EBG00000313325 - n.1319C>T
Drug resistance types
27 Sensitive
38 RR-TB
2 HR-TB
19 MDR-TB
14 Pre-XDR-TB
1 XDR-TB
91 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 29 |
| lineage2.2.1 | 27 |
| lineage4.8 | 57 |
| lineage4.7 | 2 |
| lineage6.1.2 | 1 |
| La1.8.1 | 9 |
| lineage4.1.1.3 | 6 |
| lineage4.3.3 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage1.1.2 | 3 |
| lineage3 | 5 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.4.1.2 | 1 |
| lineage4.4.2 | 4 |
| lineage6.2.3 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.3.4.1 | 4 |
| lineage4.2.1 | 7 |
| lineage4.4 | 1 |
| La1.7.1 | 3 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage6.2.3 | 1 |
| lineage3.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.3;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| La1.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2.2 | 1 |
| lineage1.1.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12006067 | Sensitive | lineage4.9 | None | ERR10796559 | Other | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | ERR2229540 | Sensitive | lineage4.8 | None | ERR5087596 | Other | La1.8.1 | None | SRR6824680 | RR-TB | lineage2.2.1 | cn | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR2228890 | Other | lineage4.8;lineage4.9 | None | ERR2229204 | Other | lineage4.8 | None | ERR4796351 | Sensitive | lineage4.9 | None | ERR978760 | RR-TB | lineage4.8 | None | SRR1792024 | Other | La1.8.1 | None | ERR2229541 | Other | lineage4.8 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR2228899 | Other | lineage4.8 | None | SRR14801720 | Other | lineage4.8 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR978735 | Other | lineage4.8 | None | ERR2228965 | Other | lineage4.8 | None | SRR12006070 | Sensitive | lineage4.9 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR1196478 | Other | lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | SRR1792012 | Other | La1.8.1 | None | ERR7902623 | Sensitive | lineage1.1.2 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR2228810 | Other | lineage4.8;lineage4.9 | None | ERR978727 | Other | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6824298 | Sensitive | lineage4.4.2 | cn | ERR10796630 | Other | lineage6.2.3 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1792025 | Other | La1.8.1 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR2229436 | Other | lineage4.8 | None | ERR978726 | RR-TB | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | DRR184982 | Other | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173421 | Other | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | ERR2228838 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR13423637 | Other | lineage2.2.1 | None | SRR6152980 | HR-TB | lineage4.8 | ca | ERR5087846 | Other | La1.8.1 | None | ERR978693 | Other | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | ERR4800297 | Other | lineage4.1.1.3 | in | SRR12006091 | Sensitive | lineage4.9 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR1750907 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR12006056 | Sensitive | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR1175473 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1173185 | Other | lineage4.9 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR1173450 | Other | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR13423634 | Other | lineage2.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR978754 | RR-TB | lineage4.8 | None | SRR1173833 | Other | lineage4.9 | None | ERR3324368 | RR-TB | lineage1.1.2;lineage6.2.3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR12420587 | MDR-TB | lineage2.2.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR12006082 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR16156804 | Sensitive | lineage4.9 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | ERR4817915 | Other | lineage4.9 | None | SRR12006090 | Sensitive | lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | ERR4809346 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR10762495 | MDR-TB | lineage2.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR7645928 | Other | lineage4.7 | None | SRR15368951 | Other | lineage2.2.1 | None | SRR12006095 | Sensitive | lineage4.9 | None | SRR6824683 | MDR-TB | lineage4.4.2 | cn | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | ERR019855 | Other | lineage3 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817204 | Other | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR5065285 | Sensitive | lineage1.1.1 | vn | ERR978752 | Other | lineage4.8 | None | ERR4769423 | Other | La1.3 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828879 | HR-TB | lineage3 | None | ERR978748 | Other | lineage4.8 | None | ERR3439265 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR911930 | Other | lineage4.8 | None | SRR7236134 | Other | La1.8.1 | None | ERR2228815 | Other | lineage4.8 | None | ERR4815816 | Other | lineage4.5 | gb | SRR6397815 | Other | lineage4.4.1.1 | None | ERR234165 | Sensitive | lineage1.1.2 | tz | ERR978747 | Other | lineage4.8 | None | ERR2228900 | Other | lineage4.8 | None | SRR12006075 | Sensitive | lineage4.9 | None | ERR911929 | Other | lineage4.8 | None | SRR1184329 | Other | lineage4.9 | None | ERR978746 | RR-TB | lineage4.8 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR2229811 | Other | lineage4.8 | dk | SRR1792011 | Other | La1.8.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR6824678 | RR-TB | lineage4.2.2 | cn | ERR017781 | Other | lineage3 | None | ERR028348 | Sensitive | lineage1.1.2 | None | ERR038289 | Other | lineage4.3.3 | None | ERR978694 | Other | lineage4.8 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR1175474 | Other | lineage4.9 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR3283046 | Sensitive | lineage4.9 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR978733 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR12006068 | Sensitive | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR978756 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR171135 | Other | lineage2.2.1 | za |
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