TB-Profiler result

Run: SRR12006056
Summary

Run ID: SRR12006056

Sample name:

Date: 03-04-2023 05:44:43

Number of reads: 1786420

Percentage reads mapped: 69.22

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoC 762929 c.-441G>C upstream_gene_variant 0.13
rpoC 762932 c.-438G>C upstream_gene_variant 0.13
rpoB 762939 p.Met1045Leu missense_variant 0.13
rpoB 762942 p.Ile1046Val missense_variant 0.13
rpoC 762947 c.-423C>G upstream_gene_variant 0.12
rpoC 762965 c.-405T>C upstream_gene_variant 0.13
rpoC 762980 c.-390T>C upstream_gene_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473147 n.1302G>A non_coding_transcript_exon_variant 0.2
rrs 1473150 n.1305T>G non_coding_transcript_exon_variant 0.19
rrs 1473158 n.1313T>C non_coding_transcript_exon_variant 0.21
rrs 1473161 n.1316A>C non_coding_transcript_exon_variant 0.22
rrs 1473164 n.1319C>T non_coding_transcript_exon_variant 0.22
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.24
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.26
rrs 1473188 n.1343T>C non_coding_transcript_exon_variant 0.31
rrs 1473201 n.1356A>C non_coding_transcript_exon_variant 0.31
rrs 1473202 n.1357C>T non_coding_transcript_exon_variant 0.31
rrs 1473216 n.1371C>T non_coding_transcript_exon_variant 0.33
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.15
rrs 1473258 n.1413T>C non_coding_transcript_exon_variant 0.15
rrs 1473262 n.1417T>C non_coding_transcript_exon_variant 0.14
rrs 1473269 n.1424C>T non_coding_transcript_exon_variant 0.11
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.26
rrl 1476336 n.2679C>G non_coding_transcript_exon_variant 0.27
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.43
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.44
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.47
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.43
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.45
rrl 1476423 n.2766T>C non_coding_transcript_exon_variant 0.48
rrl 1476428 n.2771C>A non_coding_transcript_exon_variant 0.46
rrl 1476458 n.2801T>G non_coding_transcript_exon_variant 0.29
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.23
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.19
PPE35 2170598 c.15G>A synonymous_variant 1.0