EBG00000313325 - n.590T>C
Drug resistance types
82 Sensitive
31 RR-TB
21 HR-TB
23 MDR-TB
11 Pre-XDR-TB
1 XDR-TB
112 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 112 |
| lineage4 | 3 |
| lineage4.8 | 41 |
| lineage3 | 12 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1 | 20 |
| La1.8.1 | 4 |
| La1.4 | 1 |
| lineage4.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.3 | 7 |
| lineage2.2.1;lineage4.9 | 3 |
| 1 | |
| lineage4.6.1.1 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.2.2 | 4 |
| lineage1.2.1.2.1 | 2 |
| lineage3.1.2.1 | 2 |
| lineage6.1.3 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.3 | 6 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.8.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.7 | 2 |
| lineage4.4.2 | 1 |
| lineage1.1.2 | 1 |
| lineage1.2.1.2 | 1 |
| La1.3 | 4 |
| lineage4.4.1.1.1 | 4 |
| lineage4.2.2 | 1 |
| lineage3.1.2 | 1 |
| La1.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.6.5 | 2 |
| lineage4.4.1.1 | 3 |
| lineage6.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage1.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.2.1 | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 281 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180977 | Sensitive | lineage4.9 | None | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR4820193 | Other | lineage3 | None | ERR4769493 | Other | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | ERR867566 | Other | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | SRR7236330 | Other | La1.8.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR5818408 | Other | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819462 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR5818389 | Other | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR5818411 | RR-TB | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | ERR4796577 | HR-TB | None | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR7236399 | Other | La1.8.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR13248825 | Sensitive | lineage1.2.1.2.1 | None | SRR13180204 | Other | lineage3 | None | ERR4821519 | Other | lineage3 | gb | SRR1172717 | Sensitive | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | SRR6982239 | Sensitive | lineage4.1.1.3 | None | SRR5818415 | Sensitive | lineage4.9 | None | SRR7617847 | Other | La1.8.1 | None | SRR3675552 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR176741 | Other | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | ERR4818272 | Other | lineage4.3.2 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4816569 | Sensitive | lineage4.3.3 | gb | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR6045267 | RR-TB | lineage4.8 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR5818386 | Other | lineage4.9 | None | ERR4829360 | Sensitive | lineage4.7 | None | SRR5818413 | Sensitive | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | ERR4816571 | Sensitive | lineage1.1.2 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR5818397 | Other | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR911929 | Other | lineage4.8 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978735 | Other | lineage4.8 | None | DRR188816 | Sensitive | lineage4.2.2 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR736831 | Other | lineage4.9 | None | ERR2027250 | Other | lineage3.1.2 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR978694 | Other | lineage4.8 | None | SRR12420628 | MDR-TB | lineage2.2.1 | None | SRR5818424 | Sensitive | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818455 | Sensitive | lineage4.9 | None | SRR5818470 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | SRR6046141 | Other | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | SRR5818395 | Sensitive | lineage4.9 | None | ERR4819357 | Sensitive | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5818394 | Other | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR7236374 | Other | La1.8.1 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR867575 | Other | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR5818460 | Other | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR978762 | Other | lineage4.8 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR1063855 | Other | lineage4.9 | None | ERR978748 | Other | lineage4.8 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR911930 | Other | lineage4.8 | None | SRR7496471 | Sensitive | lineage4 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | DRR188753 | Sensitive | lineage1.2.1.2.1 | None | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818466 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4814905 | Sensitive | lineage4.8 | gb | ERR978747 | Other | lineage4.8 | None | SRR5818425 | Other | lineage4.9 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR5818398 | Other | lineage4.9 | None | ERR2514215 | Other | lineage2.2.1 | gb | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR3797065 | RR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6982246 | Sensitive | lineage4.1.2;lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | ERR473334 | HR-TB | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR7069391 | Other | lineage4.9 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR1181214 | Other | lineage4.9 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR26159065 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | SRR5818459 | Other | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | SRR21240055 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR5818414 | Other | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR7069837 | Sensitive | lineage4.1.1.3 | None | SRR7069800 | Other | lineage3.1.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR978752 | Other | lineage4.8 | None | SRR5818385 | Other | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR5818400 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR11342682 | Other | lineage4.1.2 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | SRR1175487 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None |
|---|
