EBG00000313325 - n.590T>C


Drug resistance types
86 Sensitive 40 RR-TB 28 HR-TB 32 MDR-TB 20 Pre-XDR-TB 0 XDR-TB 177 Other
lineage Counts
lineage Count
13
lineage4.9 140
lineage4 23
lineage4.9;lineage2.2 1
lineage4.4.1.1.1 2
lineage2.2 1
lineage2 1
lineage1.2.1.2.1 3
lineage2.2.1 31
lineage3 33
lineage4.9;lineage1.1 1
lineage4.2.2.1 1
lineage4.1.2.1 13
La1.4 1
lineage2.2.2 3
lineage4.1.1 4
lineage4.5 2
lineage4.8 17
lineage2.2.1.1 2
lineage4.1.1.3 5
lineage3.1.3 1
lineage6 4
lineage4.4.2 2
lineage1.2.1.2 1
lineage1.1.1 3
lineage4.3.3 7
lineage1.1.2 6
lineage4.4.1 1
lineage4.1 1
lineage3.1.2.1 1
lineage3.1.2 1
lineage1.2.1.1 1
lineage4.6.2.2 2
lineage4;lineage2 1
lineage4.4.1.1 8
lineage4.3.2 1
lineage4.1.1.3.1 2
lineage4.3.4.2 1
lineage4.3.4.2.1 2
lineage6.1.3 1
lineage4.7 4
lineage4.3.2.1 1
lineage4.2.1 1
lineage1.1.3.1 1
lineage3.1.2.2 1
lineage4.2.2.2 1
lineage3.1.1 2
lineage4.3.1 1
lineage4.3.1.1 1
lineage4.3.4.1 1
lineage4.8.1 1
lineage4.2.2 1
lineage4.6.1.1 2
La1.8.1 3
La1.3 7
La1.2 1
lineage4.9;La1.3 3
lineage4.5;lineage2.2.1 1
lineage4.6.5 2
lineage4.6 1
lineage4.3 1
lineage1.2.2.2 1
lineage4.8;lineage4.3.3 1
spoligotype Counts
spoligotype Count
None 383
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1173740 Other None
SRR1175513 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
SRR1175052 HR-TB lineage4.9 None
SRR1175472 MDR-TB lineage4 None
SRR1175487 Sensitive lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180413 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181402 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1183054 Sensitive lineage4.9 None
SRR1184329 MDR-TB lineage4.9 None
SRR1184021 Sensitive lineage4.9 None
SRR12006547 Sensitive lineage1.2.1.2.1 None
SRR11972417 MDR-TB lineage2.2.1 None
SRR13180204 Sensitive lineage3 None
SRR12199457 Sensitive lineage4.9;lineage1.1 None
SRR13180203 Sensitive lineage4.2.2.1 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16156775 Other lineage4.9 None
SRR16156804 RR-TB lineage4.9 None
SRR16278274 Other La1.4 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR16370694 Sensitive lineage4.1.1 None
SRR18002935 Pre-XDR-TB lineage2.2.1 None
SRR18002981 Other lineage2.2.1 None
SRR18002941 RR-TB lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18002976 Other lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003007 MDR-TB lineage4.5 None
SRR18003023 Other lineage2.2.1 None
SRR18003009 MDR-TB lineage2.2.1 None
SRR18003030 Pre-XDR-TB lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003015 MDR-TB lineage2.2.1 None
SRR18003027 Other lineage2.2.1 None
SRR19233762 Sensitive lineage4.1.1 None
SRR18003031 HR-TB lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18213721 Other lineage4.8 None
SRR18213726 Other lineage3 None
SRR18909918 Other lineage2.2.1.1 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR18003042 Other lineage2.2.1 None
SRR18213736 MDR-TB lineage3 None
SRR18913742 Sensitive lineage3.1.3 None
SRR20632814 Sensitive lineage4 None
SRR19325518 MDR-TB lineage2.2.1 None
SRR19303820 RR-TB lineage4.8 None
SRR19304094 Other lineage6 None
SRR21713567 Sensitive lineage4.5 None
SRR20969542 Other lineage4.4.2 None
SRR21240055 Other lineage4.1.2.1 None
SRR21677886 Sensitive lineage4.9 None
SRR20969475 Other lineage1.2.1.2 None
SRR21658550 Other lineage1.1.1 None
SRR6207283 Sensitive lineage4.3.3 None
SRR22424743 Pre-XDR-TB lineage1.1.2 None
