Run ID: ERR1750907
Sample name:
Date: 31-03-2023 14:59:24
Number of reads: 668712
Percentage reads mapped: 62.82
Strain:
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761127 | p.Ser441Ala | missense_variant | 0.29 | rifampicin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.86 | kanamycin, capreomycin, aminoglycosides, amikacin |
tlyA | 1918494 | c.556delG | frameshift_variant | 0.4 | capreomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5405 | p.Glu56* | stop_gained | 0.67 |
gyrB | 5487 | p.Gly83Val | missense_variant | 0.67 |
gyrA | 6922 | c.-380G>T | upstream_gene_variant | 0.5 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9794 | p.Asn831Lys | missense_variant | 1.0 |
fgd1 | 490686 | c.-97G>A | upstream_gene_variant | 0.15 |
mshA | 575414 | p.Gly23Cys | missense_variant | 0.15 |
mshA | 575433 | p.Gly29Asp | missense_variant | 0.17 |
mshA | 575952 | p.Gly202Glu | missense_variant | 0.18 |
ccsA | 620699 | p.Val270Asp | missense_variant | 0.25 |
ccsA | 620712 | c.822G>A | synonymous_variant | 0.2 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.67 |
rpoB | 760827 | p.Arg341Cys | missense_variant | 1.0 |
rpoB | 760903 | p.His366Leu | missense_variant | 0.67 |
rpoB | 760962 | p.Gly386Cys | missense_variant | 0.67 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.5 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.67 |
rpoB | 760997 | c.1191G>C | synonymous_variant | 0.6 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.4 |
rpoB | 761013 | p.Val403Ile | missense_variant | 0.4 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.5 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.75 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.75 |
rpoB | 761046 | p.Ile414Val | missense_variant | 0.5 |
rpoB | 761051 | c.1245G>C | synonymous_variant | 0.67 |
rpoB | 761054 | c.1248G>C | synonymous_variant | 0.75 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.75 |
rpoB | 761087 | c.1281C>A | synonymous_variant | 0.33 |
rpoB | 761088 | c.1282_1284delAGCinsTCG | synonymous_variant | 0.33 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.5 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.38 |
rpoB | 761120 | c.1314C>T | synonymous_variant | 0.25 |
rpoB | 761126 | c.1320G>C | synonymous_variant | 0.25 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.29 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.29 |
rpoB | 761149 | p.Arg448Leu | missense_variant | 0.29 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.29 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.25 |
rpoB | 761174 | c.1368T>C | synonymous_variant | 0.25 |
rpoB | 761239 | p.Cys478Phe | missense_variant | 0.25 |
rpoB | 761251 | p.Thr482Asn | missense_variant | 0.33 |
rpoB | 761933 | c.2127G>C | synonymous_variant | 0.4 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.67 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.67 |
rpoB | 761972 | c.2166C>T | synonymous_variant | 1.0 |
rpoB | 762000 | c.2194_2195delTCinsAG | synonymous_variant | 0.67 |
rpoB | 762003 | p.Asn733Gln | missense_variant | 0.67 |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.67 |
rpoB | 762011 | c.2205G>C | synonymous_variant | 0.67 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.67 |
rpoB | 762062 | c.2256T>C | synonymous_variant | 0.6 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.6 |
rpoB | 762080 | c.2274G>C | synonymous_variant | 0.6 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.6 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.33 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.33 |
rpoB | 762137 | c.2331C>T | synonymous_variant | 0.25 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.25 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.25 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.25 |
rpoB | 762161 | c.2355C>T | synonymous_variant | 0.25 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.25 |
rpoB | 762184 | p.Gly793Val | missense_variant | 0.29 |
rpoB | 762218 | c.2412T>C | synonymous_variant | 0.25 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.25 |
rpoB | 762239 | c.2433G>A | synonymous_variant | 0.25 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.25 |
rpoB | 762433 | p.Gly876Asp | missense_variant | 0.67 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.67 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.4 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.5 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.5 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.75 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.5 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 1.0 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 1.0 |
