TB-Profiler result

Run: ERR4815022
Summary

Run ID: ERR4815022

Sample name:

Date: 01-04-2023 13:37:34

Number of reads: 316333

Percentage reads mapped: 22.79

Strain: lineage3.1.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
lineage3.1 East-African-Indian Non-CAS1-Delhi RD750 1.0
lineage3.1.2.1 East-African-Indian CAS2 RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.93 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6760 c.-542G>C upstream_gene_variant 0.23
gyrA 6763 c.-539G>T upstream_gene_variant 0.23
gyrA 6764 c.-538C>T upstream_gene_variant 0.23
gyrA 6775 c.-527G>T upstream_gene_variant 0.19
gyrB 6784 p.Asp515Glu missense_variant 0.18
gyrA 6787 c.-515G>A upstream_gene_variant 0.18
gyrA 6793 c.-509T>C upstream_gene_variant 0.18
gyrB 6797 p.Gly520Ser missense_variant 0.19
gyrB 6812 p.His525Asn missense_variant 0.29
gyrA 6838 c.-464C>T upstream_gene_variant 0.45
gyrA 6841 c.-461T>C upstream_gene_variant 0.45
gyrA 6853 c.-449A>G upstream_gene_variant 0.22
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 762200 c.2394C>T synonymous_variant 0.33
rpoB 762218 c.2412T>C synonymous_variant 0.27
rpoB 762233 c.2427G>C synonymous_variant 0.27
rpoB 762245 c.2439G>C synonymous_variant 0.3
rpoB 762246 c.2440C>T synonymous_variant 0.33
rpoB 762254 c.2448T>C synonymous_variant 0.3
rpoB 762275 c.2469C>A synonymous_variant 0.3
rpoB 762278 c.2472C>T synonymous_variant 0.3
rpoB 762284 c.2478G>T synonymous_variant 0.38
rpoB 762290 c.2484C>T synonymous_variant 0.38
rpoB 762293 c.2487T>C synonymous_variant 0.33
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762905 p.Asp1033Glu missense_variant 0.67
rpoC 762911 c.-459C>T upstream_gene_variant 0.75
rpoC 762917 c.-453C>T upstream_gene_variant 0.75
rpoC 762920 c.-450C>T upstream_gene_variant 0.75
rpoC 762929 c.-441G>C upstream_gene_variant 0.67
rpoC 762932 c.-438G>T upstream_gene_variant 0.6
rpoC 762938 c.-432G>C upstream_gene_variant 0.58
rpoC 762944 c.-426C>T upstream_gene_variant 0.78
rpoC 762962 c.-408C>T upstream_gene_variant 0.84
rpoC 762989 c.-381G>C upstream_gene_variant 0.86
rpoC 762995 c.-375G>C upstream_gene_variant 0.89
rpoB 763005 p.Cys1067Val missense_variant 0.76
rpoC 763013 c.-357C>A upstream_gene_variant 0.73
rpoC 763022 c.-348C>T upstream_gene_variant 0.74
rpoC 763025 c.-345C>T upstream_gene_variant 0.74
rpoC 763028 c.-342T>C upstream_gene_variant 0.77
rpoC 763031 c.-339T>C upstream_gene_variant 0.25
rpoC 763053 c.-317T>C upstream_gene_variant 0.67
rpoC 763067 c.-303C>T upstream_gene_variant 0.47
rpoC 763070 c.-300T>C upstream_gene_variant 0.45
rpoB 763074 p.Thr1090Val missense_variant 0.42
rpoC 763085 c.-285C>T upstream_gene_variant 0.42
rpoC 763088 c.-282C>G upstream_gene_variant 0.42
rpoC 763094 c.-276G>C upstream_gene_variant 0.39
rpoC 763103 c.-267G>A upstream_gene_variant 0.33
rpoC 763109 c.-261C>G upstream_gene_variant 0.38
rpoC 763115 c.-255T>C upstream_gene_variant 0.2
rpoB 763118 p.Glu1104Asp missense_variant 0.2
rpoC 763558 c.189C>T synonymous_variant 0.5
rpoC 763570 c.201G>C synonymous_variant 0.7
rpoC 763573 c.204G>T synonymous_variant 0.7
rpoC 763578 p.Phe70Tyr missense_variant 0.7
rpoC 763594 c.225C>T synonymous_variant 0.58
rpoC 763615 c.246G>C synonymous_variant 0.67
rpoC 763619 p.Arg84Lys missense_variant 0.67
rpoC 763622 p.Ala85Ser missense_variant 0.67
rpoC 763630 c.261G>T synonymous_variant 0.73
rpoC 763633 c.264T>C synonymous_variant 0.73
rpoC 763642 c.273G>C synonymous_variant 0.73
rpoC 763660 c.291T>G synonymous_variant 0.67
rpoC 763663 c.294C>T synonymous_variant 0.5
rpoC 763666 c.297G>T synonymous_variant 0.5
rpoC 763669 c.300C>G synonymous_variant 0.5
rpoC 763672 c.303C>A synonymous_variant 0.5
rpoC 763675 c.306C>A synonymous_variant 0.43
rpoC 764380 c.1011G>C synonymous_variant 0.2
rpoC 764387 c.1018T>C synonymous_variant 0.2
rpoC 764470 c.1101C>T synonymous_variant 0.2
rpoC 764485 c.1116G>C synonymous_variant 0.3
rpoC 764500 c.1131C>T synonymous_variant 0.23
rpoC 764503 c.1134G>T synonymous_variant 0.29
rpoC 764512 c.1143G>C synonymous_variant 0.35