SRR22424851 MDR-TB lineage4.3.3 None
SRR22424765 MDR-TB lineage4 None
SRR22424787 Sensitive lineage4.9 None
SAMEA3501065 RR-TB lineage4.8 None
SRR26159065 Other lineage4.9 None
ERR4815471 Other lineage4.9 None
ERR4814639 HR-TB lineage4 None
ERR4814690 Sensitive lineage2.2.1 None
ERR4815310 Other None
SRR3675230 RR-TB lineage3 None
ERR1750943 Sensitive lineage4 None
ERR1750908 Sensitive lineage4 None
ERR1750938 Other lineage4.4.1 None
ERR4815550 Other lineage4 None
ERR4815502 Other lineage4.1 None
SRR3675245 Other lineage4.1.2.1 None
SRR3675265 Other lineage4 None
ERR4814976 Other lineage4.9 None
SAMEA3501073 RR-TB lineage4.8 None
ERR4815022 Other lineage3.1.2.1 None
ERR2027250 Other lineage3.1.2 None
SRR3675509 Other lineage4.9 None
ERR4816001 Other lineage3 None
SRR5818419 Sensitive None
ERR4816964 Other lineage4.9 None
SAMEA3501015 Other lineage4.8 None
ERR4816184 Other lineage4.1.2.1 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR216965 HR-TB lineage4.9 None
SRR3675552 RR-TB lineage4.9 None
ERR4816322 Other lineage4.9 None
ERR2229198 MDR-TB lineage4.8 None
ERR4817070 Other lineage1.1.2 None
ERR4816417 Other lineage4.9 None
ERR4816470 Other lineage3 None
ERR4816702 RR-TB lineage4.6.2.2 None
ERR4816571 Other lineage1.1.2 None
ERR4817497 Other lineage1.1.2 None
ERR4816762 Other lineage4;lineage2 None
ERR4816745 Pre-XDR-TB lineage2.2.1 None
SRR5818426 Other None
ERR4816852 Other lineage4.9 None
SRR5818386 Other None
ERR4817434 Other lineage3 None
ERR4816831 Other lineage4.1.2.1 None
ERR4815815 Sensitive lineage4 None
ERR4816868 Other lineage4.4.1.1 None
ERR4817667 HR-TB lineage4.8 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR3275190 Other lineage3 nl
ERR4818710 Sensitive lineage4.9 None
SAMEA3450033 Other lineage4.8 None
ERR4818831 Other lineage3 None
SAMEA3501063 RR-TB lineage4.8 None
SRR5818663 Sensitive lineage4.1.2.1 dj
ERR4818259 RR-TB lineage4.1.1 None
ERR4818272 Other lineage4.3.2 None
ERR4818261 Other lineage1.1.2 None
ERR2513273 Other lineage4.1.2.1 None
ERR2513259 Other lineage3 None
ERR4818522 Pre-XDR-TB lineage3 None
ERR4818507 RR-TB lineage4.1.2.1 None
SRR5007167 RR-TB lineage4.1.1.3.1 None
ERR4818536 Other lineage4.9 None
ERR4818561 HR-TB lineage4 None
ERR3275709 HR-TB lineage3 nl
ERR4817645 Other lineage4.8 None
ERR4817584 MDR-TB lineage3 None
ERR4817555 RR-TB lineage3 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR4817554 Other lineage1.1.1 None
ERR2514181 Other lineage1.2.1.2.1 None
SRR5818458 Other None
ERR4820723 RR-TB lineage4.4.1.1 None
ERR4819314 Other lineage1.1.1 None
ERR4819357 Other lineage4.9 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4821769 Other lineage4.1.2.1 None
ERR4819462 Other lineage4 None
ERR4820746 RR-TB lineage3 None
ERR4819546 HR-TB lineage3 None
ERR4819706 MDR-TB lineage4.3.4.2 None
ERR4819723 Other None
SRR2024953 MDR-TB lineage2.2.1 cn
ERR4820833 HR-TB None
ERR4820130 Other lineage3 None
ERR4819528 RR-TB lineage3 None
SRR5341267 Pre-XDR-TB lineage3 None
ERR4819933 Other lineage4.9 None
SAMEA3501070 RR-TB lineage4.8 None
ERR4820019 Other lineage4.3.4.2.1 None
ERR4820193 Other lineage3 None
SRR5818445 Other None
ERR2446509 Other lineage3 nl
SAMEA3501052 RR-TB lineage4.8 None
ERR4821811 RR-TB lineage4.9 None
SAMEA3501046 RR-TB lineage4.8 None
SRR6045496 Other lineage6.1.3 None
SRR6045480 Other lineage4.1.1 None