rpoC | 763058 | c.-312C>G | upstream_gene_variant | 1.0 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 1.0 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 1.0 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 1.0 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.5 |
rpoC | 763660 | c.291T>C | synonymous_variant | 0.5 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.29 |
rpoC | 763708 | c.339G>C | synonymous_variant | 0.33 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.29 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.29 |
rpoC | 763727 | p.Leu120Met | missense_variant | 0.29 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.29 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.29 |
rpoC | 764353 | c.984G>C | synonymous_variant | 0.33 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.33 |
rpoC | 764371 | c.1002G>C | synonymous_variant | 0.33 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.5 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.5 |
rpoC | 764405 | c.1036_1038delAGGinsCGC | synonymous_variant | 0.6 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.4 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.4 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.6 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.5 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.6 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.33 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.5 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.43 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.57 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.25 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.6 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.5 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.6 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.2 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.55 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.33 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.44 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.18 |
rpoC | 764548 | c.1179G>T | synonymous_variant | 0.5 |
rpoC | 764549 | p.Pro394Thr | missense_variant | 0.36 |
rpoC | 764560 | c.1191T>G | synonymous_variant | 0.2 |
rpoC | 764561 | p.Pro398Ala | missense_variant | 0.36 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.2 |
rpoC | 764572 | c.1203G>C | synonymous_variant | 0.2 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.38 |
rpoC | 764576 | c.1207_1208delTCinsAG | synonymous_variant | 0.25 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.38 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.38 |
rpoC | 764593 | c.1224C>A | synonymous_variant | 0.25 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.25 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.22 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.33 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.33 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.33 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.22 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.25 |
rpoC | 764662 | c.1293G>C | synonymous_variant | 0.25 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.38 |
rpoC | 764692 | c.1323C>T | synonymous_variant | 0.22 |
rpoC | 764705 | p.Leu446Ala | missense_variant | 0.22 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.33 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.75 |
rpoC | 765252 | p.Ser628Asn | missense_variant | 0.22 |
rpoC | 765291 | p.Arg641Leu | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776979 | c.1500_1501delGA | frameshift_variant | 1.0 |
mmpL5 | 777008 | c.1473G>T | synonymous_variant | 1.0 |
mmpL5 | 778380 | p.Pro34Gln | missense_variant | 0.5 |
rplC | 801133 | p.Gly109Cys | missense_variant | 0.29 |
rplC | 801206 | p.Arg133His | missense_variant | 0.2 |
fbiC | 1303911 | c.981G>A | synonymous_variant | 1.0 |
fbiC | 1303965 | c.1035G>A | synonymous_variant | 1.0 |
fbiC | 1304165 | p.Gly412Glu | missense_variant | 0.25 |
embR | 1416902 | p.Val149Glu | missense_variant | 0.4 |
