Run ID: ERR4815022
Sample name:
Date: 01-04-2023 13:37:34
Number of reads: 316333
Percentage reads mapped: 22.79
Strain: lineage3.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 | 1.0 |
lineage3.1.2.1 | East-African-Indian | CAS2 | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472644 | n.799C>T | non_coding_transcript_exon_variant | 0.93 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6760 | c.-542G>C | upstream_gene_variant | 0.23 |
gyrA | 6763 | c.-539G>T | upstream_gene_variant | 0.23 |
gyrA | 6764 | c.-538C>T | upstream_gene_variant | 0.23 |
gyrA | 6775 | c.-527G>T | upstream_gene_variant | 0.19 |
gyrB | 6784 | p.Asp515Glu | missense_variant | 0.18 |
gyrA | 6787 | c.-515G>A | upstream_gene_variant | 0.18 |
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.18 |
gyrB | 6797 | p.Gly520Ser | missense_variant | 0.19 |
gyrB | 6812 | p.His525Asn | missense_variant | 0.29 |
gyrA | 6838 | c.-464C>T | upstream_gene_variant | 0.45 |
gyrA | 6841 | c.-461T>C | upstream_gene_variant | 0.45 |
gyrA | 6853 | c.-449A>G | upstream_gene_variant | 0.22 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 762200 | c.2394C>T | synonymous_variant | 0.33 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.27 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.27 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.3 |
rpoB | 762246 | c.2440C>T | synonymous_variant | 0.33 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.3 |
rpoB | 762275 | c.2469C>A | synonymous_variant | 0.3 |
rpoB | 762278 | c.2472C>T | synonymous_variant | 0.3 |
rpoB | 762284 | c.2478G>T | synonymous_variant | 0.38 |
rpoB | 762290 | c.2484C>T | synonymous_variant | 0.38 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.33 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoB | 762905 | p.Asp1033Glu | missense_variant | 0.67 |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.75 |
rpoC | 762917 | c.-453C>T | upstream_gene_variant | 0.75 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.75 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.67 |
rpoC | 762932 | c.-438G>T | upstream_gene_variant | 0.6 |
rpoC | 762938 | c.-432G>C | upstream_gene_variant | 0.58 |
rpoC | 762944 | c.-426C>T | upstream_gene_variant | 0.78 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.84 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.86 |
rpoC | 762995 | c.-375G>C | upstream_gene_variant | 0.89 |
rpoB | 763005 | p.Cys1067Val | missense_variant | 0.76 |
rpoC | 763013 | c.-357C>A | upstream_gene_variant | 0.73 |
rpoC | 763022 | c.-348C>T | upstream_gene_variant | 0.74 |
rpoC | 763025 | c.-345C>T | upstream_gene_variant | 0.74 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.77 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.25 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.67 |
rpoC | 763067 | c.-303C>T | upstream_gene_variant | 0.47 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.45 |
rpoB | 763074 | p.Thr1090Val | missense_variant | 0.42 |
rpoC | 763085 | c.-285C>T | upstream_gene_variant | 0.42 |
rpoC | 763088 | c.-282C>G | upstream_gene_variant | 0.42 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.39 |
rpoC | 763103 | c.-267G>A | upstream_gene_variant | 0.33 |
rpoC | 763109 | c.-261C>G | upstream_gene_variant | 0.38 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.2 |
rpoB | 763118 | p.Glu1104Asp | missense_variant | 0.2 |
rpoC | 763558 | c.189C>T | synonymous_variant | 0.5 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.7 |
rpoC | 763573 | c.204G>T | synonymous_variant | 0.7 |
rpoC | 763578 | p.Phe70Tyr | missense_variant | 0.7 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.58 |
rpoC | 763615 | c.246G>C | synonymous_variant | 0.67 |
rpoC | 763619 | p.Arg84Lys | missense_variant | 0.67 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.67 |
rpoC | 763630 | c.261G>T | synonymous_variant | 0.73 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.73 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.73 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.67 |
rpoC | 763663 | c.294C>T | synonymous_variant | 0.5 |
rpoC | 763666 | c.297G>T | synonymous_variant | 0.5 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.5 |
rpoC | 763672 | c.303C>A | synonymous_variant | 0.5 |
rpoC | 763675 | c.306C>A | synonymous_variant | 0.43 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.2 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.2 |
rpoC | 764470 | c.1101C>T | synonymous_variant | 0.2 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.3 |
rpoC | 764500 | c.1131C>T | synonymous_variant | 0.23 |
rpoC | 764503 | c.1134G>T | synonymous_variant | 0.29 |
rpoC | 764512 | c.1143G>C | synonymous_variant | 0.35 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.44 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.47 |
rpoC | 764536 | c.1167G>C | synonymous_variant | 0.53 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.53 |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.47 |
rpoC | 764551 | c.1182G>T | synonymous_variant | 0.5 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.47 |
rpoC | 764572 | c.1203G>T | synonymous_variant | 0.47 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.47 |
rpoC | 764578 | c.1209C>T | synonymous_variant | 0.5 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.53 |
rpoC | 764582 | c.1213C>T | synonymous_variant | 0.47 |
rpoC | 764605 | c.1236G>T | synonymous_variant | 0.68 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.67 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.68 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.67 |
rpoC | 764635 | c.1266C>T | synonymous_variant | 0.55 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.58 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.5 |