rpoC 764521 c.1152T>C synonymous_variant 0.44
rpoC 764527 c.1158C>T synonymous_variant 0.47
rpoC 764536 c.1167G>C synonymous_variant 0.53
rpoC 764539 c.1170C>G synonymous_variant 0.53
rpoC 764548 c.1179G>A synonymous_variant 0.47
rpoC 764551 c.1182G>T synonymous_variant 0.5
rpoC 764566 c.1197C>G synonymous_variant 0.47
rpoC 764572 c.1203G>T synonymous_variant 0.47
rpoC 764575 c.1206T>G synonymous_variant 0.47
rpoC 764578 c.1209C>T synonymous_variant 0.5
rpoC 764581 c.1212T>C synonymous_variant 0.53
rpoC 764582 c.1213C>T synonymous_variant 0.47
rpoC 764605 c.1236G>T synonymous_variant 0.68
rpoC 764611 c.1242G>T synonymous_variant 0.67
rpoC 764623 c.1254C>G synonymous_variant 0.68
rpoC 764626 c.1257C>T synonymous_variant 0.67
rpoC 764635 c.1266C>T synonymous_variant 0.55
rpoC 764644 c.1275G>C synonymous_variant 0.58
rpoC 764650 c.1281G>T synonymous_variant 0.5
rpoC 764653 c.1284G>C synonymous_variant 0.47
rpoC 764656 c.1287C>T synonymous_variant 0.47
rpoC 764659 c.1290C>T synonymous_variant 0.45
rpoC 764660 p.Val431Ile missense_variant 0.45
rpoC 764686 c.1317C>T synonymous_variant 0.31
rpoC 764687 p.Gln440Glu missense_variant 0.31
rpoC 764692 c.1323C>T synonymous_variant 0.29
rpoC 764701 c.1332C>G synonymous_variant 0.25
rpoC 764858 p.Leu497Met missense_variant 0.2
rpoC 764863 c.1494G>C synonymous_variant 0.33
rpoC 764869 c.1500C>T synonymous_variant 0.4
rpoC 764875 c.1506C>T synonymous_variant 0.36
rpoC 764878 c.1509C>G synonymous_variant 0.33
rpoC 764887 c.1518G>T synonymous_variant 0.58
rpoC 764888 c.1519T>C synonymous_variant 0.58
rpoC 764911 c.1542A>G synonymous_variant 0.62
rpoC 764913 p.Met515Lys missense_variant 0.62
rpoC 764920 c.1551G>C synonymous_variant 0.62
rpoC 764923 c.1554A>G synonymous_variant 0.67
rpoC 764926 c.1557C>T synonymous_variant 0.67
rpoC 764932 c.1563C>A synonymous_variant 0.67
rpoC 764948 c.1579T>C synonymous_variant 0.57
rpoC 764952 p.Val528Ala missense_variant 0.57
rpoC 764968 c.1599T>C synonymous_variant 0.43
rpoC 764971 c.1602C>T synonymous_variant 0.46
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781760 c.201T>C synonymous_variant 0.36
rpsL 781763 c.204C>A synonymous_variant 0.45
rpsL 781793 c.234G>C synonymous_variant 0.58
rpsL 781802 c.243G>C synonymous_variant 0.64
rpsL 781805 c.246G>C synonymous_variant 0.64
rpsL 781814 c.255C>T synonymous_variant 0.64
rpsL 781817 c.258G>T synonymous_variant 0.64
rpsL 781820 c.261G>T synonymous_variant 0.64
rpsL 781829 c.270G>C synonymous_variant 0.58
rpsL 781832 c.273T>G synonymous_variant 0.58
rpsL 781838 c.279G>T synonymous_variant 0.54
rpsL 781841 c.282C>T synonymous_variant 0.54
rpsL 781850 c.291C>T synonymous_variant 0.62
rplC 800669 c.-140G>T upstream_gene_variant 0.45
rplC 800672 c.-137G>C upstream_gene_variant 0.45
rplC 800693 c.-116A>T upstream_gene_variant 0.53
rplC 800702 c.-107G>C upstream_gene_variant 0.5
rplC 800703 c.-106_-104delTTGinsCTC upstream_gene_variant 0.5
rplC 800714 c.-95C>T upstream_gene_variant 0.57
rplC 800715 c.-94A>C upstream_gene_variant 0.57
rplC 800720 c.-89T>C upstream_gene_variant 0.57
rplC 800723 c.-86C>G upstream_gene_variant 0.57
rplC 800726 c.-83G>C upstream_gene_variant 0.57
rplC 800744 c.-65G>T upstream_gene_variant 0.67
rplC 800745 c.-64_-62delCTCinsTTG upstream_gene_variant 0.67
rplC 801154 p.Gly116Ser missense_variant 0.18
fbiC 1302930 c.-1C>A upstream_gene_variant 0.22
fbiC 1304565 c.1638delT frameshift_variant 0.33
fbiC 1305434 p.Ala835Glu missense_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.93
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.94
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.95
rrs 1471978 n.133C>T non_coding_transcript_exon_variant 0.88
rrs 1471996 n.151C>T non_coding_transcript_exon_variant 0.82
rrs 1472070 n.225G>A non_coding_transcript_exon_variant 0.5
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.84
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.93
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.93
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.93
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 0.96
