TB-Profiler result

Run: ERR2228890
Summary

Run ID: ERR2228890

Sample name:

Date: 31-03-2023 16:24:50

Number of reads: 153319

Percentage reads mapped: 17.42

Strain: lineage4

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.96 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 1.0 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2288756 c.485delG frameshift_variant 0.25 pyrazinamide
ethA 4326132 c.1341delC frameshift_variant 0.5 ethionamide, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7608 p.Trp103Arg missense_variant 0.29
gyrA 9616 p.Ser772Ile missense_variant 0.18
mshA 575589 p.Arg81His missense_variant 0.5
mshA 576270 p.Ser308Leu missense_variant 0.67
rpoB 759638 c.-169T>G upstream_gene_variant 0.67
rpoB 762197 c.2391C>T synonymous_variant 0.33
rpoB 762209 c.2403C>T synonymous_variant 0.33
rpoB 762218 c.2412T>C synonymous_variant 0.33
rpoB 762233 c.2427G>C synonymous_variant 0.4
rpoB 762236 c.2430G>T synonymous_variant 0.4
rpoB 762245 c.2439G>T synonymous_variant 0.4
rpoB 762254 c.2448T>C synonymous_variant 0.4
rpoB 762257 c.2451C>G synonymous_variant 0.4
rpoB 762284 c.2478G>C synonymous_variant 0.67
rpoB 762531 p.Ile909Phe missense_variant 0.5
rpoB 762878 p.Ile1024Met missense_variant 0.62
rpoB 762879 p.Met1025Leu missense_variant 0.62
rpoC 762899 c.-471G>T upstream_gene_variant 0.67
rpoC 762920 c.-450C>T upstream_gene_variant 0.62
rpoC 762929 c.-441G>C upstream_gene_variant 0.68
rpoC 762959 c.-411G>T upstream_gene_variant 0.75
rpoC 762971 c.-399G>C upstream_gene_variant 0.67
rpoC 762983 c.-387C>T upstream_gene_variant 0.47
rpoC 762989 c.-381G>A upstream_gene_variant 0.5
rpoC 762995 c.-375G>T upstream_gene_variant 0.4
rpoB 763002 c.3197dupA frameshift_variant 0.4
rpoB 763006 c.3201delC frameshift_variant 0.4
rpoB 763017 p.Gln1071Glu missense_variant 0.3
rpoC 763025 c.-345C>T upstream_gene_variant 0.22
rpoC 763094 c.-276G>C upstream_gene_variant 0.14
rpoC 763097 c.-273C>T upstream_gene_variant 0.15
rpoB 763098 p.Glu1098* stop_gained 0.15
rpoB 763162 p.Leu1119His missense_variant 0.2
rpoC 763528 c.159G>A synonymous_variant 0.69
rpoC 763534 c.165T>C synonymous_variant 0.7
rpoC 763537 c.168C>G synonymous_variant 0.71
rpoC 763546 c.177A>G synonymous_variant 0.8
rpoC 763570 c.201G>C synonymous_variant 0.83
rpoC 763573 c.204G>C synonymous_variant 0.83
rpoC 763594 c.225C>T synonymous_variant 0.79
rpoC 763622 p.Ala85Ser missense_variant 0.89
rpoC 763627 p.Lys86Asn missense_variant 0.88
rpoC 763642 c.273G>T synonymous_variant 0.75
rpoC 763648 c.279C>A synonymous_variant 0.5
rpoC 763661 p.Ala98Ser missense_variant 0.67
rpoC 764612 p.Gln415Lys missense_variant 0.5
rpoC 766834 p.Glu1155Asp missense_variant 0.25
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776386 p.Pro699Ser missense_variant 0.25
mmpL5 777738 p.Ala248Asp missense_variant 0.33
mmpL5 778084 p.Pro133Ser missense_variant 0.15
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.75
rpsL 781658 c.99A>G synonymous_variant 0.75
rpsL 781679 c.120C>G synonymous_variant 0.56
rpsL 781682 c.123T>G synonymous_variant 0.56
rpsL 781706 c.147T>G synonymous_variant 0.38
rpsL 781709 c.150G>A synonymous_variant 0.38
rpsL 781843 p.Tyr95Phe missense_variant 0.22
rplC 800717 c.-92C>T upstream_gene_variant 0.5
fbiC 1303747 p.Thr273Ala missense_variant 1.0
fbiC 1305380 p.Ser817Leu missense_variant 0.33
embR 1416642 p.Ala236Ser missense_variant 0.5
embR 1417530 c.-183T>A upstream_gene_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472085 n.240C>T non_coding_transcript_exon_variant 0.33
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.43
rrs 1472107 n.262A>G non_coding_transcript_exon_variant 0.43
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.29
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.43
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.33
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.33
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.33
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.69
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.75
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 1.0
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 1.0
rrs 1472368 n.523A>G non_coding_transcript_exon_variant 1.0
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.88
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.88
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.82
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.6
