EBG00000313339 - n.1094G>A
Drug resistance types
23 Sensitive
53 RR-TB
22 HR-TB
52 MDR-TB
29 Pre-XDR-TB
1 XDR-TB
141 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 21 |
| lineage4.3.2 | 3 |
| lineage4.9 | 54 |
| lineage3 | 16 |
| lineage4.1.2.1 | 25 |
| lineage4.1.1.3 | 8 |
| lineage3.1.2.1 | 3 |
| 9 | |
| lineage4 | 11 |
| lineage6.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.7 | 5 |
| lineage4.8.2 | 3 |
| lineage3.1.3 | 1 |
| lineage3.1.2.2 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage4.2.2.2;lineage3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.1 | 5 |
| lineage4.1.2 | 1 |
| lineage4.1.1 | 1 |
| lineage2.2.1 | 57 |
| lineage1.2.2.2 | 2 |
| La1.3 | 5 |
| lineage4.3.3 | 5 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2;lineage3.1 | 2 |
| lineage4.3.4.1 | 3 |
| lineage5.1.1 | 1 |
| La1.8.1 | 9 |
| lineage4.3 | 2 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.2.1 | 7 |
| La1.2 | 2 |
| lineage2.2.2 | 5 |
| lineage4.4.1.2 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.4.2 | 5 |
| lineage4.1.1.2 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1.6 | 1 |
| La2 | 1 |
| La1.4 | 1 |
| lineage4.4 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.2.2 | 1 |
| lineage4.5 | 1 |
| lineage1.2.1.2 | 2 |
| La1.7.1 | 3 |
| lineage1.1.1 | 1 |
| lineage6.1.1 | 1 |
| lineage2.2 | 2 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.1 | 1 |
| lineage3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.6.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 321 |
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4820484 | Other | lineage4.8 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | SRR5007172 | Sensitive | lineage4.1.2.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820798 | Other | lineage3.1.2.1 | gb | ERR4820193 | Other | lineage3 | None | ERR4820030 | Other | lineage4.9 | None | ERR1023509 | Other | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | ERR4821057 | HR-TB | lineage4 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821519 | Other | lineage3 | gb | ERR4821725 | Other | lineage4.8.2 | gb | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | SRR5818694 | RR-TB | lineage4.2.2.2;lineage3 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045986 | Other | lineage3 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045999 | Sensitive | lineage4.8.2 | gb | SRR6046020 | Other | lineage3 | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045178 | Other | lineage3 | None | SRR6045243 | Sensitive | lineage4.1.1 | gb | SRR6046250 | Other | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046359 | Other | lineage4.7 | None | ERR4829472 | Sensitive | lineage4.8 | it | ERR2851354 | RR-TB | lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046442 | Other | lineage3 | None | SRR6046482 | HR-TB | None | ERR502470 | RR-TB | lineage4.9 | None | ERR3077969 | Other | La1.3 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | SRR6896545 | Other | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4972588 | MDR-TB | lineage4.3.2 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982389 | Other | lineage4.1.2;lineage3.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5087846 | Other | La1.8.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5087596 | Other | La1.8.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131028 | Other | lineage4.8 | None | SRR7131031 | Other | lineage4.2.2.2 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131097 | Sensitive | lineage2.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7645927 | Other | lineage4.8 | None | SRR7585435 | Other | lineage4.9 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7851312 | Other | La1.2 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | DRR184903 | Sensitive | lineage2.2.2 | None | DRR185024 | Other | lineage2.2.2 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3283032 | HR-TB | None | ERR3439265 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4769514 | Other | La1.3 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769453 | Other | La1.3 | None | ERR4769517 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769546 | Other | La1.3 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR4800226 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800197 | HR-TB | None | ERR5979407 | Other | lineage3 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR6197044 | RR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR6197024 | RR-TB | lineage4.9 | None | ERR6197032 | Other | lineage4.9 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR6359073 | Sensitive | lineage4.9 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR8158065 | Sensitive | lineage2.2.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1175473 | Other | lineage4.9 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1173310 | MDR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR13888750 | Other | La2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16058205 | HR-TB | lineage2.2.1 | None | SRR16156751 | RR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR16156832 | RR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR1792025 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR19303810 | Sensitive | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303899 | Other | lineage3 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR2101625 | Other | lineage4.1.2;lineage3.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21595944 | Other | lineage2.2.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR21658552 | Other | lineage6.1.1 | None | SRR21659828 | Sensitive | lineage4.1.2.1 | None | SRR21662764 | Other | lineage2.2.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR21727888 | Other | lineage1.2.1.2 | None | SRR22048375 | Other | lineage4.1.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR22424851 | MDR-TB | lineage4.3.3 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675282 | Other | None | ERR4815502 | Other | lineage4.1 | None | SRR3675265 | Other | lineage4 | None | ERR4814905 | Other | lineage4.8 | gb | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4815075 | MDR-TB | lineage3 | None | SRR3675513 | Other | lineage4.8 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816231 | Other | lineage4 | None | ERR4817069 | RR-TB | None | SRR3675565 | Other | lineage3 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR4816571 | Other | lineage1.1.2 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229442 | HR-TB | lineage4.8 | None | ERR4816734 | Sensitive | lineage4.9 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2510736 | Other | lineage4.1.2.1 | None | ERR2510781 | Sensitive | lineage4.8 | it |
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