embR | 1416932 | p.Ser139* | stop_gained | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472507 | n.662C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472694 | n.849C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472836 | n.991G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472840 | n.995A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472841 | n.996G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472873 | n.1028C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472874 | n.1029C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472875 | n.1030T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472880 | n.1035G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472958 | n.1113A>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472960 | n.1115G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472986 | n.1141C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472988 | n.1143T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472993 | n.1148G>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473714 | n.57C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474723 | n.1066G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474869 | n.1212G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475649 | n.1992A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475655 | n.1998T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1475756 | n.2101_2108delACCCGCAA | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475963 | n.2306G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475997 | n.2340A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475998 | n.2341C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476001 | n.2344T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476029 | n.2373_2377delACCTC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476045 | n.2388G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476046 | n.2389G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476047 | n.2390G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476088 | n.2431A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476105 | n.2450delA | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476167 | n.2510T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476256 | n.2599A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476300 | n.2643G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.67 |
fabG1 | 1673271 | c.-169G>T | upstream_gene_variant | 0.67 |
inhA | 1674391 | p.Asp64Asn | missense_variant | 0.18 |
inhA | 1674406 | p.Glu69Lys | missense_variant | 0.18 |
inhA | 1674415 | p.Ala72Thr | missense_variant | 0.18 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 1.0 |
rpsA | 1833808 | c.267G>C | synonymous_variant | 1.0 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 1.0 |
rpsA | 1833815 | p.Thr92Gln | missense_variant | 1.0 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.5 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.75 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.67 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.75 |
rpsA | 1833859 | c.318C>G | synonymous_variant | 0.67 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.4 |
rpsA | 1833884 | p.Thr115Asp | missense_variant | 0.33 |
rpsA | 1833887 | p.Ile116Val | missense_variant | 0.33 |
rpsA | 1833893 | p.Ala118Lys | missense_variant | 0.33 |
rpsA | 1833896 | p.Leu119Ile | missense_variant | 0.33 |
rpsA | 1833907 | p.Lys122Asn | missense_variant | 0.33 |
rpsA | 1833912 | p.Glu124Gly | missense_variant | 0.33 |
rpsA | 1833915 | p.Ala125Val | missense_variant | 0.33 |
rpsA | 1833921 | p.Lys127Thr | missense_variant | 0.29 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.57 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.2 |
rpsA | 1833961 | c.420C>G | synonymous_variant | 0.25 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.25 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.22 |
rpsA | 1833985 | c.444G>C | synonymous_variant | 0.22 |
rpsA | 1833988 | c.447C>G | synonymous_variant | 0.22 |
rpsA | 1833991 | c.450C>A | synonymous_variant | 0.22 |
rpsA | 1833997 | c.456G>C | synonymous_variant | 0.22 |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.27 |
rpsA | 1834012 | c.471G>C | synonymous_variant | 0.25 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.25 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.25 |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.25 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.38 |
rpsA | 1834093 | c.552G>C | synonymous_variant | 0.4 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.4 |
rpsA | 1834105 | c.564C>T | synonymous_variant | 0.4 |
rpsA | 1834108 | c.567C>A | synonymous_variant | 0.4 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.4 |
rpsA | 1834294 | c.753G>C | synonymous_variant | 1.0 |
rpsA | 1834298 | p.Gln253Glu | missense_variant | 1.0 |
rpsA | 1834303 | c.762T>C | synonymous_variant | 1.0 |
rpsA | 1834327 | c.786G>C | synonymous_variant | 1.0 |
rpsA | 1834340 | p.Met267Leu | missense_variant | 1.0 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 1.0 |
rpsA | 1834357 | c.816T>G | synonymous_variant | 1.0 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 1.0 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 1.0 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.5 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.4 |
rpsA | 1834483 | p.Glu314Asp | missense_variant | 0.5 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.5 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.5 |
rpsA | 1834504 | c.963G>C | synonymous_variant | 0.4 |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 0.4 |
rpsA | 1834606 | c.1065C>T | synonymous_variant | 0.33 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.33 |
rpsA | 1834619 | c.1078T>C | synonymous_variant | 0.33 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.33 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.33 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.33 |
rpsA | 1834667 | p.Ala376Ser | missense_variant | 0.4 |
rpsA | 1834690 | c.1149T>C | synonymous_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918635 | c.696C>A | synonymous_variant | 0.33 |
ndh | 2102240 | p.Arg268His | missense_variant | 0.5 |
ndh | 2102595 | p.Arg150Ser | missense_variant | 0.25 |
ndh | 2102625 | p.Ser140Pro | missense_variant | 0.29 |
katG | 2154410 | p.Thr568Ala | missense_variant | 0.5 |
katG | 2154822 | c.1290G>T | synonymous_variant | 0.67 |
katG | 2155028 | p.Gly362Cys | missense_variant | 0.4 |
PPE35 | 2167653 | p.Pro987Leu | missense_variant | 0.29 |
PPE35 | 2167859 | c.2754T>G | synonymous_variant | 0.5 |
PPE35 | 2168603 | c.2010C>G | synonymous_variant | 0.25 |
PPE35 | 2168702 | c.1911T>A | synonymous_variant | 0.4 |
PPE35 | 2168746 | p.Gly623Ser | missense_variant | 0.29 |
PPE35 | 2168920 | p.Val565Ile | missense_variant | 0.33 |
PPE35 | 2169398 | c.1215C>T | synonymous_variant | 0.22 |
PPE35 | 2170174 | p.Asp147Tyr | missense_variant | 0.18 |
PPE35 | 2170182 | p.Trp144Leu | missense_variant | 0.22 |
Rv1979c | 2222754 | c.411G>A | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289283 | c.-42A>T | upstream_gene_variant | 0.4 |
pncA | 2289381 | c.-140C>A | upstream_gene_variant | 0.67 |
kasA | 2518894 | p.Lys260Asn | missense_variant | 0.4 |
kasA | 2519158 | c.1044C>A | synonymous_variant | 0.25 |
eis | 2714569 | p.Ala255Gly | missense_variant | 0.33 |
ahpC | 2726264 | c.72C>A | synonymous_variant | 0.29 |
folC | 2746581 | p.Glu340Lys | missense_variant | 0.33 |
folC | 2747431 | c.168G>T | synonymous_variant | 0.33 |
pepQ | 2859762 | c.657G>A | synonymous_variant | 0.67 |
pepQ | 2859863 | p.Asp186Asn | missense_variant | 0.33 |
pepQ | 2859879 | p.Met180Ile | missense_variant | 0.33 |
pepQ | 2860090 | p.Leu110* | stop_gained | 0.33 |
Rv2752c | 3065767 | c.424delG | frameshift_variant | 0.67 |
thyX | 3067618 | p.Pro110Ser | missense_variant | 0.4 |
thyX | 3067628 | p.Gln106Pro | missense_variant | 0.4 |
thyX | 3067631 | c.315C>T | synonymous_variant | 0.4 |
thyX | 3067875 | p.Pro24His | missense_variant | 0.18 |
thyX | 3067882 | p.Asp22Tyr | missense_variant | 0.17 |
thyA | 3074273 | p.Ser67Thr | missense_variant | 0.4 |
thyA | 3074374 | p.Gln33Leu | missense_variant | 0.33 |
thyA | 3074564 | c.-93G>T | upstream_gene_variant | 0.18 |
thyA | 3074654 | c.-183T>G | upstream_gene_variant | 0.29 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087078 | p.His87Asn | missense_variant | 0.4 |
ald | 3087489 | p.Glu224Lys | missense_variant | 1.0 |
ald | 3087846 | p.Leu343Phe | missense_variant | 0.67 |
fbiD | 3339226 | p.Asn37Tyr | missense_variant | 0.25 |
Rv3083 | 3449721 | c.1218G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474899 | p.Gly298Val | missense_variant | 0.4 |
fprA | 3475017 | p.Gln337His | missense_variant | 0.4 |
whiB7 | 3568777 | c.-98C>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612062 | p.Ala352Phe | missense_variant | 0.25 |
Rv3236c | 3612067 | c.1050G>T | synonymous_variant | 0.25 |
Rv3236c | 3613031 | p.Ala29Val | missense_variant | 0.18 |
Rv3236c | 3613054 | c.63G>C | synonymous_variant | 0.18 |
Rv3236c | 3613179 | c.-63T>C | upstream_gene_variant | 0.33 |
fbiB | 3641692 | p.Val53Glu | missense_variant | 0.22 |
fbiB | 3641718 | p.Pro62Thr | missense_variant | 0.5 |
fbiB | 3641867 | c.333C>A | synonymous_variant | 0.29 |
fbiB | 3642324 | p.Arg264Ser | missense_variant | 0.22 |
fbiB | 3642334 | p.Ser267Asn | missense_variant | 0.25 |
fbiB | 3642852 | p.Pro440Ser | missense_variant | 0.22 |
alr | 3840820 | p.Asp201Asn | missense_variant | 1.0 |
alr | 3841102 | p.Ala107Thr | missense_variant | 0.2 |
alr | 3841112 | p.Asp103Glu | missense_variant | 0.2 |
alr | 3841191 | p.Val77Asp | missense_variant | 0.29 |
ddn | 3986942 | c.99C>T | synonymous_variant | 0.4 |
ddn | 3986996 | c.153C>A | synonymous_variant | 0.25 |
clpC1 | 4038295 | p.Val804Leu | missense_variant | 0.67 |
clpC1 | 4038297 | p.Asp803Val | missense_variant | 0.67 |
clpC1 | 4038331 | p.Glu792* | stop_gained | 0.67 |
clpC1 | 4038860 | c.1845G>C | synonymous_variant | 0.22 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.29 |
