EBG00000313339 - n.895C>T
Drug resistance types
57 Sensitive
27 RR-TB
69 HR-TB
18 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 4 |
| 59 | |
| lineage4.9 | 48 |
| lineage4 | 23 |
| lineage4.6.2.2 | 3 |
| La1.3 | 7 |
| La1.2 | 3 |
| lineage4.9;La1.3 | 3 |
| lineage2.2.1 | 23 |
| lineage1.1.3.2 | 1 |
| La1 | 1 |
| lineage2.2 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.2.1 | 1 |
| lineage4.1.2.1 | 12 |
| lineage1.1.2 | 4 |
| lineage4.5 | 3 |
| lineage4.8 | 34 |
| lineage6.1.3 | 1 |
| lineage4.4.1.1 | 9 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.6.1 | 1 |
| lineage3 | 24 |
| lineage4.2.2.1 | 1 |
| lineage1.1.1 | 4 |
| La1.4 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1.3.1 | 4 |
| lineage4.3.4 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.4.1 | 1 |
| lineage2.1 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4.1 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.3.4.2 | 1 |
| lineage6.3.1 | 1 |
| lineage4.6 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4.1.1.3.1;lineage3.1.2 | 1 |
| lineage4.4.1.2 | 2 |
| lineage5.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.9.1 | 2 |
| lineage4.3.4.1 | 3 |
| lineage4.3.3 | 1 |
| La1.6 | 1 |
| lineage4.7 | 1 |
| lineage4.4.2 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 319 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3797067 | Other | La1.8.1 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4769419 | Other | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR4769495 | Other | La1.3 | None | ERR4769427 | Other | La1.2 | None | ERR4769452 | HR-TB | None | ERR4769472 | Other | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769418 | Other | La1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769548 | Other | lineage4.9 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR4798262 | HR-TB | La1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR5864927 | MDR-TB | lineage2.2.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811493 | HR-TB | None | ERR5863736 | MDR-TB | lineage2.2.1 | None | ERR4800197 | HR-TB | None | ERR5863990 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864324 | MDR-TB | lineage2.2.1 | None | ERR5866478 | MDR-TB | lineage4.2.1 | None | ERR5865953 | MDR-TB | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6358991 | HR-TB | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR736816 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9119669 | HR-TB | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR10272572 | Sensitive | lineage4.4.1.1 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315641 | MDR-TB | lineage4.4.1.1.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173717 | MDR-TB | lineage4.6.1 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180204 | Sensitive | lineage3 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13180203 | Sensitive | lineage4.2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16370646 | HR-TB | lineage2.2.1 | None | SRR19303914 | Sensitive | lineage4.5 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | None | SRR16278274 | Other | La1.4 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4815171 | HR-TB | lineage1.1.2 | None | SRR20995191 | Sensitive | lineage4.4.1.1 | None | ERR2229577 | Sensitive | lineage4.8 | None | SRR8692759 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692818 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692871 | Other | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692887 | Other | None | ERR4815143 | HR-TB | lineage4.2.2.2 | None | ERR4814617 | Other | lineage1.1.3.1 | None | ERR4815257 | HR-TB | lineage4.4.1.1 | None | ERR2229811 | Other | lineage4.8 | dk | ERR4815193 | MDR-TB | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | ERR161039 | Sensitive | lineage4.3.4 | None | ERR181744 | HR-TB | None | ERR4814976 | Other | lineage4.9 | None | SRR3675234 | Other | None | ERR1750909 | RR-TB | lineage4.1.1.2 | None | ERR4815488 | HR-TB | lineage4.4.1 | None | SRR3675270 | HR-TB | None | ERR2229541 | Other | lineage4.8 | None | ERR176751 | HR-TB | None | ERR4817017 | Sensitive | lineage4.9 | None | ERR2229810 | Other | lineage4.8 | None | ERR2228965 | Other | lineage4.8 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816079 | Sensitive | lineage4.1.2.1 | None | ERR212123 | Other | None | ERR4816192 | Sensitive | lineage3 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212034 | HR-TB | None | ERR2229136 | RR-TB | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | ERR212121 | HR-TB | None | ERR2229366 | Other | lineage4.8 | None | ERR4817131 | Pre-XDR-TB | None | ERR2229204 | Other | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | ERR4817234 | Other | lineage4.1.1.3 | None | ERR2229801 | Other | lineage4 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR4817194 | Other | lineage4.1.2.1 | None | ERR2229436 | Other | lineage4.8 | None | ERR4817434 | Other | lineage3 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR2229804 | Other | lineage4 | None | ERR4816907 | Other | lineage1.1.1 | None | ERR2229505 | Other | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR2228910 | Other | lineage4.8 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR228175 | Sensitive | lineage3 | None | ERR228180 | Sensitive | lineage3 | None | ERR3275190 | Other | lineage3 | nl | ERR2446566 | Other | lineage4.