TB-Profiler result

Run: ERR4814976
Summary

Run ID: ERR4814976

Sample name:

Date: 01-04-2023 13:35:52

Number of reads: 28553

Percentage reads mapped: 3.38

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.99 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6775 c.-527G>T upstream_gene_variant 1.0
gyrA 6778 c.-524C>T upstream_gene_variant 1.0
gyrA 6787 c.-515G>A upstream_gene_variant 1.0
gyrA 6793 c.-509T>C upstream_gene_variant 1.0
gyrB 6798 p.Gly520Glu missense_variant 1.0
gyrA 6820 c.-482C>T upstream_gene_variant 1.0
gyrA 7547 c.246C>T synonymous_variant 1.0
gyrA 7568 c.267_268insA frameshift_variant 1.0
gyrA 7571 c.271delT frameshift_variant 1.0
gyrA 7574 c.273G>T synonymous_variant 1.0
gyrA 7577 c.276C>T synonymous_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7587 p.Leu96Met missense_variant 1.0
gyrA 7601 c.300C>G synonymous_variant 1.0
gyrA 7607 c.306C>G synonymous_variant 1.0
gyrA 7613 c.312G>C synonymous_variant 1.0
gyrA 7614 p.Leu105Met missense_variant 1.0
gyrA 7622 c.321C>T synonymous_variant 1.0
gyrA 7628 c.327G>T synonymous_variant 1.0
gyrA 7631 c.330G>C synonymous_variant 1.0
gyrA 7637 c.336C>T synonymous_variant 1.0
gyrA 7643 c.342C>T synonymous_variant 1.0
rpoB 760199 c.393C>G synonymous_variant 1.0
rpoB 760207 p.Ile134Thr missense_variant 1.0
rpoB 760212 p.Asn136Arg missense_variant 1.0
rpoB 760215 p.Asn137Glu missense_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 1.0
rpoB 760241 c.435G>C synonymous_variant 1.0
rpoB 760244 c.438G>C synonymous_variant 1.0
rpoB 760250 p.Met148Ile missense_variant 1.0
rpoB 762840 p.Pro1012Lys missense_variant 0.83
rpoB 762850 p.Tyr1015Phe missense_variant 0.9
rpoC 762857 c.-513C>T upstream_gene_variant 0.9
rpoB 762858 p.Thr1018Ser missense_variant 0.9
rpoC 762863 c.-507T>G upstream_gene_variant 0.91
rpoB 762878 p.Ile1024Met missense_variant 0.92
rpoB 762879 p.Met1025Leu missense_variant 0.92
rpoC 762899 c.-471G>C upstream_gene_variant 0.93
rpoB 762905 p.Asp1033Glu missense_variant 0.94
rpoC 762911 c.-459C>T upstream_gene_variant 0.94
rpoC 762917 c.-453C>T upstream_gene_variant 0.94
rpoC 762920 c.-450C>T upstream_gene_variant 0.94
rpoC 762929 c.-441G>T upstream_gene_variant 0.94
rpoC 762938 c.-432G>C upstream_gene_variant 1.0
rpoC 762944 c.-426C>T upstream_gene_variant 1.0
rpoC 762962 c.-408C>T upstream_gene_variant 0.93
rpoC 762971 c.-399G>C upstream_gene_variant 0.93
rpoC 762983 c.-387C>T upstream_gene_variant 0.93
rpoC 762989 c.-381G>C upstream_gene_variant 0.93
rpoC 762995 c.-375G>T upstream_gene_variant 0.93
rpoB 763005 p.Cys1067Val missense_variant 0.93
rpoC 763013 c.-357C>A upstream_gene_variant 0.94
rpoC 763022 c.-348C>A upstream_gene_variant 0.95
rpoC 763028 c.-342T>C upstream_gene_variant 0.95
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.94
rpoC 763058 c.-312C>T upstream_gene_variant 1.0
rpoB 763074 p.Thr1090Val missense_variant 1.0
rpoC 763079 c.-291C>T upstream_gene_variant 1.0
rpoC 763082 c.-288C>T upstream_gene_variant 1.0
rpoC 763094 c.-276G>C upstream_gene_variant 1.0
rpoC 763103 c.-267G>A upstream_gene_variant 1.0
rpoC 763109 c.-261C>G upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoB 763118 p.Glu1104Asp missense_variant 1.0
rpoC 763124 c.-246C>T upstream_gene_variant 1.0
rpoB 763130 p.Glu1108Asp missense_variant 1.0
rpoC 763136 c.-234C>T upstream_gene_variant 1.0
rpoC 763139 c.-231C>T upstream_gene_variant 1.0
rpoC 763142 c.-228C>G upstream_gene_variant 1.0
rpoC 763160 c.-210G>T upstream_gene_variant 1.0
rpoC 763163 c.-207C>G upstream_gene_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763181 c.-189G>T upstream_gene_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763573 c.204G>T synonymous_variant 1.0
rpoC 763594 c.225C>T synonymous_variant 1.0
rpoC 763597 c.228G>A synonymous_variant 1.0
rpoC 763603 c.234C>T synonymous_variant 1.0
rpoC 763609 c.240C>T synonymous_variant 1.0
rpoC 763630 c.261G>T synonymous_variant 1.0
rpoC 763633 c.264T>C synonymous_variant 1.0
rpoC 763642 c.273G>C synonymous_variant 1.0
rpoC 763654 c.285C>T synonymous_variant 1.0
rpoC 764329 c.960C>T synonymous_variant 1.0
rpoC 764365 c.996C>T synonymous_variant 1.0
rpoC 764371 c.1002G>C synonymous_variant 1.0
rpoC 764374 c.1005C>T synonymous_variant 1.0
rpoC 764377 c.1008C>G synonymous_variant 1.0
rpoC 764380 c.1011G>C synonymous_variant 1.0
rpoC 764383 c.1014C>G synonymous_variant 1.0
rpoC 764398 c.1029G>C synonymous_variant 1.0
rpoC 764404 c.1035C>T synonymous_variant 1.0
rpoC 764405 c.1036_1038delAGGinsCGT synonymous_variant 1.0
rpoC 764410 c.1041G>C synonymous_variant 1.0
rpoC 764428 c.1059G>C synonymous_variant 1.0
rpoC 764602 c.1233C>T synonymous_variant 1.0
rpoC 764605 c.1236G>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764623 c.1254C>G synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764635 c.1266C>T synonymous_variant 1.0
rpoC 764644 c.1275G>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764656 c.1287C>T synonymous_variant 1.0
rpoC 764659 c.1290C>T synonymous_variant 1.0
rpoC 764660 p.Val431Ile missense_variant 1.0
rpoC 764677 c.1308C>G synonymous_variant 1.0
rpoC 764692 c.1323C>T synonymous_variant 1.0
rpoC 764701 c.1332C>G synonymous_variant 1.0
rpsL 781749 p.Thr64Ser missense_variant 1.0
rpsL 781754 c.195G>T synonymous_variant 1.0
rpsL 781763 c.204C>G synonymous_variant 1.0
rpsL 781766 c.207C>T synonymous_variant 1.0
rpsL 781793 c.234G>C synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781805 c.246G>T synonymous_variant 1.0
rpsL 781811 c.252C>T synonymous_variant 1.0
rpsL 781814 c.255C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781820 c.261G>T synonymous_variant 1.0
rpsL 781829 c.270G>C synonymous_variant 1.0
rpsL 781832 c.273T>G synonymous_variant 1.0
rpsL 781838 c.279G>C synonymous_variant 1.0
rpsL 781851 p.Ile98Val missense_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 1.0
rplC 800621 c.-188G>A upstream_gene_variant 1.0
rplC 800630 c.-179G>T upstream_gene_variant 1.0
rplC 800633 c.-176T>C upstream_gene_variant 1.0
rplC 800639 c.-170C>T upstream_gene_variant 1.0
rplC 800645 c.-164C>T upstream_gene_variant 1.0
rplC 800648 c.-161A>G upstream_gene_variant 1.0
rplC 800654 c.-155T>C upstream_gene_variant 1.0
rplC 800672 c.-137G>C upstream_gene_variant 1.0
rplC 800693 c.-116A>T upstream_gene_variant 1.0
rplC 800702 c.-107G>T upstream_gene_variant 1.0
rplC 800703 c.-106T>C upstream_gene_variant 1.0
rplC 800714 c.-95C>T upstream_gene_variant 1.0
rplC 800715 c.-94A>C upstream_gene_variant 1.0
rplC 800723 c.-86C>A upstream_gene_variant 1.0
rplC 800738 c.-71T>C upstream_gene_variant 1.0
rplC 800741 c.-68C>T upstream_gene_variant 1.0
rplC 800744 c.-65G>A upstream_gene_variant 1.0
rplC 800747 c.-62C>T upstream_gene_variant 1.0
rplC 800756 c.-53C>T upstream_gene_variant 1.0
rplC 800768 c.-41C>A upstream_gene_variant 1.0
rrs 1471918 n.73A>T non_coding_transcript_exon_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 1.0
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471938 n.93T>A non_coding_transcript_exon_variant 1.0
rrs 1471972 n.127T>C non_coding_transcript_exon_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472123 n.278A>G non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>G non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 1.0
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 1.0
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472278 n.433C>T non_coding_transcript_exon_variant 1.0
rrs 1472279 n.434T>C non_coding_transcript_exon_variant 1.0
rrs 1472297 n.454_457delTCCG non_coding_transcript_exon_variant 1.0
rrs 1472304 n.459G>T non_coding_transcript_exon_variant 1.0
rrs 1472307 n.464_471delCTCGGATT non_coding_transcript_exon_variant 1.0
rrs 1472325 n.480G>A non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 1.0
rrs 1472439 n.594C>T non_coding_transcript_exon_variant 1.0
rrs 1472447 n.602C>T non_coding_transcript_exon_variant 1.0
rrs 1472448 n.603T>C non_coding_transcript_exon_variant 1.0
rrs 1472450 n.605A>G non_coding_transcript_exon_variant 1.0
rrs 1472451 n.606C>G non_coding_transcript_exon_variant 1.0
rrs 1472461 n.616G>C non_coding_transcript_exon_variant 1.0
rrs 1472462 n.617T>C non_coding_transcript_exon_variant 1.0
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472471 n.626G>A non_coding_transcript_exon_variant 1.0
rrs 1472489 n.644A>T non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.99
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 1.0
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 1.0
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 1.0
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472836 n.991G>A non_coding_transcript_exon_variant 1.0
rrs 1472837 n.992C>T non_coding_transcript_exon_variant 1.0
rrs 1472843 n.998_999insT non_coding_transcript_exon_variant 1.0
rrs 1472847 n.1003delT non_coding_transcript_exon_variant 1.0
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 1.0
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 1.0
rrs 1472859 n.1014G>T non_coding_transcript_exon_variant 1.0
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 1.0
rrs 1472861 n.1016G>T non_coding_transcript_exon_variant 1.0
rrs 1472874 n.1029C>T non_coding_transcript_exon_variant 1.0
rrs 1472878 n.1033G>A non_coding_transcript_exon_variant 1.0
rrs 1472880 n.1035G>A non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 1.0
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472993 n.1148G>A non_coding_transcript_exon_variant 1.0
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 1.0
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 1.0
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473287 n.1442C>A non_coding_transcript_exon_variant 1.0
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 1.0
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrl 1473668 n.11C>G non_coding_transcript_exon_variant 1.0
rrl 1473697 n.40C>A non_coding_transcript_exon_variant 1.0
rrl 1473699 n.42A>T non_coding_transcript_exon_variant 1.0
rrl 1473700 n.43G>A non_coding_transcript_exon_variant 1.0
rrl 1473701 n.44A>G non_coding_transcript_exon_variant 1.0
rrl 1473718 n.61G>A non_coding_transcript_exon_variant 1.0
rrl 1473731 n.74T>G non_coding_transcript_exon_variant 1.0
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 1.0
rrl 1473751 n.94C>T non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473768 n.111A>G non_coding_transcript_exon_variant 1.0
rrl 1473770 n.113T>G non_coding_transcript_exon_variant 1.0
rrl 1473877 n.220G>T non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>T non_coding_transcript_exon_variant 1.0
rrl 1473911 n.254G>A non_coding_transcript_exon_variant 1.0
rrl 1473918 n.261C>T non_coding_transcript_exon_variant 1.0
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1474112 n.455T>G non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474178 n.522dupC non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524C>G non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>T non_coding_transcript_exon_variant 1.0
