EBG00000313325 - n.1319C>T
Drug resistance types
29 Sensitive
34 RR-TB
11 HR-TB
30 MDR-TB
17 Pre-XDR-TB
1 XDR-TB
84 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 33 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1 | 29 |
| lineage3.1.1 | 1 |
| lineage4.4.2 | 4 |
| lineage4.3.4.1 | 2 |
| lineage4.8 | 33 |
| lineage4.4 | 1 |
| La1.8.1 | 12 |
| lineage4.6.2.2 | 1 |
| La1.7.1 | 3 |
| lineage4.3.3 | 6 |
| lineage4.1.2.1 | 9 |
| lineage4.4.1.1 | 3 |
| lineage2.2 | 2 |
| lineage4.9.1 | 1 |
| lineage4.3.2.1 | 1 |
| 4 | |
| lineage4.4.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4 | 7 |
| lineage4.1.1.3 | 7 |
| lineage4.5 | 1 |
| lineage1.1.2 | 3 |
| lineage6.3.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.1.1.3.1;lineage3.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage4.6.2 | 1 |
| lineage3 | 7 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.2.2 | 1 |
| lineage4.7 | 2 |
| lineage4.2.1 | 7 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| La1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage6 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.8;lineage4.3.3 | 4 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 206 |
Geographic prevalence
Country level data for this variant is available for 25 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972206 | HR-TB | lineage1.1.3.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972369 | Pre-XDR-TB | lineage2.2.1 | None | SRR12006056 | Sensitive | lineage4.9 | None | SRR12006090 | Sensitive | lineage4.9 | None | SRR12006091 | Sensitive | lineage4.9 | None | SRR12006067 | Sensitive | lineage4.9 | None | SRR12006095 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR12006068 | Sensitive | lineage4.9 | None | SRR12006070 | Sensitive | lineage4.9 | None | SRR12006082 | Sensitive | lineage4.9 | None | SRR12006075 | Sensitive | lineage4.9 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR13423634 | Other | lineage2.2.1 | None | SRR13423637 | Other | lineage2.2.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR14801720 | RR-TB | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR15368951 | Other | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1792012 | Other | La1.8.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR1792024 | Other | La1.8.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002900 | Pre-XDR-TB | lineage2.2.1 | None | SRR1792025 | Other | La1.8.1 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR21469201 | Other | La1.7.1 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | SRR21469202 | Other | La1.7.1 | None | SRR21469200 | Other | La1.7.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR2228965 | Other | lineage4.8 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815257 | HR-TB | lineage4.4.1.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR1750894 | Sensitive | lineage4.9.1 | zw | ERR1750926 | Other | lineage4.3.2.1 | za | ERR2229810 | Other | lineage4.8 | None | ERR2229541 | Other | lineage4.8 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR171135 | Other | lineage2.2.1 | za | ERR1750873 | Sensitive | lineage4.8 | bw | ERR1750905 | Sensitive | lineage4.3.3 | za | ERR1750907 | RR-TB | None | ERR4815488 | HR-TB | lineage4.4.1 | None | ERR1750938 | Other | lineage4.4.1 | None | ERR2229540 | Other | lineage4.8 | None | ERR2229198 | MDR-TB | lineage4.8 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR2229733 | Other | lineage4.8 | dk | ERR2229147 | Other | lineage4.8 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR2229204 | Other | lineage4.8 | None | ERR2229811 | Other | lineage4.8 | dk | ERR2229801 | Other | lineage4 | None | ERR2229435 | HR-TB | lineage4.8 | None | ERR2229366 | Other | lineage4.8 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR2229436 | Other | lineage4.8 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR2228813 | Other | lineage4.8 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228910 | Other | lineage4.8 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR234165 | Sensitive | lineage1.1.2 | tz | ERR2512423 | Other | lineage4.1.1.3 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818440 | Other | lineage6.3.1 | None | SRR5065285 | Sensitive | lineage1.1.1 | vn | ERR2514073 | Other | lineage4.1.1.3.1 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR2514679 | HR-TB | lineage2.2.1 | gb | ERR4819695 | Sensitive | lineage4.1.1.3 | gb | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR4819815 | Sensitive | lineage4.9 | None | ERR4820829 | Other | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4820580 | Sensitive | lineage4.9;lineage4.6.2 | None | ERR4820185 | Sensitive | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821054 | Other | lineage3 | None | ERR4821276 | Other | lineage3 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045002 | MDR-TB | lineage4.9 | None | ERR4821332 | Other | lineage4.1.2.1 | gb | ERR4822058 | Sensitive | lineage4.1.2.1 | gb | ERR4822157 | Sensitive | lineage4;lineage2.2.1 | gb | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR4829336 | Other | lineage4 | None | ERR4828879 | MDR-TB | lineage3 | None | ERR4828965 | MDR-TB | lineage4.3.3 | it | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6797613 | Other | lineage4.3.4.2 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6824298 | Sensitive | lineage4.4.2 | cn | SRR6964650 | Sensitive | lineage3 | None | ERR5087500 | Other | La1.8.1 | None | SRR6824501 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824678 | RR-TB | lineage4.2.2 | cn | SRR6824680 | RR-TB | lineage2.2.1 | cn | SRR6824683 | MDR-TB | lineage4.4.2 | cn | ERR5087846 | Other | La1.8.1 | None | ERR5087486 | Other | La1.8.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR7131096 | Other | lineage4.8 | None | ERR5087596 | Other | La1.8.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645929 | MDR-TB | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755652 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | SRR7755655 | Other | lineage4.1.2.1 | None | DRR034348 | Other | lineage2.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR017781 | Other | lineage3 | None | ERR019855 | Other | lineage3 | None | ERR10796594 | Other | lineage4.9 | None | ERR028348 | Sensitive | lineage1.1.2 | None | ERR036198 | Other | lineage4.3.4.2 | None | ERR036207 | Other | lineage4.9 | None | ERR038289 | Other | lineage4.3.3 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796559 | Other | lineage4.9 | None | ERR10796630 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439265 | Other | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR4769423 | Other | La1.3 | None | ERR4025018 | Other | lineage4.1.2.1 | None | ERR4188403 | Other | La1.8.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4812328 | Other | lineage4.3.3 | pe | ERR4800197 | HR-TB | None | ERR4809346 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5864651 | MDR-TB | lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR7902623 | Sensitive | lineage1.1.2 | None | ERR6865587 | Other | lineage4.1.2.1 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | ERR9787033 | Sensitive | lineage6 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR10214505 | Sensitive | lineage1.2.1.2 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None |
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