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.96
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.97
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 1.0
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 1.0
rrs 1472330 n.485G>T non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.98
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 0.96
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.93
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 0.93
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 1.0
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472484 n.639A>T non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 0.98
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 0.98
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.99
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.99
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.97
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.96
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.96
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.96
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.96
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 1.0
rrs 1472670 n.825G>A non_coding_transcript_exon_variant 0.92
rrs 1472690 n.845C>T non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.94
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.96
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.75
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.99
rrs 1472974 n.1129A>T non_coding_transcript_exon_variant 0.97
rrs 1472977 n.1133dupT non_coding_transcript_exon_variant 0.96
rrs 1472977 n.1132G>T non_coding_transcript_exon_variant 0.89
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.98
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.97
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.91
rrs 1473120 n.1275C>G non_coding_transcript_exon_variant 0.25
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.25
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 0.25
rrs 1473132 n.1287T>C non_coding_transcript_exon_variant 0.82
rrs 1473135 n.1290C>T non_coding_transcript_exon_variant 0.89
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.97
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.99
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.94
rrs 1473285 n.1442_1443delCC non_coding_transcript_exon_variant 0.92
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 0.92
rrs 1473293 n.1448G>T non_coding_transcript_exon_variant 0.92
rrl 1473670 n.13A>T non_coding_transcript_exon_variant 0.2
rrl 1473697 n.40C>G non_coding_transcript_exon_variant 0.79
rrl 1473698 n.41G>C non_coding_transcript_exon_variant 0.79
rrl 1473699 n.42A>T non_coding_transcript_exon_variant 0.79
rrl 1473718 n.61G>A non_coding_transcript_exon_variant 0.86
rrl 1473719 n.62G>A non_coding_transcript_exon_variant 0.86
rrl 1473728 n.71A>T non_coding_transcript_exon_variant 0.86
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 0.86
rrl 1473743 n.86C>T non_coding_transcript_exon_variant 0.89
rrl 1473750 n.93C>T non_coding_transcript_exon_variant 0.89
rrl 1473751 n.94C>T non_coding_transcript_exon_variant 0.89
rrl 1473752 n.95G>A non_coding_transcript_exon_variant 0.89
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.89
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 0.78
rrl 1473836 n.179A>G non_coding_transcript_exon_variant 0.67
rrl 1473839 n.182G>C non_coding_transcript_exon_variant 0.8
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 1.0
rrl 1473884 n.227C>T non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 1.0
rrl 1473889 n.232G>A non_coding_transcript_exon_variant 1.0
rrl 1473896 n.239C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473911 n.254G>A non_coding_transcript_exon_variant 1.0
rrl 1473918 n.261C>T non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474112 n.455T>G non_coding_transcript_exon_variant 0.57
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.93
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.94