rrl 1474287 n.630T>C non_coding_transcript_exon_variant 1.0
rrl 1474288 n.631C>T non_coding_transcript_exon_variant 0.92
rrl 1474289 n.632C>T non_coding_transcript_exon_variant 0.92
rrl 1474293 n.637_649delCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474351 n.694G>C non_coding_transcript_exon_variant 1.0
rrl 1474353 n.696A>G non_coding_transcript_exon_variant 1.0
rrl 1474447 n.790G>A non_coding_transcript_exon_variant 1.0
rrl 1474451 n.794T>C non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474487 n.830G>T non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>A non_coding_transcript_exon_variant 1.0
rrl 1474506 n.849C>T non_coding_transcript_exon_variant 1.0
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 1.0
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474517 n.860C>G non_coding_transcript_exon_variant 0.98
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474628 n.971C>T non_coding_transcript_exon_variant 1.0
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 1.0
rrl 1474636 n.979A>C non_coding_transcript_exon_variant 1.0
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 1.0
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 1.0
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 1.0
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 1.0
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 1.0
rrl 1474824 n.1167A>G non_coding_transcript_exon_variant 1.0
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474896 n.1239A>G non_coding_transcript_exon_variant 1.0
rrl 1474901 n.1244A>G non_coding_transcript_exon_variant 0.95
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474921 n.1264C>T non_coding_transcript_exon_variant 1.0
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1474952 n.1295_1296insAT non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475094 n.1437C>T non_coding_transcript_exon_variant 1.0
rrl 1475113 n.1456C>T non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475116 n.1459G>A non_coding_transcript_exon_variant 1.0
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 1.0
rrl 1475171 n.1514C>T non_coding_transcript_exon_variant 1.0
rrl 1475201 n.1544G>C non_coding_transcript_exon_variant 1.0
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 1.0
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 1.0
rrl 1475212 n.1555A>G non_coding_transcript_exon_variant 1.0
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 1.0
rrl 1475221 n.1564C>G non_coding_transcript_exon_variant 1.0
rrl 1475223 n.1566G>A non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1823A>G non_coding_transcript_exon_variant 1.0
rrl 1475481 n.1824C>G non_coding_transcript_exon_variant 1.0
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0
rrl 1475485 n.1828C>T non_coding_transcript_exon_variant 1.0
rrl 1475499 n.1842C>G non_coding_transcript_exon_variant 1.0
rrl 1475514 n.1857G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 1.0
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 1.0
rrl 1475542 n.1885A>G non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 1.0
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 1.0
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475696 n.2039T>A non_coding_transcript_exon_variant 1.0
rrl 1475703 n.2046A>T non_coding_transcript_exon_variant 1.0
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 1.0
rrl 1475757 n.2100_2101insG non_coding_transcript_exon_variant 1.0
rrl 1475769 n.2112_2113insC non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 1.0
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 1.0
rrl 1475902 n.2245T>C non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 1.0
rrl 1476029 n.2372A>T non_coding_transcript_exon_variant 1.0
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>A non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476091 n.2434_2435insC non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476100 n.2443A>C non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2450delA non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 0.96
rrl 1476113 n.2456T>G non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476267 n.2610G>T non_coding_transcript_exon_variant 1.0
rrl 1476269 n.2612C>G non_coding_transcript_exon_variant 1.0
rrl 1476274 n.2617G>C non_coding_transcript_exon_variant 1.0
rrl 1476276 n.2619C>A non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>G non_coding_transcript_exon_variant 1.0
rrl 1476298 n.2641C>G non_coding_transcript_exon_variant 1.0
rrl 1476300 n.2643G>T non_coding_transcript_exon_variant 1.0
rrl 1476301 n.2644A>T non_coding_transcript_exon_variant 1.0
rrl 1476309 n.2652G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476523 n.2867delC non_coding_transcript_exon_variant 1.0
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 1.0
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 1.0
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 1.0
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 1.0
rrl 1476600 n.2943A>T non_coding_transcript_exon_variant 1.0
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 1.0
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476624 n.2967T>A non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 1.0
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 1.0
rrl 1476661 n.3004A>G non_coding_transcript_exon_variant 1.0
rrl 1476665 n.3008T>G non_coding_transcript_exon_variant 1.0
rrl 1476666 n.3009C>T non_coding_transcript_exon_variant 1.0
rrl 1476675 n.3018C>T non_coding_transcript_exon_variant 1.0
rpsA 1833631 p.Ile30Met missense_variant 1.0
rpsA 1833649 c.108C>T synonymous_variant 1.0
rpsA 1833658 c.117C>T synonymous_variant 1.0
rpsA 1833668 p.Ile43Val missense_variant 1.0
rpsA 1833673 c.132C>T synonymous_variant 1.0
rpsA 1833676 c.135A>G synonymous_variant 1.0
rpsA 1833679 c.138G>T synonymous_variant 1.0
rpsA 1833685 c.144G>C synonymous_variant 1.0
rpsA 1833694 c.153G>T synonymous_variant 1.0
rpsA 1833697 c.156C>T synonymous_variant 1.0
rpsA 1833718 c.177C>T synonymous_variant 0.9
rpsA 1833724 c.183C>T synonymous_variant 0.9
rpsA 1833727 c.186G>C synonymous_variant 0.89
rpsA 1833730 c.189C>T synonymous_variant 0.88
rpsA 1833733 c.192C>T synonymous_variant 0.88
rpsA 1833734 p.Ala65Ser missense_variant 0.88
rpsA 1833760 c.219C>T synonymous_variant 0.75
rpsA 1833862 c.321G>T synonymous_variant 0.4
rpsA 1833877 c.336C>T synonymous_variant 0.75
rpsA 1833893 p.Ala118Gln missense_variant 0.75
rpsA 1833907 p.Lys122Asn missense_variant 0.75
rpsA 1833913 c.372G>A synonymous_variant 0.67
rpsA 1833914 p.Ala125Pro missense_variant 0.67
rpsA 1833919 c.378C>T synonymous_variant 0.67
rpsA 1833921 p.Lys127Thr missense_variant 0.67
rpsA 1833925 c.384C>T synonymous_variant 0.67
rpsA 1833928 c.387G>C synonymous_variant 0.67
rpsA 1833949 c.408T>C synonymous_variant 0.78
rpsA 1833970 c.429G>C synonymous_variant 0.92
rpsA 1833979 c.438T>C synonymous_variant 0.92
rpsA 1833988 c.447C>G synonymous_variant 0.92
rpsA 1833991 c.450C>T synonymous_variant 0.92
rpsA 1833994 c.453G>C synonymous_variant 0.92
rpsA 1833997 c.456G>C synonymous_variant 0.92
rpsA 1834000 c.459G>C synonymous_variant 0.93
rpsA 1834009 c.468C>T synonymous_variant 0.94
rpsA 1834012 c.471G>T synonymous_variant 0.94