rpoC | 764653 | c.1284G>C | synonymous_variant | 0.47 |
rpoC | 764656 | c.1287C>T | synonymous_variant | 0.47 |
rpoC | 764659 | c.1290C>T | synonymous_variant | 0.45 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.45 |
rpoC | 764686 | c.1317C>T | synonymous_variant | 0.31 |
rpoC | 764687 | p.Gln440Glu | missense_variant | 0.31 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.29 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.25 |
rpoC | 764858 | p.Leu497Met | missense_variant | 0.2 |
rpoC | 764863 | c.1494G>C | synonymous_variant | 0.33 |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.4 |
rpoC | 764875 | c.1506C>T | synonymous_variant | 0.36 |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.33 |
rpoC | 764887 | c.1518G>T | synonymous_variant | 0.58 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.58 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.62 |
rpoC | 764913 | p.Met515Lys | missense_variant | 0.62 |
rpoC | 764920 | c.1551G>C | synonymous_variant | 0.62 |
rpoC | 764923 | c.1554A>G | synonymous_variant | 0.67 |
rpoC | 764926 | c.1557C>T | synonymous_variant | 0.67 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.67 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.57 |
rpoC | 764952 | p.Val528Ala | missense_variant | 0.57 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.43 |
rpoC | 764971 | c.1602C>T | synonymous_variant | 0.46 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.36 |
rpsL | 781763 | c.204C>A | synonymous_variant | 0.45 |
rpsL | 781793 | c.234G>C | synonymous_variant | 0.58 |
rpsL | 781802 | c.243G>C | synonymous_variant | 0.64 |
rpsL | 781805 | c.246G>C | synonymous_variant | 0.64 |
rpsL | 781814 | c.255C>T | synonymous_variant | 0.64 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.64 |
rpsL | 781820 | c.261G>T | synonymous_variant | 0.64 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.58 |
rpsL | 781832 | c.273T>G | synonymous_variant | 0.58 |
rpsL | 781838 | c.279G>T | synonymous_variant | 0.54 |
rpsL | 781841 | c.282C>T | synonymous_variant | 0.54 |
rpsL | 781850 | c.291C>T | synonymous_variant | 0.62 |
rplC | 800669 | c.-140G>T | upstream_gene_variant | 0.45 |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.45 |
rplC | 800693 | c.-116A>T | upstream_gene_variant | 0.53 |
rplC | 800702 | c.-107G>C | upstream_gene_variant | 0.5 |
rplC | 800703 | c.-106_-104delTTGinsCTC | upstream_gene_variant | 0.5 |
rplC | 800714 | c.-95C>T | upstream_gene_variant | 0.57 |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.57 |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.57 |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.57 |
rplC | 800726 | c.-83G>C | upstream_gene_variant | 0.57 |
rplC | 800744 | c.-65G>T | upstream_gene_variant | 0.67 |
rplC | 800745 | c.-64_-62delCTCinsTTG | upstream_gene_variant | 0.67 |
rplC | 801154 | p.Gly116Ser | missense_variant | 0.18 |
fbiC | 1302930 | c.-1C>A | upstream_gene_variant | 0.22 |
fbiC | 1304565 | c.1638delT | frameshift_variant | 0.33 |
fbiC | 1305434 | p.Ala835Glu | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471923 | n.78T>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.95 |
rrs | 1471978 | n.133C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1471996 | n.151C>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472070 | n.225G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472078 | n.233C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472150 | n.305T>G | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472151 | n.306C>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472278 | n.433C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472330 | n.485G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472435 | n.590T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472438 | n.593T>C | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472439 | n.594C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472447 | n.602C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472448 | n.603T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472450 | n.605A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472451 | n.606C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472461 | n.616G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472462 | n.617T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472471 | n.626G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472484 | n.639A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472670 | n.825G>A | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472690 | n.845C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.99 |
rrs | 1472974 | n.1129A>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472977 | n.1133dupT | non_coding_transcript_exon_variant | 0.96 |
rrs | 1472977 | n.1132G>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473120 | n.1275C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473123 | n.1278A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473132 | n.1287T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473135 | n.1290C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.99 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473285 | n.1442_1443delCC | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473293 | n.1448G>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1473670 | n.13A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473697 | n.40C>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1473698 | n.41G>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1473699 | n.42A>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1473718 | n.61G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1473719 | n.62G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1473728 | n.71A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1473731 | n.74T>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1473743 | n.86C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473750 | n.93C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473751 | n.94C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473752 | n.95G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1473836 | n.179A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473839 | n.182G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473884 | n.227C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473889 | n.232G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473896 | n.239C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473899 | n.242A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473911 | n.254G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473918 | n.261C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473922 | n.265A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474112 | n.455T>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474130 | n.473C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474174 | n.517A>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1474182 | n.525C>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474183 | n.526T>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474185 | n.529delA | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474263 | n.606G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474286 | n.629C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474351 | n.694G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474353 | n.696A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474387 | n.730C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474451 | n.794T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474467 | n.810A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1474487 | n.830G>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474496 | n.839C>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474498 | n.841G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474505 | n.848C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474507 | n.850G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1474517 | n.860C>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1474527 | n.870T>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474542 | n.885A>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474722 | n.1065T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474736 | n.1079C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474751 | n.1094G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1474784 | n.1127C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474798 | n.1141C>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474824 | n.1167A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474825 | n.1168G>A | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1474837 | n.1180A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474901 | n.1244A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1474913 | n.1256T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1474921 | n.1264C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475171 | n.1514C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475175 | n.1518G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475176 | n.1519G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475451 | n.1794T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475452 | n.1795C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475458 | n.1801C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475481 | n.1824C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475486 | n.1829A>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475514 | n.1857G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475522 | n.1865A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475525 | n.1868G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475542 | n.1885A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475544 | n.1887A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475550 | n.1893A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1475672 | n.2015C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1475688 | n.2031G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475696 | n.2039T>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475703 | n.2046A>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1475704 | n.2047C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1475713 | n.2056C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475758 | n.2101A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475769 | n.2112T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475879 | n.2222T>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1475997 | n.2340A>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476032 | n.2375C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476033 | n.2376T>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476034 | n.2377C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476035 | n.2378G>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476046 | n.2389G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476080 | n.2423T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476113 | n.2456T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476116 | n.2459A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476262 | n.2605G>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476298 | n.2641C>A | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476307 | n.2650A>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476309 | n.2652G>T | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476535 | n.2878G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476580 | n.2923G>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476585 | n.2928A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476607 | n.2950C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476614 | n.2957A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476616 | n.2959A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476624 | n.2967T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476629 | n.2972C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476630 | n.2973A>G | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674578 | p.Ser126Leu | missense_variant | 0.25 |