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.96
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.52
rrl 1474182 n.525C>A non_coding_transcript_exon_variant 0.96
rrl 1474183 n.526T>G non_coding_transcript_exon_variant 0.96
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.93
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.93
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 0.97
rrl 1474200 n.545delT non_coding_transcript_exon_variant 0.97
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.97
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.97
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.96
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 0.95
rrl 1474286 n.629C>A non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 1.0
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 0.67
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 0.71
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 0.82
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.82
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.82
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.82
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.82
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.9
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.9
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 0.9
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.91
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.94
rrl 1474527 n.870T>G non_coding_transcript_exon_variant 0.97
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.97
rrl 1474542 n.885A>C non_coding_transcript_exon_variant 0.97
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.5
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.89
rrl 1474736 n.1079C>T non_coding_transcript_exon_variant 0.89
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.89
rrl 1474751 n.1094G>A non_coding_transcript_exon_variant 0.89
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.89
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.95
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.99
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.98
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.98
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.98
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.99
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 0.99
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.99
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.99
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.98
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.97
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 0.98
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.98
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.97
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.96
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 0.96
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475175 n.1518G>C non_coding_transcript_exon_variant 1.0
rrl 1475176 n.1519G>A non_coding_transcript_exon_variant 1.0
rrl 1475451 n.1794T>C non_coding_transcript_exon_variant 0.67
rrl 1475452 n.1795C>G non_coding_transcript_exon_variant 0.67
rrl 1475458 n.1801C>T non_coding_transcript_exon_variant 0.67
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.67
rrl 1475481 n.1824C>T non_coding_transcript_exon_variant 0.83
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.83
rrl 1475486 n.1829A>T non_coding_transcript_exon_variant 0.88
rrl 1475514 n.1857G>A non_coding_transcript_exon_variant 1.0
rrl 1475522 n.1865A>T non_coding_transcript_exon_variant 1.0
rrl 1475525 n.1868G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 1.0
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 1.0
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.6
rrl 1475672 n.2015C>T non_coding_transcript_exon_variant 0.77
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 0.77
rrl 1475688 n.2031G>A non_coding_transcript_exon_variant 0.83