ERR4822138 Other lineage4.1.2.1 None
ERR4821288 Other lineage4.7 None
SRR6046117 RR-TB lineage4.9 None
ERR4821222 Other lineage4.3.2.1 None
SRR6045664 Other lineage4.2.1 None
ERR4821616 Other lineage1.1.3.1 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR6045642 Other lineage3.1.2.2 None
SRR5818395 Sensitive lineage4.9 None
SRR5818385 Other lineage4.9 None
SRR5818391 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR5818394 Other lineage4.9 None
SRR5818400 Other lineage4.9 None
SRR5818397 Other lineage4.9 None
SRR5818398 Other lineage4.9 None
SRR5818402 Other lineage4.9 None
SRR5818396 Other lineage4.9 None
SRR5818399 Sensitive lineage4.9 None
SRR5818388 Other lineage4.9 None
SRR5818389 Other lineage4.9 None
SRR5818411 MDR-TB lineage4.9 None
SRR5818414 Other lineage4.9 None
SRR5818408 Other lineage4.9 None
SRR5818404 Other lineage4.9 None
SRR5818410 Sensitive lineage4.9 None
SRR5818415 Sensitive lineage4.9 None
SRR5818406 Other lineage4.9 None
SRR5818428 Sensitive lineage4.9 None
SRR5818413 HR-TB lineage4.9 None
SRR5818430 Sensitive lineage4.9 None
SRR5818422 Other lineage4.9 None
SRR5818436 Sensitive lineage4.9 None
SRR5818425 Other lineage4.9 None
SRR5818432 MDR-TB lineage4.9 None
SRR5818435 Sensitive lineage4.9 None
SRR5818429 Sensitive lineage4.9 None
SRR5818437 MDR-TB lineage4.9 None
SRR5818424 Sensitive lineage4.9 None
SRR5818448 Other lineage4.9 None
SRR5818446 Other lineage4.9 None
SRR5818442 Other lineage4.9 None
SRR5818441 Other lineage4.9 None
SRR5818421 Sensitive lineage4.9 None
SRR5818452 Other lineage4.9 None
SRR5818456 Other lineage4.9 None
SRR5818470 Other lineage4.9 None
SRR5818455 Sensitive lineage4.9 None
SRR5818449 MDR-TB lineage4.9 None
SRR5818464 Other lineage4.9 None
SRR5818466 Other lineage4.9 None
SRR5818459 Other lineage4.9 None
SRR5818460 Other lineage4.9 None
SRR6046152 Other lineage4.9 None
SRR5818463 Sensitive lineage4.9 None
SRR5818586 RR-TB lineage4.2.2.2 None
SRR5818462 Other lineage4.9 None
SRR5818469 Other lineage4.9 None
SRR6045832 HR-TB lineage4.9 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6044904 Other lineage3 None
SRR6045928 Other lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR6044936 Other lineage4 None
SRR6045124 Other lineage4.9 None
SRR6045267 RR-TB lineage4 None
SRR6045191 Sensitive lineage4.9 None
SRR6046020 Other lineage3 None
SRR6045359 Sensitive lineage4.9 None
SRR6045289 Other None
SRR6046250 Other lineage4.9 None
SRR6046246 Other lineage3 None
SRR6046442 Other lineage3 None
SRR6046275 Other lineage3.1.1 None
SRR6046359 Other lineage4.7 None
SRR6046376 Other lineage3 None
ERR2851356 Sensitive lineage4.9 None
ERR4829039 RR-TB lineage4.3.1 None
ERR4829360 Sensitive lineage4.7 None
SRR6046385 Other lineage4.9 None
ERR2851359 Other lineage4.9 None
SRR6046534 Other lineage1.1.2 None
SRR6046463 Other lineage4.4.1.1 None
SRR6046729 Other None
SRR6046607 Other lineage3 None
SRR6046616 Other lineage4.3.1.1 None
ERR502470 RR-TB lineage4.9 None
SRR6046737 Other lineage4.9 None
ERR4816569 Sensitive lineage4.3.3 gb
ERR2886463 Sensitive lineage2.2.1 None
SRR6046852 MDR-TB lineage3 None
SRR6046860 Other lineage4.4.1.1 None
ERR323037 HR-TB lineage4 None
ERR4814905 Sensitive lineage4.8 gb
SRR6982239 HR-TB lineage4.1.1.3 None
ERR485006 HR-TB lineage4.9 None
ERR2503533 Other lineage4.1.2.1 fi
SRR6982141 RR-TB lineage4.3.3 None
SRR6832644 Other lineage4.3.3 None