rpsA | 1833649 | c.108C>T | synonymous_variant | 0.36 |
rpsA | 1833661 | c.120A>G | synonymous_variant | 0.33 |
rpsA | 1833664 | c.123C>T | synonymous_variant | 0.33 |
rpsA | 1833668 | p.Ile43Val | missense_variant | 0.36 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.36 |
rpsA | 1833679 | c.138G>T | synonymous_variant | 0.38 |
rpsA | 1833684 | p.Arg48His | missense_variant | 0.38 |
rpsA | 1833694 | c.153G>C | synonymous_variant | 0.38 |
rpsA | 1833697 | c.156C>G | synonymous_variant | 0.33 |
rpsA | 1833709 | c.168C>A | synonymous_variant | 0.38 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.23 |
rpsA | 1834186 | c.645C>T | synonymous_variant | 0.33 |
rpsA | 1834189 | c.648G>T | synonymous_variant | 0.33 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.33 |
rpsA | 1834213 | c.672G>A | synonymous_variant | 0.5 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 0.67 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.67 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.33 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.33 |
rpsA | 1834252 | c.711C>T | synonymous_variant | 0.29 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.29 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.25 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 0.22 |
rpsA | 1834654 | c.1113G>A | synonymous_variant | 0.43 |
rpsA | 1834663 | c.1122C>T | synonymous_variant | 0.5 |
rpsA | 1834667 | p.Ala376Ser | missense_variant | 0.5 |
rpsA | 1834684 | c.1143C>T | synonymous_variant | 0.36 |
rpsA | 1834688 | c.1147_1149delAGTinsTCC | synonymous_variant | 0.4 |
rpsA | 1834712 | p.Ile391Val | missense_variant | 0.36 |
rpsA | 1834720 | c.1179C>A | synonymous_variant | 0.36 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154097 | p.Pro672Leu | missense_variant | 0.4 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.75 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168604 | p.Pro670Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2518397 | p.Trp95Arg | missense_variant | 0.22 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ribD | 2986646 | c.-193G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3067116 | c.-925C>A | upstream_gene_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448555 | p.Gly18Arg | missense_variant | 0.2 |
Rv3083 | 3449529 | c.1026C>A | synonymous_variant | 0.29 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.29 |
clpC1 | 4038722 | c.1983G>T | synonymous_variant | 0.29 |
clpC1 | 4038729 | p.Asn659Thr | missense_variant | 0.13 |
clpC1 | 4038743 | p.Thr654Ile | missense_variant | 0.55 |
clpC1 | 4038749 | c.1956C>T | synonymous_variant | 0.59 |
clpC1 | 4038755 | c.1950G>T | synonymous_variant | 0.59 |
clpC1 | 4038764 | c.1941C>G | synonymous_variant | 0.59 |
clpC1 | 4038767 | c.1938G>C | synonymous_variant | 0.62 |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.65 |
clpC1 | 4038793 | c.1912C>T | synonymous_variant | 0.68 |
clpC1 | 4038795 | p.Ser637Thr | missense_variant | 0.71 |
clpC1 | 4038803 | c.1902C>T | synonymous_variant | 0.71 |
clpC1 | 4038811 | p.Gln632Lys | missense_variant | 0.71 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.7 |
clpC1 | 4038815 | c.1890G>C | synonymous_variant | 0.72 |
clpC1 | 4038836 | c.1869G>C | synonymous_variant | 0.69 |
clpC1 | 4038839 | c.1866G>T | synonymous_variant | 0.68 |
clpC1 | 4038845 | c.1860G>C | synonymous_variant | 0.68 |
clpC1 | 4038851 | c.1854G>A | synonymous_variant | 0.68 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.65 |
clpC1 | 4038863 | c.1842G>T | synonymous_variant | 0.65 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.75 |
clpC1 | 4038884 | c.1821C>T | synonymous_variant | 0.74 |
clpC1 | 4038890 | c.1815G>A | synonymous_variant | 0.75 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.4 |
clpC1 | 4038911 | c.1794G>T | synonymous_variant | 0.4 |
clpC1 | 4038914 | c.1791G>T | synonymous_variant | 0.25 |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.25 |
clpC1 | 4038923 | c.1782A>C | synonymous_variant | 0.29 |
clpC1 | 4038926 | c.1779G>C | synonymous_variant | 0.29 |
clpC1 | 4038929 | c.1776G>C | synonymous_variant | 0.25 |
clpC1 | 4038941 | c.1764G>T | synonymous_variant | 0.25 |
clpC1 | 4038947 | c.1758C>T | synonymous_variant | 0.25 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.29 |
clpC1 | 4039187 | c.1518G>A | synonymous_variant | 0.22 |
clpC1 | 4039838 | p.Leu289Ile | missense_variant | 0.25 |
clpC1 | 4039844 | c.861C>T | synonymous_variant | 0.25 |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.2 |
clpC1 | 4039871 | p.Thr278Gln | missense_variant | 0.15 |
clpC1 | 4039877 | c.828C>T | synonymous_variant | 0.15 |
clpC1 | 4039886 | c.819C>G | synonymous_variant | 0.18 |
clpC1 | 4039889 | c.816G>C | synonymous_variant | 0.17 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.17 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244785 | p.Arg518Leu | missense_variant | 0.25 |
ubiA | 4269610 | p.Val75Glu | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408025 | p.Glu60Lys | missense_variant | 0.29 |
gid | 4408048 | p.Cys52Phe | missense_variant | 1.0 |