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 0.5
rrs 1472507 n.662C>A non_coding_transcript_exon_variant 0.64
rrs 1472522 n.677T>G non_coding_transcript_exon_variant 0.64
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.79
rrs 1472571 n.726G>T non_coding_transcript_exon_variant 0.77
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.79
rrs 1472582 n.737G>T non_coding_transcript_exon_variant 0.79
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.79
rrs 1472585 n.740A>C non_coding_transcript_exon_variant 0.79
rrs 1472623 n.778A>C non_coding_transcript_exon_variant 0.85
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 1.0
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 1.0
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 1.0
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.88
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.83
rrs 1472767 n.922G>C non_coding_transcript_exon_variant 1.0
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 1.0
rrs 1472812 n.967A>T non_coding_transcript_exon_variant 1.0
rrs 1472954 n.1110delC non_coding_transcript_exon_variant 0.75
rrs 1472958 n.1113_1114insC non_coding_transcript_exon_variant 0.75
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.91
rrs 1472986 n.1141_1142insA non_coding_transcript_exon_variant 0.95
rrs 1472989 n.1145delA non_coding_transcript_exon_variant 0.95
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.95
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.94
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.88
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.75
rrs 1473091 n.1246G>A non_coding_transcript_exon_variant 0.75
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.75
rrs 1473094 n.1249T>G non_coding_transcript_exon_variant 0.75
rrs 1473099 n.1254T>G non_coding_transcript_exon_variant 0.75
rrs 1473100 n.1255G>C non_coding_transcript_exon_variant 0.75
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.75
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.75
rrs 1473109 n.1264T>G non_coding_transcript_exon_variant 0.6
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.6
rrs 1473120 n.1275C>T non_coding_transcript_exon_variant 0.6
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.6
rrs 1473122 n.1277T>G non_coding_transcript_exon_variant 0.6
rrs 1473123 n.1278A>G non_coding_transcript_exon_variant 0.6
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.71
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.87
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.87
rrs 1473226 n.1381C>G non_coding_transcript_exon_variant 0.95
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 1.0
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 1.0
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473292 n.1447G>T non_coding_transcript_exon_variant 1.0
rrs 1473294 n.1449A>G non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 1.0
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 1.0
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 1.0
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 1.0
rrs 1473324 n.1479G>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474186 n.529A>G non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474202 n.545T>G non_coding_transcript_exon_variant 1.0
rrl 1474218 n.561T>G non_coding_transcript_exon_variant 1.0
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 1.0
rrl 1474264 n.607T>G non_coding_transcript_exon_variant 0.75
rrl 1474265 n.608G>T non_coding_transcript_exon_variant 1.0
rrl 1474266 n.609T>C non_coding_transcript_exon_variant 1.0
rrl 1474269 n.612C>A non_coding_transcript_exon_variant 1.0
rrl 1474271 n.614A>G non_coding_transcript_exon_variant 1.0
rrl 1474275 n.618T>G non_coding_transcript_exon_variant 1.0
rrl 1474287 n.631_649delCCTTTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>T non_coding_transcript_exon_variant 0.67
rrl 1474476 n.819C>T non_coding_transcript_exon_variant 0.83
rrl 1474488 n.831G>A non_coding_transcript_exon_variant 0.83
rrl 1474496 n.839C>T non_coding_transcript_exon_variant 0.83
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.83
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.86
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.86
rrl 1474516 n.859C>T non_coding_transcript_exon_variant 0.75
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.75
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.75
