Run ID: ERR2228890
Sample name:
Date: 31-03-2023 16:24:50
Number of reads: 153319
Percentage reads mapped: 17.42
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.96 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 1.0 | kanamycin, capreomycin, aminoglycosides, amikacin |
pncA | 2288756 | c.485delG | frameshift_variant | 0.25 | pyrazinamide |
ethA | 4326132 | c.1341delC | frameshift_variant | 0.5 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7608 | p.Trp103Arg | missense_variant | 0.29 |
gyrA | 9616 | p.Ser772Ile | missense_variant | 0.18 |
mshA | 575589 | p.Arg81His | missense_variant | 0.5 |
mshA | 576270 | p.Ser308Leu | missense_variant | 0.67 |
rpoB | 759638 | c.-169T>G | upstream_gene_variant | 0.67 |
rpoB | 762197 | c.2391C>T | synonymous_variant | 0.33 |
rpoB | 762209 | c.2403C>T | synonymous_variant | 0.33 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.33 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.4 |
rpoB | 762236 | c.2430G>T | synonymous_variant | 0.4 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.4 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.4 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.4 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.67 |
rpoB | 762531 | p.Ile909Phe | missense_variant | 0.5 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.62 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.62 |
rpoC | 762899 | c.-471G>T | upstream_gene_variant | 0.67 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.62 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.68 |
rpoC | 762959 | c.-411G>T | upstream_gene_variant | 0.75 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.67 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.47 |
rpoC | 762989 | c.-381G>A | upstream_gene_variant | 0.5 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.4 |
rpoB | 763002 | c.3197dupA | frameshift_variant | 0.4 |
rpoB | 763006 | c.3201delC | frameshift_variant | 0.4 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.3 |
rpoC | 763025 | c.-345C>T | upstream_gene_variant | 0.22 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.14 |
rpoC | 763097 | c.-273C>T | upstream_gene_variant | 0.15 |
rpoB | 763098 | p.Glu1098* | stop_gained | 0.15 |
rpoB | 763162 | p.Leu1119His | missense_variant | 0.2 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.69 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.7 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.71 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.8 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.83 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.83 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.79 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.89 |
rpoC | 763627 | p.Lys86Asn | missense_variant | 0.88 |
rpoC | 763642 | c.273G>T | synonymous_variant | 0.75 |
rpoC | 763648 | c.279C>A | synonymous_variant | 0.5 |
rpoC | 763661 | p.Ala98Ser | missense_variant | 0.67 |
rpoC | 764612 | p.Gln415Lys | missense_variant | 0.5 |
rpoC | 766834 | p.Glu1155Asp | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776386 | p.Pro699Ser | missense_variant | 0.25 |
mmpL5 | 777738 | p.Ala248Asp | missense_variant | 0.33 |
mmpL5 | 778084 | p.Pro133Ser | missense_variant | 0.15 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.75 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.75 |
rpsL | 781679 | c.120C>G | synonymous_variant | 0.56 |
rpsL | 781682 | c.123T>G | synonymous_variant | 0.56 |
rpsL | 781706 | c.147T>G | synonymous_variant | 0.38 |
rpsL | 781709 | c.150G>A | synonymous_variant | 0.38 |
rpsL | 781843 | p.Tyr95Phe | missense_variant | 0.22 |
rplC | 800717 | c.-92C>T | upstream_gene_variant | 0.5 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1305380 | p.Ser817Leu | missense_variant | 0.33 |
embR | 1416642 | p.Ala236Ser | missense_variant | 0.5 |
embR | 1417530 | c.-183T>A | upstream_gene_variant | 0.33 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472085 | n.240C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472107 | n.262A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472368 | n.523A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472396 | n.551A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472507 | n.662C>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472522 | n.677T>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472571 | n.726G>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472812 | n.967A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472954 | n.1110delC | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472958 | n.1113_1114insC | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472986 | n.1141_1142insA | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472989 | n.1145delA | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473091 | n.1246G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473094 | n.1249T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473099 | n.1254T>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473100 | n.1255G>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473102 | n.1257C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473120 | n.1275C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473122 | n.1277T>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473123 | n.1278A>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.87 |
rrs | 1473226 | n.1381C>G | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473288 | n.1443C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473294 | n.1449A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474186 | n.529A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474202 | n.545T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474264 | n.607T>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474266 | n.609T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474269 | n.612C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474271 | n.614A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474287 | n.631_649delCCTTTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474467 | n.810A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474488 | n.831G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474496 | n.839C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474516 | n.859C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1474582 | n.925T>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.89 