clpC1 | 4038890 | c.1815G>A | synonymous_variant | 0.38 |
clpC1 | 4038911 | c.1794G>T | synonymous_variant | 0.6 |
clpC1 | 4038917 | c.1788C>T | synonymous_variant | 0.6 |
clpC1 | 4038923 | c.1782A>G | synonymous_variant | 0.6 |
clpC1 | 4038926 | c.1779G>T | synonymous_variant | 0.6 |
clpC1 | 4038941 | c.1764G>C | synonymous_variant | 0.6 |
clpC1 | 4038944 | c.1761C>T | synonymous_variant | 0.6 |
clpC1 | 4038953 | c.1752A>G | synonymous_variant | 0.6 |
clpC1 | 4038956 | c.1749T>C | synonymous_variant | 0.6 |
clpC1 | 4038965 | c.1740T>C | synonymous_variant | 0.67 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.67 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.67 |
clpC1 | 4038980 | c.1725C>T | synonymous_variant | 0.56 |
clpC1 | 4038986 | p.Asp573Glu | missense_variant | 0.44 |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.5 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.55 |
clpC1 | 4039004 | c.1701C>G | synonymous_variant | 0.5 |
clpC1 | 4039019 | c.1686G>C | synonymous_variant | 0.45 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.45 |
clpC1 | 4039073 | c.1632C>T | synonymous_variant | 0.57 |
clpC1 | 4039079 | c.1626C>G | synonymous_variant | 0.57 |
clpC1 | 4039082 | c.1623C>T | synonymous_variant | 0.57 |
clpC1 | 4039085 | c.1620A>G | synonymous_variant | 0.5 |
clpC1 | 4039091 | c.1614G>T | synonymous_variant | 0.5 |
clpC1 | 4039097 | c.1608G>T | synonymous_variant | 0.5 |
clpC1 | 4039106 | c.1599G>T | synonymous_variant | 0.5 |
clpC1 | 4039118 | c.1587C>G | synonymous_variant | 0.5 |
clpC1 | 4039121 | c.1584T>G | synonymous_variant | 0.4 |
clpC1 | 4039124 | c.1581C>G | synonymous_variant | 0.4 |
clpC1 | 4039142 | c.1563A>G | synonymous_variant | 0.4 |
clpC1 | 4039145 | c.1560G>C | synonymous_variant | 0.5 |
clpC1 | 4039169 | p.Glu512Asp | missense_variant | 0.67 |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.67 |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.67 |
clpC1 | 4039181 | c.1522_1524delTTGinsCTC | synonymous_variant | 0.5 |
clpC1 | 4039187 | c.1518G>T | synonymous_variant | 0.5 |
clpC1 | 4039199 | p.Ala502Glu | missense_variant | 0.5 |
clpC1 | 4039324 | p.Arg461Cys | missense_variant | 0.67 |
clpC1 | 4039487 | c.1218G>C | synonymous_variant | 0.17 |
clpC1 | 4039499 | c.1206G>C | synonymous_variant | 0.17 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.15 |
clpC1 | 4039544 | c.1161C>T | synonymous_variant | 0.14 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.14 |
clpC1 | 4039559 | c.1146C>T | synonymous_variant | 0.17 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.17 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.17 |
clpC1 | 4039570 | p.Met379Leu | missense_variant | 0.17 |
clpC1 | 4039574 | p.Ala377Gly | missense_variant | 0.17 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.17 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.25 |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.25 |
clpC1 | 4039592 | c.1113G>C | synonymous_variant | 0.25 |
clpC1 | 4039603 | p.Ala368Ser | missense_variant | 0.25 |
clpC1 | 4039613 | c.1092C>T | synonymous_variant | 0.22 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.22 |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.25 |
embC | 4240511 | p.Ser217Cys | missense_variant | 0.15 |
embC | 4240648 | c.786C>T | synonymous_variant | 0.38 |
embC | 4241086 | c.1224G>A | synonymous_variant | 0.5 |
embC | 4241464 | c.1602C>A | synonymous_variant | 0.22 |
embC | 4241557 | c.1695C>T | synonymous_variant | 0.33 |
embC | 4242422 | p.Trp854Gly | missense_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 0.17 |
embA | 4245635 | p.Lys801Asn | missense_variant | 0.5 |
embB | 4246724 | p.Leu71Met | missense_variant | 0.2 |
embB | 4246731 | p.Ser73Leu | missense_variant | 0.2 |
embB | 4246822 | c.309C>A | synonymous_variant | 0.22 |
embB | 4246885 | p.Asp124Glu | missense_variant | 0.22 |
embB | 4247097 | p.Pro195His | missense_variant | 0.22 |
embB | 4247276 | p.Pro255Ser | missense_variant | 0.4 |
embB | 4248157 | c.1644A>T | synonymous_variant | 0.2 |
embB | 4248321 | p.Gly603Val | missense_variant | 0.2 |
embB | 4248719 | p.Gly736Ser | missense_variant | 0.33 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
embB | 4249724 | p.Val1071Phe | missense_variant | 0.67 |
aftB | 4266964 | p.Pro625Thr | missense_variant | 0.4 |
aftB | 4268883 | c.-47G>T | upstream_gene_variant | 0.25 |
aftB | 4268898 | c.-62G>T | upstream_gene_variant | 0.29 |
ethA | 4327034 | p.Tyr147Phe | missense_variant | 0.33 |
whiB6 | 4338199 | c.321_322delCG | frameshift_variant | 0.5 |
whiB6 | 4338295 | p.Trp76* | stop_gained | 0.67 |
gid | 4407798 | c.405G>T | synonymous_variant | 1.0 |