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 0.83
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 0.83
rrl 1475704 n.2047C>T non_coding_transcript_exon_variant 0.92
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.98
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.99
rrl 1475758 n.2101A>G non_coding_transcript_exon_variant 0.99
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 1.0
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.99
rrl 1475879 n.2222T>C non_coding_transcript_exon_variant 0.97
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.96
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 0.96
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.96
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.98
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.97
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 0.98
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.97
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.98
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.98
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.99
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.98
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.98
rrl 1476032 n.2375C>T non_coding_transcript_exon_variant 0.98
rrl 1476033 n.2376T>A non_coding_transcript_exon_variant 0.98
rrl 1476034 n.2377C>T non_coding_transcript_exon_variant 0.98
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.98
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.98
rrl 1476046 n.2389G>T non_coding_transcript_exon_variant 0.98
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.98
rrl 1476080 n.2423T>G non_coding_transcript_exon_variant 0.92
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 0.8
rrl 1476116 n.2459A>G non_coding_transcript_exon_variant 0.86
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.93
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.96
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.95
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.95
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.95
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.95
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.94
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.95
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.97
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.97
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 0.97
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.97
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.97
rrl 1476262 n.2605G>A non_coding_transcript_exon_variant 0.97
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.98
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.97
rrl 1476298 n.2641C>A non_coding_transcript_exon_variant 0.97
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 0.97
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 0.97
rrl 1476307 n.2650A>T non_coding_transcript_exon_variant 0.97
rrl 1476309 n.2652G>T non_coding_transcript_exon_variant 0.97
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.99
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.99
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.96
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.96
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.96
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.96
rrl 1476580 n.2923G>A non_coding_transcript_exon_variant 0.95
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.95
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.95
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.95
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
inhA 1674578 p.Ser126Leu missense_variant 0.25
rpsA 1833649 c.108C>T synonymous_variant 0.36
rpsA 1833661 c.120A>G synonymous_variant 0.33
rpsA 1833664 c.123C>T synonymous_variant 0.33
rpsA 1833668 p.Ile43Val missense_variant 0.36
rpsA 1833676 c.135A>G synonymous_variant 0.36
rpsA 1833679 c.138G>T synonymous_variant 0.38
rpsA 1833684 p.Arg48His missense_variant 0.38
