EBG00000313325 - n.81C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
27 Sensitive
16 RR-TB
27 HR-TB
4 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
36 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 50 |
| lineage4.8 | 22 |
| La1.7;lineage4.9 | 4 |
| lineage2.2.1 | 7 |
| lineage3 | 5 |
| La1.2.BCG | 2 |
| lineage4.1.2.1 | 4 |
| lineage2.2.1.1;lineage3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.3.4 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.3 | 2 |
| La1.7.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2 | 1 |
| lineage4.7 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 117 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR736848 | Other | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR978693 | Other | lineage4.8 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR4769452 | Other | lineage4.9 | None | SRR1915485 | Other | La1.2.BCG | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR25827850 | XDR-TB | lineage2.2.1.1;lineage3 | None | ERR176651 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR25827848 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4816571 | Sensitive | lineage1.1.2 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR29231218 | Sensitive | lineage3 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1915487 | Other | La1.2.BCG | None | ERR4821288 | Other | lineage4.7 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR5341356 | MDR-TB | lineage3 | in | ERR926165 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4797458 | Pre-XDR-TB | lineage3 | in | ERR9119669 | HR-TB | lineage4.9 | None | ERR978756 | Other | lineage4.8 | None | SRR786373 | Pre-XDR-TB | lineage3 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR867569 | Other | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR978762 | Other | lineage4.8 | None | ERR181887 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR2600612 | Sensitive | lineage4.8 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4829360 | Sensitive | lineage4.7 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR978752 | Other | lineage4.8 | None | SRR6045548 | Sensitive | lineage4.9 | None |
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