rpsA 1834015 c.474G>C synonymous_variant 0.94
rpsA 1834024 c.483G>C synonymous_variant 0.95
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834040 p.Lys167Gln missense_variant 1.0
rpsA 1834069 c.528G>C synonymous_variant 1.0
rpsA 1834090 c.549G>C synonymous_variant 1.0
rpsA 1834093 c.552G>T synonymous_variant 1.0
rpsA 1834102 c.561T>C synonymous_variant 1.0
rpsA 1834105 c.564C>T synonymous_variant 1.0
rpsA 1834108 c.567C>A synonymous_variant 1.0
rpsA 1834114 c.573G>C synonymous_variant 1.0
rpsA 1834129 c.588C>T synonymous_variant 1.0
rpsA 1834135 c.594G>C synonymous_variant 1.0
rpsA 1834172 p.Ile211Val missense_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834189 c.648G>T synonymous_variant 1.0
rpsA 1834195 c.654G>C synonymous_variant 1.0
rpsA 1834213 c.672G>A synonymous_variant 1.0
rpsA 1834234 c.693G>T synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>T synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834294 c.753G>T synonymous_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 1.0
rpsA 1834333 p.Asp264Glu missense_variant 1.0
rpsA 1834340 p.Met267Leu missense_variant 1.0
rpsA 1834343 p.Asp268Asn missense_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834354 c.813G>C synonymous_variant 1.0
rpsA 1834360 c.819G>C synonymous_variant 1.0
rpsA 1834361 c.820T>C synonymous_variant 1.0
rpsA 1834366 c.825A>C synonymous_variant 1.0
rpsA 1834369 c.828C>G synonymous_variant 1.0
rpsA 1834375 c.834G>T synonymous_variant 1.0
rpsA 1834387 c.846C>T synonymous_variant 1.0
rpsA 1834396 c.855G>C synonymous_variant 1.0
rpsA 1834397 p.His286Val missense_variant 1.0
rpsA 1834417 c.876G>A synonymous_variant 1.0
rpsA 1834423 c.882G>C synonymous_variant 1.0
rpsA 1834429 c.888C>T synonymous_variant 1.0
rpsA 1834432 c.891G>T synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834504 c.963G>T synonymous_variant 1.0
rpsA 1834600 c.1059G>C synonymous_variant 0.86
rpsA 1834606 c.1065C>T synonymous_variant 0.86
rpsA 1834612 c.1071G>T synonymous_variant 0.86
rpsA 1834618 c.1077G>C synonymous_variant 0.86
rpsA 1834619 c.1078T>C synonymous_variant 0.86
rpsA 1834624 c.1083G>C synonymous_variant 0.86
rpsA 1834633 c.1092A>G synonymous_variant 0.86
rpsA 1834636 c.1095C>T synonymous_variant 0.86
rpsA 1834637 p.Asn366Asp missense_variant 0.86
rpsA 1834647 p.Tyr369Phe missense_variant 0.88
rpsA 1834654 c.1113G>A synonymous_variant 0.88
rpsA 1834667 p.Ala376Thr missense_variant 0.88
thyX 3067474 p.Pro158Ala missense_variant 1.0
clpC1 4038860 c.1845G>C synonymous_variant 1.0
clpC1 4038878 c.1827A>G synonymous_variant 1.0
clpC1 4038890 c.1815G>A synonymous_variant 1.0
clpC1 4038911 c.1794G>T synonymous_variant 1.0
clpC1 4038914 c.1791G>T synonymous_variant 1.0
clpC1 4038917 c.1788C>T synonymous_variant 1.0
clpC1 4038923 c.1782A>C synonymous_variant 1.0
clpC1 4038926 c.1779G>T synonymous_variant 1.0
clpC1 4038929 c.1776G>T synonymous_variant 1.0
clpC1 4038932 c.1773G>T synonymous_variant 1.0
clpC1 4038935 c.1770C>T synonymous_variant 1.0
clpC1 4038941 c.1764G>C synonymous_variant 1.0
clpC1 4038953 c.1752A>G synonymous_variant 1.0
clpC1 4038962 c.1743C>T synonymous_variant 1.0
clpC1 4038974 c.1731T>C synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039832 c.873C>G synonymous_variant 1.0
clpC1 4039838 p.Leu289Ile missense_variant 1.0
clpC1 4039847 c.858C>T synonymous_variant 1.0
clpC1 4039856 c.849C>T synonymous_variant 1.0
clpC1 4039871 p.Thr278Gln missense_variant 1.0
clpC1 4039877 c.828C>T synonymous_variant 1.0
clpC1 4039898 c.807C>G synonymous_variant 1.0
clpC1 4039901 c.804C>T synonymous_variant 1.0
clpC1 4039904 c.801A>G synonymous_variant 1.0