rpsA 1833694 c.153G>C synonymous_variant 0.38
rpsA 1833697 c.156C>G synonymous_variant 0.33
rpsA 1833709 c.168C>A synonymous_variant 0.38
rpsA 1833727 c.186G>C synonymous_variant 0.23
rpsA 1834186 c.645C>T synonymous_variant 0.33
rpsA 1834189 c.648G>T synonymous_variant 0.33
rpsA 1834195 c.654G>C synonymous_variant 0.33
rpsA 1834213 c.672G>A synonymous_variant 0.5
rpsA 1834234 c.693G>C synonymous_variant 0.67
rpsA 1834240 c.699T>C synonymous_variant 0.67
rpsA 1834246 c.705G>T synonymous_variant 0.33
rpsA 1834249 c.708T>C synonymous_variant 0.33
rpsA 1834252 c.711C>T synonymous_variant 0.29
rpsA 1834261 c.720A>G synonymous_variant 0.29
rpsA 1834264 c.723G>C synonymous_variant 0.25
rpsA 1834279 c.738C>T synonymous_variant 0.22
rpsA 1834654 c.1113G>A synonymous_variant 0.43
rpsA 1834663 c.1122C>T synonymous_variant 0.5
rpsA 1834667 p.Ala376Ser missense_variant 0.5
rpsA 1834684 c.1143C>T synonymous_variant 0.36
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.4
rpsA 1834712 p.Ile391Val missense_variant 0.36
rpsA 1834720 c.1179C>A synonymous_variant 0.36
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154097 p.Pro672Leu missense_variant 0.4
katG 2154724 p.Arg463Leu missense_variant 0.75
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2168604 p.Pro670Leu missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2518397 p.Trp95Arg missense_variant 0.22
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
ribD 2986646 c.-193G>A upstream_gene_variant 1.0
Rv2752c 3067116 c.-925C>A upstream_gene_variant 0.17
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3448555 p.Gly18Arg missense_variant 0.2
Rv3083 3449529 c.1026C>A synonymous_variant 0.29
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4038713 c.1992T>C synonymous_variant 0.29
clpC1 4038722 c.1983G>T synonymous_variant 0.29
clpC1 4038729 p.Asn659Thr missense_variant 0.13
clpC1 4038743 p.Thr654Ile missense_variant 0.55
clpC1 4038749 c.1956C>T synonymous_variant 0.59
clpC1 4038755 c.1950G>T synonymous_variant 0.59
clpC1 4038764 c.1941C>G synonymous_variant 0.59
clpC1 4038767 c.1938G>C synonymous_variant 0.62
clpC1 4038782 c.1923G>C synonymous_variant 0.65
clpC1 4038793 c.1912C>T synonymous_variant 0.68
clpC1 4038795 p.Ser637Thr missense_variant 0.71
clpC1 4038803 c.1902C>T synonymous_variant 0.71
clpC1 4038811 p.Gln632Lys missense_variant 0.71
clpC1 4038812 c.1893T>C synonymous_variant 0.7
clpC1 4038815 c.1890G>C synonymous_variant 0.72
clpC1 4038836 c.1869G>C synonymous_variant 0.69
clpC1 4038839 c.1866G>T synonymous_variant 0.68
clpC1 4038845 c.1860G>C synonymous_variant 0.68
clpC1 4038851 c.1854G>A synonymous_variant 0.68
clpC1 4038860 c.1845G>C synonymous_variant 0.65
clpC1 4038863 c.1842G>T synonymous_variant 0.65
clpC1 4038878 c.1827A>G synonymous_variant 0.75
clpC1 4038884 c.1821C>T synonymous_variant 0.74
clpC1 4038890 c.1815G>A synonymous_variant 0.75
clpC1 4038908 c.1797C>G synonymous_variant 0.4
clpC1 4038911 c.1794G>T synonymous_variant 0.4
clpC1 4038914 c.1791G>T synonymous_variant 0.25
clpC1 4038917 c.1788C>T synonymous_variant 0.25
clpC1 4038923 c.1782A>C synonymous_variant 0.29
clpC1 4038926 c.1779G>C synonymous_variant 0.29
clpC1 4038929 c.1776G>C synonymous_variant 0.25
clpC1 4038941 c.1764G>T synonymous_variant 0.25
clpC1 4038947 c.1758C>T synonymous_variant 0.25
clpC1 4038953 c.1752A>G synonymous_variant 0.29
clpC1 4039187 c.1518G>A synonymous_variant 0.22
clpC1 4039838 p.Leu289Ile missense_variant 0.25
clpC1 4039844 c.861C>T synonymous_variant 0.25
clpC1 4039850 c.855T>C synonymous_variant 0.2
clpC1 4039871 p.Thr278Gln missense_variant 0.15
clpC1 4039877 c.828C>T synonymous_variant 0.15
clpC1 4039886 c.819C>G synonymous_variant 0.18
clpC1 4039889 c.816G>C synonymous_variant 0.17
clpC1 4039898 c.807C>G synonymous_variant 0.17
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244785 p.Arg518Leu missense_variant 0.25
ubiA 4269610 p.Val75Glu missense_variant 0.22
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4408025 p.Glu60Lys missense_variant 0.29
gid 4408048 p.Cys52Phe missense_variant 1.0