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474799 | n.1143delT | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474803 | n.1146_1147insA | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474806 | n.1149A>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.82 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474853 | n.1196A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1474928 | n.1271C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475137 | n.1480A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475170 | n.1513A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475722 | n.2065G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475747 | n.2090A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475767 | n.2110G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1475781 | n.2124T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475978 | n.2321C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475991 | n.2334T>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475993 | n.2336C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475996 | n.2339T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476117 | n.2460G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.75 |
fabG1 | 1673215 | c.-225G>T | upstream_gene_variant | 0.33 |
inhA | 1674997 | c.799delC | frameshift_variant | 0.29 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.33 |
rpsA | 1833952 | c.411C>A | synonymous_variant | 0.56 |
rpsA | 1833955 | c.414G>T | synonymous_variant | 0.56 |
rpsA | 1833958 | c.417C>T | synonymous_variant | 0.56 |
rpsA | 1833959 | p.Leu140Val | missense_variant | 0.56 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.79 |
rpsA | 1833976 | c.435C>T | synonymous_variant | 0.92 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 |
rpsA | 1833985 | c.444G>T | synonymous_variant | 0.93 |
rpsA | 1833994 | c.453G>C | synonymous_variant | 0.93 |
rpsA | 1833997 | c.456G>T | synonymous_variant | 0.93 |
rpsA | 1834000 | c.459G>T | synonymous_variant | 0.94 |
rpsA | 1834012 | c.471G>A | synonymous_variant | 0.94 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.94 |
rpsA | 1834018 | c.477C>T | synonymous_variant | 0.94 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.95 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 0.95 |
rpsA | 1834039 | c.498C>T | synonymous_variant | 0.94 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.94 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.95 |
rpsA | 1834090 | c.549G>T | synonymous_variant | 0.94 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.79 |
rpsA | 1834105 | c.564C>T | synonymous_variant | 0.75 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.7 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.57 |
rpsA | 1834123 | c.582C>T | synonymous_variant | 0.57 |
rpsA | 1834129 | c.588C>T | synonymous_variant | 0.57 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.62 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.7 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.7 |
rpsA | 1834216 | c.675C>T | synonymous_variant | 0.7 |
rpsA | 1834219 | c.678C>T | synonymous_variant | 0.7 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.58 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.58 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.5 |
rpsA | 1834241 | c.700_702delCTGinsTTA | synonymous_variant | 0.5 |
rpsA | 1834246 | c.705G>C | synonymous_variant | 0.5 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.5 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.54 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.54 |
rpsA | 1834273 | c.732C>T | synonymous_variant | 0.54 |
rpsA | 1834286 | c.745_746delTCinsAG | synonymous_variant | 0.4 |
rpsA | 1834294 | c.753G>T | synonymous_variant | 0.4 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 0.4 |
rpsA | 1834307 | p.Asp256His | missense_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102269 | c.774C>G | synonymous_variant | 0.29 |
katG | 2154309 | c.1803C>A | synonymous_variant | 0.5 |
PPE35 | 2167908 | p.Gly902Val | missense_variant | 0.4 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
Rv1979c | 2221903 | p.Ala421Glu | missense_variant | 0.33 |
Rv1979c | 2222045 | p.Leu374Val | missense_variant | 0.22 |
Rv1979c | 2222465 | p.Gly234Ser | missense_variant | 0.4 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289101 | c.141C>A | synonymous_variant | 0.33 |
pncA | 2289947 | c.-706T>A | upstream_gene_variant | 0.25 |
pncA | 2290043 | c.-802C>A | upstream_gene_variant | 0.4 |
eis | 2714306 | p.Thr343Pro | missense_variant | 0.4 |
eis | 2715361 | c.-29G>T | upstream_gene_variant | 1.0 |
ahpC | 2726615 | c.423C>T | synonymous_variant | 0.4 |
pepQ | 2859528 | c.891T>A | synonymous_variant | 0.33 |
Rv2752c | 3064530 | c.1662G>T | synonymous_variant | 0.33 |
Rv2752c | 3064610 | c.1582C>A | synonymous_variant | 0.67 |
Rv2752c | 3067098 | c.-907A>C | upstream_gene_variant | 0.33 |
thyX | 3067953 | c.-8T>A | upstream_gene_variant | 0.67 |
thyA | 3074573 | c.-102C>A | upstream_gene_variant | 0.22 |
ald | 3086929 | p.Ala37Glu | missense_variant | 0.33 |
ald | 3087164 | c.345T>A | synonymous_variant | 0.29 |
fbiD | 3339606 | c.489G>T | synonymous_variant | 0.5 |
fbiD | 3339629 | p.Arg171Leu | missense_variant | 0.5 |
Rv3083 | 3448362 | c.-142A>G | upstream_gene_variant | 0.22 |
fprA | 3474827 | p.Ser274Tyr | missense_variant | 0.67 |
Rv3236c | 3613292 | c.-177delG | upstream_gene_variant | 0.67 |
fbiA | 3640424 | c.-119A>T | upstream_gene_variant | 0.67 |
fbiB | 3641541 | p.Gly3Ser | missense_variant | 0.33 |
fbiB | 3642856 | p.Ala441Asp | missense_variant | 0.5 |
rpoA | 3877596 | c.912G>A | synonymous_variant | 0.4 |
rpoA | 3877830 | p.Asn226Lys | missense_variant | 0.67 |
ddn | 3987070 | p.Ala76Val | missense_variant | 0.22 |
clpC1 | 4039996 | p.Glu237* | stop_gained | 0.5 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243123 | c.-110T>C | upstream_gene_variant | 0.33 |
embA | 4244221 | p.Leu330Pro | missense_variant | 0.33 |
embA | 4244812 | p.Cys527Phe | missense_variant | 1.0 |
embB | 4248126 | p.Ser538Leu | missense_variant | 0.29 |
embB | 4248594 | p.Gly694Val | missense_variant | 0.67 |
ethA | 4326165 | p.Gly437Cys | missense_variant | 0.4 |
ethA | 4326741 | p.Arg245Cys | missense_variant | 0.33 |
ethR | 4326763 | c.-786C>T | upstream_gene_variant | 0.25 |
ethA | 4327014 | p.Ser154Ala | missense_variant | 0.29 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |