EBG00000313339 - n.2039T>A
Drug resistance types
3 Sensitive
20 RR-TB
6 HR-TB
15 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| 6 | |
| lineage4.9 | 28 |
| lineage3 | 12 |
| lineage4.1.2.1 | 6 |
| lineage4.1.4 | 1 |
| lineage4.4.1.1 | 3 |
| lineage3.1.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.6.1.1 | 3 |
| lineage4.3.3 | 3 |
| lineage2.2.1 | 10 |
| lineage2.2.2 | 1 |
| La1.7.X-unk4 | 1 |
| lineage4 | 5 |
| La1.8.1 | 1 |
| lineage4.9;La1.3 | 1 |
| La1.3 | 1 |
| lineage1.1.3.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| La1.4 | 1 |
| lineage4.4.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 2 |
| lineage4.8 | 2 |
| lineage4.1.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1.1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1023509 | Other | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4820030 | Other | lineage4.9 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821054 | Other | lineage3 | None | SRR6046376 | Other | lineage3 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4828962 | Other | lineage4.1.4 | it | ERR4830742 | MDR-TB | lineage4.4.1.1 | dz | SRR6046508 | Sensitive | lineage3.1.2.2 | gb | ERR502478 | RR-TB | lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SAMN02567682 | Other | lineage4.6.1.1 | ug | ERR3275190 | Other | lineage3 | nl | SRR6832644 | Other | lineage4.3.3 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | DRR184932 | Other | lineage2.2.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796630 | HR-TB | None | ERR10796634 | Other | lineage4 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR6197040 | Other | lineage4.9 | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR4811708 | HR-TB | lineage4 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9117826 | Other | lineage3.1.3 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | SRR11972447 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173834 | Other | lineage4.6.1.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR18003031 | HR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4815310 | Other | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4815550 | Other | lineage4 | None | ERR4816198 | Sensitive | lineage4.1.3 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR4814976 | Other | lineage4.9 | None | ERR4815022 | Other | lineage3.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4817434 | Other | lineage3 | None | ERR4816868 | Other | lineage4.4.1.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4818831 | Other | lineage3 | None | ERR4818952 | Other | lineage3 | None | ERR2503420 | Sensitive | lineage4 | fi | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4817554 | Other | lineage1.1.1 | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2514215 | Other | lineage2.2.1 | gb |
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