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.67
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.67
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.67
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.86
rrl 1474558 n.901G>A non_coding_transcript_exon_variant 0.86
rrl 1474582 n.925T>A non_coding_transcript_exon_variant 0.75
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.7
rrl 1474752 n.1096delA non_coding_transcript_exon_variant 0.89
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.89
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.89
rrl 1474780 n.1123C>T non_coding_transcript_exon_variant 0.89
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.89
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.88
rrl 1474798 n.1141C>T non_coding_transcript_exon_variant 0.88
rrl 1474799 n.1143delT non_coding_transcript_exon_variant 0.88
rrl 1474803 n.1146_1147insA non_coding_transcript_exon_variant 0.88
rrl 1474806 n.1149A>C non_coding_transcript_exon_variant 0.8
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.82
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.8
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.8
rrl 1474831 n.1174A>T non_coding_transcript_exon_variant 0.8
rrl 1474853 n.1196A>G non_coding_transcript_exon_variant 0.93
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 0.93
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.67
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.64
rrl 1474928 n.1271C>T non_coding_transcript_exon_variant 0.57
rrl 1475124 n.1467A>T non_coding_transcript_exon_variant 0.5
rrl 1475137 n.1480A>T non_coding_transcript_exon_variant 0.5
rrl 1475170 n.1513A>G non_coding_transcript_exon_variant 0.5
rrl 1475673 n.2016T>C non_coding_transcript_exon_variant 1.0
rrl 1475699 n.2042C>T non_coding_transcript_exon_variant 1.0
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 1.0
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.8
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.8
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.8
rrl 1475767 n.2110G>T non_coding_transcript_exon_variant 0.8
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.88
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.89
rrl 1475869 n.2212C>A non_coding_transcript_exon_variant 1.0
rrl 1475877 n.2220C>T non_coding_transcript_exon_variant 1.0
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 1.0
rrl 1475883 n.2226A>T non_coding_transcript_exon_variant 1.0
rrl 1475892 n.2235A>C non_coding_transcript_exon_variant 1.0
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 1.0
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 1.0
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 1.0
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 1.0
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 1.0
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 1.0
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 1.0
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 1.0
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 1.0
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475991 n.2334T>A non_coding_transcript_exon_variant 0.75
rrl 1475993 n.2336C>T non_coding_transcript_exon_variant 1.0
rrl 1475996 n.2339T>G non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476117 n.2460G>A non_coding_transcript_exon_variant 1.0
rrl 1476130 n.2473G>A non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476141 n.2484A>G non_coding_transcript_exon_variant 1.0
rrl 1476153 n.2496T>C non_coding_transcript_exon_variant 1.0
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.89
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476235 n.2578A>G non_coding_transcript_exon_variant 1.0
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 1.0
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>G non_coding_transcript_exon_variant 1.0
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.88
rrl 1476363 n.2706A>G non_coding_transcript_exon_variant 0.88
rrl 1476366 n.2709A>C non_coding_transcript_exon_variant 0.88
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.88
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.88
rrl 1476374 n.2717T>G non_coding_transcript_exon_variant 0.9
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.9
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 1.0
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 1.0
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 1.0
