EBG00000313339 - n.895C>T
Drug resistance types
37 Sensitive
29 RR-TB
55 HR-TB
13 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
119 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 13 |
| La1.7.1 | 1 |
| lineage4.9 | 64 |
| lineage4.3.2.1 | 2 |
| lineage4.8 | 51 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2.1 | 15 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4 | 2 |
| La3;lineage4.9 | 8 |
| lineage4.3.4.1 | 3 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2.1 | 4 |
| lineage6.3.1 | 1 |
| lineage2.2 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.8;lineage4.9 | 1 |
| La1.3 | 5 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.1 | 3 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.8.1 | 4 |
| lineage4.5 | 2 |
| lineage6.1.3 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.9.1 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.3.3 | 2 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage1.1.2 | 1 |
| La1.2.BCG | 1 |
| La1.2 | 2 |
| lineage2.2.2 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| La3;lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage1.1.3.2 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.7 | 1 |
| La3;lineage4 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;M.canetti | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.2 | 2 |
| lineage3.1.2.1 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.1 | 2 |
| La1.6 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.2 | 1 |
| La1.4 | 1 |
| M.canetti | 1 |
| lineage5.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 258 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4817434 | Other | lineage3 | None | SRR7240538 | Other | La1.7.1 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR228175 | Sensitive | lineage3 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR978735 | Other | lineage4.8 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR978762 | Other | lineage4.8 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR978748 | Other | lineage4.8 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3283032 | Other | lineage4.9 | None | ERR911930 | Other | lineage4.8 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3275190 | Other | lineage3 | nl | ERR4818440 | Other | lineage6.3.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4814976 | Other | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR4769552 | Sensitive | La1.3 | None | ERR2228910 | Other | lineage4.8 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR1173421 | Other | lineage4.9 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR2228899 | Other | lineage4.8 | None | ERR2228900 | Other | lineage4.8 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR7236330 | Other | La1.8.1 | None | ERR4769516 | Sensitive | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR21713567 | Other | lineage4.5 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR4769452 | Other | lineage4.9 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR9786711 | Other | lineage4.6.2.2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR2100532 | Sensitive | lineage3 | None | ERR978761 | Other | lineage4.8 | None | SRR20970016 | Other | lineage2.2 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR752229 | Other | lineage4.5 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR867566 | Other | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | SRR6046492 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4819314 | HR-TB | lineage1.1.1 | None | ERR228180 | Sensitive | lineage3 | None | SRR6152899 | MDR-TB | lineage2.2.2 | ca | ERR4799025 | Other | lineage4.8 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2446509 | Other | lineage3 | nl | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR2228838 | Other | lineage4.8 | None | SRR14782054 | Other | lineage4.9 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR6046593 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | ERR3797019 | Other | La1.8.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | ERR10796559 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR978693 | Other | lineage4.8 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR5431730 | Other | La1.8.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR1172885 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR3801503 | Other | lineage4.6.2.2 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR2229204 | Other | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR5341456 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6045053 | Other | lineage4 | None | ERR266125 | Other | La3;M.canetti | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4769497 | Other | La1;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | ERR978747 | Other | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | ERR2229811 | Other | lineage4.8 | dk | ERR978726 | RR-TB | lineage4.8 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR4818536 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR4769514 | Other | La1.3 | None | SRR6152980 | HR-TB | lineage4.8 | ca | ERR978727 | Other | lineage4.8 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR11268038 | Other | La1.6 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR4820829 | Other | lineage4.8 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR4769495 | Other | La1.3 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR978751 | Other | lineage4.8 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR2229366 | Other | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR978752 | Other | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR270777 | HR-TB | lineage4.1.2 | None | SRR10808730 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR2228965 | Other | lineage4.8 | None | ERR4769555 | Sensitive | La1.3 | None | ERR4769450 | Other | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR266124 | Other | M.canetti | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR017781 | Other | lineage3 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR2515230 | Sensitive | lineage4.8 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR978733 | RR-TB | lineage4.8 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR978694 | Other | lineage4.8 | None | ERR978756 | Other | lineage4.8 | None | ERR4769408 | Other | La1.3 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR019855 | Other | lineage3 | None | SRR5535933 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR2100537 | Sensitive | lineage3 | None |
|---|
