EBG00000313339 - n.2619C>A
Drug resistance types
21 Sensitive
21 RR-TB
11 HR-TB
19 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 7 |
| lineage4.9 | 24 |
| lineage2.2.1 | 25 |
| lineage4.1.2 | 2 |
| lineage4.9;La1.3 | 1 |
| lineage4.1.2.1 | 21 |
| lineage6 | 2 |
| lineage3.1.1 | 4 |
| lineage4 | 3 |
| La1.3 | 1 |
| lineage4.4.1.1 | 5 |
| lineage4.3 | 1 |
| lineage3 | 27 |
| lineage4.3.1.1 | 2 |
| lineage4.9;lineage1.1 | 1 |
| lineage2.2.2 | 2 |
| La2 | 1 |
| lineage4.1.1.3 | 3 |
| lineage4.8 | 16 |
| lineage1.1.2 | 5 |
| lineage4.1.3 | 2 |
| lineage4.4.2 | 1 |
| lineage4.1 | 2 |
| lineage3.1.3 | 1 |
| lineage5 | 1 |
| lineage4.2.2.1 | 1 |
| 1 | |
| lineage4.7 | 2 |
| lineage4.2.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.6.2.2 | 5 |
| lineage4.3.2 | 1 |
| lineage4.3.4.2 | 2 |
| lineage3.1.2 | 2 |
| lineage4.1.1.3.1 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.5 | 1 |
| lineage1.1.3.1 | 1 |
| La3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage2.1 | 1 |
| lineage4.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 45 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR10796563 | Other | lineage4.3.3 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR3806588 | Other | lineage6 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769472 | Other | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117788 | Other | lineage3 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | ERR9787033 | Sensitive | lineage6 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11349191 | Pre-XDR-TB | lineage4.3.3 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR15276982 | Pre-XDR-TB | lineage3 | None | SRR13888750 | Other | La2 | None | SRR16156775 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18002961 | Other | lineage2.2.1 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR19303805 | Other | lineage4.8 | None | SRR18911555 | Other | lineage4.1.2.1 | None | SRR19303985 | Other | lineage4.8 | None | ERR4815104 | Other | lineage4.8 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | SRR3675475 | Other | lineage4.1.1.3 | None | ERR4815780 | MDR-TB | lineage4.1.3 | None | ERR4815467 | Other | lineage3 | None | ERR1665404 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814584 | Sensitive | lineage4.4.2 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4814763 | Other | lineage2.2.1 | None | ERR4819579 | HR-TB | lineage4.3.3 | None | ERR4815502 | Other | lineage4.1 | None | ERR4814841 | Other | lineage4.1 | None | ERR4814834 | Other | lineage3 | None | ERR4814952 | Sensitive | lineage3 | None | ERR4814976 | Other | lineage4.9 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815053 | Other | lineage4.1.2.1 | gb | ERR4816967 | RR-TB | lineage5 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR4816147 | RR-TB | lineage2.2.1 | gb | ERR4816300 | Other | lineage4.1.2.1 | None | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816243 | Sensitive | lineage3 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR4816419 | HR-TB | lineage2.2.1 | gb | ERR4816322 | Other | lineage4.9 | None | ERR2446509 | Other | lineage3 | nl | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816462 | Other | lineage4.1.2.1 | None | ERR4817131 | Pre-XDR-TB | None | ERR2229234 | RR-TB | lineage4.8 | None | ERR2229233 | Sensitive | lineage4 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816650 | Sensitive | lineage4.1.2.1 | None | ERR4817398 | Other | lineage3.1.1 | None | ERR4817189 | Other | lineage4.7 | None | ERR4816831 | Other | lineage4.1.2.1 | None | ERR4817434 | Other | lineage3 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4816856 | Other | lineage4.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4817306 | Other | lineage3 | gb | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2513082 | Other | lineage4.1.2.1 | gb | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR4818785 | RR-TB | lineage4.1.2.1 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR2513231 | RR-TB | lineage4.3.4.2 | None | ERR2512443 | Other | lineage4.8 | gb | ERR3276144 | Other | lineage3 | nl | ERR4818200 | Other | lineage3.1.2 | gb | ERR4818484 | Sensitive | lineage3 | None | ERR4818431 | Other | lineage1.1.2 | gb | ERR4818952 | Other | lineage3 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR4818556 | Other | lineage3 | None | ERR4818570 | Other | lineage4.3.3 | None | ERR2512841 | HR-TB | lineage2.2.1 | gb | ERR4819166 | Other | lineage3 | gb | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2513682 | Sensitive | lineage3 | None | ERR4817571 | Sensitive | lineage4.1.3 | gb | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4819210 | Other | lineage2.2.1.2 | gb | ERR4820290 | Other | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR2514215 | Other | lineage2.2.1 | gb | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR2513904 | Other | lineage3.1.2.2 | gb | ERR2513910 | Other | lineage3 | gb | ERR4819324 | Other | lineage4.8 | gb | ERR4819528 | RR-TB | lineage3 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR4819593 | Other | lineage4.5 | None | ERR4819532 | HR-TB | lineage4.6.2.2 | gb | ERR4819533 | Other | lineage1.1.2 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4820891 | Other | lineage4.9 | gb | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR2514533 | Other | lineage4.9 | None | ERR2514550 | MDR-TB | lineage3 | gb | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820001 | Other | lineage4.8 | gb | ERR2515032 | Other | lineage3 | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4820130 | Other | lineage3 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4821105 | Other | lineage3.1.2 | gb | ERR4820151 | RR-TB | lineage4.8 | None | ERR4820194 | Other | La3 | None | SRR6046089 | Other | lineage4.1.2.1 | None | ERR4821102 | Sensitive | lineage2.2.1 | gb | SRR5526157 | MDR-TB | lineage2.2.1.1 | None | ERR4821477 | Other | lineage4.8 | None | ERR4821371 | Other | lineage4.8 | gb | SRR5535697 | HR-TB | lineage4.1.2 | None | ERR4822085 | Other | lineage4.8 | gb | ERR4821611 | Sensitive | lineage3 | None | ERR4822133 | MDR-TB | lineage3 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4822152 | Sensitive | lineage4.1.2.1 | gb | SRR5818397 | Other | lineage4.9 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821761 | Other | lineage3 | gb | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818389 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR6044958 | Other | lineage4.4.1.1 | None | SRR5818446 | Other | lineage4.9 | None | SRR5818452 | Other | lineage4.9 | None | SRR5818436 | Sensitive | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR4828962 | Other | lineage4.1.4 | it | SRR6046208 | Other | lineage4 | None | SRR6046343 | Other | lineage2.2.1 | None | SRR6046534 | Other | lineage1.1.2 | None | ERR4829835 | HR-TB | lineage4.8 | it | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR4832002 | Pre-XDR-TB | lineage2.1 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6046646 | Other | lineage4.7 | gb | SRR8651616 | MDR-TB | lineage2.2.1 | None | ERR3275190 | Other | lineage3 | nl | SRR7131152 | MDR-TB | lineage2.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None |
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