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | SRR4035600 | RR-TB | lineage4.3.4.2.1 | None | ERR2510820 | Other | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818128 | RR-TB | lineage4.1.2.1 | None | ERR4817540 | Other | lineage4.3.4.2 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR2512849 | RR-TB | lineage1.1.3.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4817584 | MDR-TB | lineage3 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5007186 | Other | lineage4.6 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR2100537 | Sensitive | lineage3 | None | SRR2100532 | Sensitive | lineage3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4820290 | Other | lineage3 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819462 | Other | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819423 | Other | lineage4.6.2.2 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR6152899 | MDR-TB | lineage2.2.2 | ca | ERR4819602 | Sensitive | lineage4.9 | None | SRR2100877 | HR-TB | lineage4.1.2 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR1035138 | MDR-TB | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR4819784 | Other | lineage4.1.2.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR5341456 | Other | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6397579 | Other | lineage4.4.1.2 | ca | SRR5341313 | HR-TB | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341315 | Sensitive | None | ERR2515022 | Sensitive | lineage3 | None | ERR4820829 | Other | lineage4.8 | None | ERR6359082 | Other | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR4820075 | Other | lineage4.1.2.1 | None | ERR4820130 | Other | lineage3 | None | SRR5341330 | HR-TB | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821799 | Other | lineage2.2.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR2693231 | Other | None | ERR2446509 | Other | lineage3 | nl | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR5431730 | Other | La1.8.1 | None | ERR4821054 | Other | lineage3 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | ERR4821119 | Other | lineage4.4.1.1 | None | SRR5535933 | HR-TB | None | ERR2693257 | Other | None | ERR4821420 | Other | lineage4.1.2.1 | None | ERR270777 | HR-TB | lineage4.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821286 | Other | lineage4.8 | None | ERR4821372 | Other | lineage4.1.2.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821477 | Other | lineage4.8 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | ERR2693227 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR2693232 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045264 | Sensitive | lineage2.2.1 | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046397 | Other | None | SRR6046299 | HR-TB | None | SRR6046617 | HR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | ERR4828879 | MDR-TB | lineage3 | None | SRR6046612 | Other | lineage1.1.1.1 | None | SRR6046644 | HR-TB | None | SRR6397815 | Other | lineage4.4.1.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4831117 | HR-TB | None | SRR6964650 | Sensitive | lineage3 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7131296 | Other | lineage4.3.3 | None | ERR11268038 | Other | La1.6 | None | SRR7496471 | Sensitive | None | ERR11465152 | Sensitive | lineage4.3.4.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | SRR7517748 | HR-TB | lineage4.4.1.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR10796630 | HR-TB | None | ERR017781 | Other | lineage3 | None | ERR1023525 | HR-TB | lineage4 | None | ERR10796559 | Other | lineage4.9 | None | ERR019855 | Other | lineage3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR1034634 | HR-TB | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283014 | HR-TB | None | ERR3283024 | Other | None | ERR3283028 | Other | None | ERR3283025 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797044 | Other | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None |
|---|