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.75
fabG1 1673215 c.-225G>T upstream_gene_variant 0.33
inhA 1674997 c.799delC frameshift_variant 0.29
rpsA 1833928 c.387G>C synonymous_variant 0.33
rpsA 1833952 c.411C>A synonymous_variant 0.56
rpsA 1833955 c.414G>T synonymous_variant 0.56
rpsA 1833958 c.417C>T synonymous_variant 0.56
rpsA 1833959 p.Leu140Val missense_variant 0.56
rpsA 1833970 c.429G>C synonymous_variant 0.79
rpsA 1833976 c.435C>T synonymous_variant 0.92
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833985 c.444G>T synonymous_variant 0.93
rpsA 1833994 c.453G>C synonymous_variant 0.93
rpsA 1833997 c.456G>T synonymous_variant 0.93
rpsA 1834000 c.459G>T synonymous_variant 0.94
rpsA 1834012 c.471G>A synonymous_variant 0.94
rpsA 1834015 c.474G>C synonymous_variant 0.94
rpsA 1834018 c.477C>T synonymous_variant 0.94
rpsA 1834024 c.483G>C synonymous_variant 0.95
rpsA 1834034 p.Ile165Val missense_variant 0.95
rpsA 1834039 c.498C>T synonymous_variant 0.94
rpsA 1834040 p.Lys167Gln missense_variant 0.94
rpsA 1834069 c.528G>C synonymous_variant 0.95
rpsA 1834090 c.549G>T synonymous_variant 0.94
rpsA 1834099 c.558C>G synonymous_variant 0.79
rpsA 1834105 c.564C>T synonymous_variant 0.75
rpsA 1834108 c.567C>G synonymous_variant 0.7
rpsA 1834114 c.573G>C synonymous_variant 0.57
rpsA 1834123 c.582C>T synonymous_variant 0.57
rpsA 1834129 c.588C>T synonymous_variant 0.57
rpsA 1834189 c.648G>C synonymous_variant 0.62
rpsA 1834210 c.669C>T synonymous_variant 0.7
rpsA 1834213 c.672G>C synonymous_variant 0.7
rpsA 1834216 c.675C>T synonymous_variant 0.7
rpsA 1834219 c.678C>T synonymous_variant 0.7
rpsA 1834222 c.681T>C synonymous_variant 0.58
rpsA 1834225 c.684C>G synonymous_variant 0.58
rpsA 1834240 c.699T>C synonymous_variant 0.5
rpsA 1834241 c.700_702delCTGinsTTA synonymous_variant 0.5
rpsA 1834246 c.705G>C synonymous_variant 0.5
rpsA 1834249 c.708T>C synonymous_variant 0.5
rpsA 1834261 c.720A>G synonymous_variant 0.54
rpsA 1834264 c.723G>C synonymous_variant 0.54
rpsA 1834273 c.732C>T synonymous_variant 0.54
rpsA 1834286 c.745_746delTCinsAG synonymous_variant 0.4
rpsA 1834294 c.753G>T synonymous_variant 0.4
rpsA 1834298 p.Gln253Glu missense_variant 0.4
rpsA 1834307 p.Asp256His missense_variant 0.4
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102269 c.774C>G synonymous_variant 0.29
katG 2154309 c.1803C>A synonymous_variant 0.5
PPE35 2167908 p.Gly902Val missense_variant 0.4
PPE35 2168728 p.Gly629Arg missense_variant 1.0
Rv1979c 2221903 p.Ala421Glu missense_variant 0.33
Rv1979c 2222045 p.Leu374Val missense_variant 0.22
Rv1979c 2222465 p.Gly234Ser missense_variant 0.4
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289101 c.141C>A synonymous_variant 0.33
pncA 2289947 c.-706T>A upstream_gene_variant 0.25
pncA 2290043 c.-802C>A upstream_gene_variant 0.4
eis 2714306 p.Thr343Pro missense_variant 0.4
eis 2715361 c.-29G>T upstream_gene_variant 1.0
ahpC 2726615 c.423C>T synonymous_variant 0.4
pepQ 2859528 c.891T>A synonymous_variant 0.33
Rv2752c 3064530 c.1662G>T synonymous_variant 0.33
Rv2752c 3064610 c.1582C>A synonymous_variant 0.67
Rv2752c 3067098 c.-907A>C upstream_gene_variant 0.33
thyX 3067953 c.-8T>A upstream_gene_variant 0.67
thyA 3074573 c.-102C>A upstream_gene_variant 0.22
ald 3086929 p.Ala37Glu missense_variant 0.33
ald 3087164 c.345T>A synonymous_variant 0.29
fbiD 3339606 c.489G>T synonymous_variant 0.5
fbiD 3339629 p.Arg171Leu missense_variant 0.5
Rv3083 3448362 c.-142A>G upstream_gene_variant 0.22
fprA 3474827 p.Ser274Tyr missense_variant 0.67
Rv3236c 3613292 c.-177delG upstream_gene_variant 0.67
fbiA 3640424 c.-119A>T upstream_gene_variant 0.67
fbiB 3641541 p.Gly3Ser missense_variant 0.33
fbiB 3642856 p.Ala441Asp missense_variant 0.5
rpoA 3877596 c.912G>A synonymous_variant 0.4
rpoA 3877830 p.Asn226Lys missense_variant 0.67
ddn 3987070 p.Ala76Val missense_variant 0.22
clpC1 4039996 p.Glu237* stop_gained 0.5
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243123 c.-110T>C upstream_gene_variant 0.33
embA 4244221 p.Leu330Pro missense_variant 0.33
embA 4244812 p.Cys527Phe missense_variant 1.0
embB 4248126 p.Ser538Leu missense_variant 0.29
embB 4248594 p.Gly694Val missense_variant 0.67
ethA 4326165 p.Gly437Cys missense_variant 0.4
ethA 4326741 p.Arg245Cys missense_variant 0.33
ethR 4326763 c.-786C>T upstream_gene_variant 0.25
ethA 4327014 p.Ser154Ala missense_variant 0.29
whiB6 4338595 c.-75delG upstream_gene_variant 1.0