Other | La1.7.1 | None | SRR19233762 | Sensitive | lineage4.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4815268 | Other | lineage4.8 | None | SRR22048536 | Other | lineage4.3.3 | None | ERR181733 | Sensitive | lineage4.3.4.2.1 | None | SRR3105797 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR176672 | Sensitive | lineage4.3.4.2.1 | None | ERR192070 | Other | None | ERR4816001 | Other | lineage3 | None | ERR4816186 | Sensitive | lineage3 | gb | ERR4816232 | Other | lineage4 | None | ERR4816417 | Other | lineage4.9 | None | ERR216901 | Other | lineage3.1.1 | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4817398 | Other | lineage3.1.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4817234 | Other | lineage4.1.1.3 | None | ERR4816818 | Other | lineage4.8.2 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4814905 | Other | lineage4.8 | gb | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2229760 | Other | lineage4.8 | dk | ERR4817384 | Sensitive | lineage4.1.1.3 | gb | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR4818050 | Other | lineage4.6.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4819011 | Other | lineage3.1.2.1 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR2515055 | Other | lineage3 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4818212 | Sensitive | lineage4.6 | gb | ERR2432997 | Other | lineage4.8 | None | ERR4818214 | Sensitive | lineage4.1.2.1 | gb | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818432 | HR-TB | lineage4.5 | gb | ERR4818436 | Other | lineage4.8 | None | ERR2513273 | Other | lineage4.1.2.1 | None | ERR4818570 | Other | lineage4.3.3 | None | SAMN02360577 | HR-TB | lineage3 | None | ERR2446397 | Sensitive | lineage4.3.3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819166 | Other | lineage3 | gb | ERR4820729 | Other | lineage2.2.1 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR2514351 | Sensitive | lineage3 | gb | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SRR5217421 | Sensitive | lineage2.2.1 | None | ERR4819723 | Other | None | ERR2514613 | Other | lineage4.8 | gb | ERR2514668 | Other | lineage4.8.1 | gb | ERR4821769 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | ERR4819834 | Other | lineage4.8 | gb | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045420 | Other | lineage4.1.2.1 | gb | ERR4821802 | Other | La3 | gb | ERR2747678 | Other | La1.8.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821371 | Other | lineage4.8 | gb | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821519 | Other | lineage3 | gb | ERR4821718 | Other | lineage4.2.2.2 | gb | SRR6045642 | Other | lineage3.1.2.2 | None | ERR4821725 | Other | lineage4.8.2 | gb | SRR5818466 | Other | lineage4.9 | None | SRR6046250 | Other | lineage4.9 | None | SRR5818660 | Sensitive | lineage4.1.1.3 | dj | SRR6045264 | Sensitive | lineage2.2.1 | None | ERR4829907 | HR-TB | lineage4.1.2.1 | it | SRR6046860 | Other | lineage4.4.1.1 | None | ERR4829360 | Sensitive | lineage4.7 | None | SRR6152838 | Other | lineage2.2.1.1 | ca | ERR4872193 | MDR-TB | lineage4.6 | None | SRR6046602 | HR-TB | lineage4.1.2.1 | gb | SRR6832644 | Other | lineage4.3.3 | None | SRR6650411 | Sensitive | lineage1.1.3.1 | None | SRR7131129 | Sensitive | lineage4.1.2.1 | None | SRR7131035 | Sensitive | lineage4.8 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131296 | Other | lineage4.3.3 | None | SRR7131156 | Other | lineage4.6 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR10796632 | Other | lineage4.3.3 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR3283008 | Other | lineage4.9 | None | ERR3439225 | Other | La1.8.1 | None | ERR3439268 | Sensitive | lineage4.9 | None | ERR473279 | Other | lineage4.9 | None | ERR4188280 | Other | La1.8.1 | None | ERR4586795 | Other | La1.8.1 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR752034 | Sensitive | lineage2.2.1 | None | ERR7821103 | HR-TB | lineage1.1.3.2 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665811 | Pre-XDR-TB | lineage2.2 | None | ERR9119591 | MDR-TB | lineage4.6 | None | ERR9117760 | HR-TB | lineage4.3 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013599 | HR-TB | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013598 | HR-TB | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013617 | MDR-TB | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | MDR-TB | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048982 | HR-TB | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR10869285 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR1173416 | Other | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173720 | Other | lineage4.9 | None |
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