SRR6982246 Sensitive lineage4 None
SRR9971080 RR-TB lineage2.2.1 None
SRR7131287 Other lineage2.2.1.1 None
SRR7496471 Sensitive None
SRR7496523 Other lineage4.7 None
ERR2984792 Pre-XDR-TB lineage4.3.4.1 None
SRR9971270 RR-TB lineage2.2.1 None
SRR8651616 MDR-TB lineage2.2.1 None
SRR8651633 Pre-XDR-TB lineage4.4.2 None
SRR9971150 RR-TB lineage4.8.1 None
ERR4819175 Other lineage4.1.1.3 gb
DRR188753 Sensitive lineage1.2.1.2.1 None
DRR188816 Sensitive lineage4.2.2 None
DRR034348 Other lineage2.2.1 None
ERR037234 Sensitive lineage4.9 None
ERR067712 HR-TB lineage4 None
ERR10796571 Other lineage4.9 None
ERR1023502 MDR-TB lineage2.2.1 None
ERR1063855 Other lineage4 None
ERR4821519 Other lineage3 gb
ERR10796589 Other lineage4.9 None
ERR10796598 RR-TB lineage4.9 None
ERR10796632 Other lineage4.3.3 None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR4821962 Other lineage4.1.1.3 gb
ERR1199132 Sensitive lineage4.6.1.1 None
ERR3283046 MDR-TB lineage4.9 None
ERR3797065 MDR-TB lineage4 None
ERR3439441 Other La1.8.1 None
ERR3468488 RR-TB La1.8.1 None
ERR473303 Sensitive lineage4.9 None
ERR3806588 Other lineage6 None
ERR4178161 Other lineage4.4.1.1 None
ERR4596910 Sensitive lineage4 None
ERR4596902 HR-TB lineage3 None
ERR473323 HR-TB lineage4.9 None
ERR473334 HR-TB lineage4.9 None
ERR4769406 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4769408 Other La1.3 None
ERR4769419 Other lineage4.9 None
ERR4769442 HR-TB lineage4 None
ERR4769418 Other La1.2 None
ERR4769433 Pre-XDR-TB lineage4.9 None
ERR4769424 Sensitive lineage4.9 None
ERR4769436 Other La1.3 None
ERR4769514 Other La1.3 None
ERR4769444 HR-TB lineage4.9 None
ERR4769516 Other La1.3 None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4769495 Other La1.3 None
ERR4769547 Sensitive lineage4.9;La1.3 None
ERR4769554 RR-TB lineage4.9 None
ERR4769552 Other La1.3 None
ERR4769550 Other lineage4.9;La1.3 None
ERR4769555 Other La1.3 None
ERR4798823 HR-TB lineage4 None
ERR4796351 MDR-TB lineage4.9 None
ERR2514215 Other lineage2.2.1 gb
ERR4796577 MDR-TB None
ERR6197022 Other lineage4.9 None
ERR5917972 MDR-TB lineage4.4.1.1 za
ERR4811035 Pre-XDR-TB lineage4.5;lineage2.2.1 None
ERR5979789 Other lineage4.9 None
ERR6358951 HR-TB lineage4 None
ERR6359066 HR-TB lineage4 None
ERR6359069 Other lineage4.9 None
ERR6359070 Other lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6359074 HR-TB lineage4.9 None
ERR6865446 Other lineage4.4.1.1 None
ERR736831 HR-TB lineage4.9 None
ERR7801176 RR-TB lineage4.6.5 None
ERR736837 Other lineage4.9 None
ERR7801175 RR-TB lineage4.6.5 None
ERR9117704 Other lineage4.6 None
ERR9117760 HR-TB lineage4.3 None
ERR9117740 Other lineage3.1.1 None
ERR9117747 HR-TB lineage4.8 None
ERR9787336 Other lineage6 None
ERR9117759 Other lineage3 None
ERR9786076 Sensitive lineage3 None
ERR9786528 Sensitive lineage4.6.2.2 None
ERR9787033 Sensitive lineage6 None
ERR9117788 Other lineage3 None
ERR9117827 Other lineage1.2.2.2 None
ERR9896153 RR-TB lineage4.4.1.1 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR10315551 Sensitive lineage2.2.1 None
SRR10315556 Sensitive lineage2.2.1 None
ERR9992784 Pre-XDR-TB lineage2.2.2 None
SRR1140574 MDR-TB lineage4.8;lineage4.3.3 None
SRR10315751 MDR-TB lineage4.8 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
SRR11462861 Other La1.8.1 None
SRR1172717 Other lineage4.9 None
SRR1172807 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None