EBG00000313325 - n.1357C>T
Drug resistance types
116 Sensitive
14 RR-TB
28 HR-TB
39 MDR-TB
23 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 2 |
| lineage4.9 | 71 |
| lineage4.5 | 6 |
| lineage4.8 | 11 |
| lineage2.2.1 | 35 |
| lineage4.3.3 | 8 |
| lineage4.1.1.3 | 8 |
| lineage4 | 11 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2 | 4 |
| 8 | |
| lineage4.6.1.1 | 7 |
| lineage4.4.1.1 | 7 |
| lineage4.2.1.1 | 2 |
| lineage4.2.1 | 3 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage4.1.2.1 | 15 |
| lineage3 | 28 |
| lineage4.6.1.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| La1.8.1 | 5 |
| lineage3.1.3 | 1 |
| lineage4.9.1 | 1 |
| lineage3.1.1 | 5 |
| lineage4.9;La1.8.1 | 1 |
| lineage4;lineage3.1 | 1 |
| lineage1.1.2 | 13 |
| La1.3 | 4 |
| lineage4.4.2 | 2 |
| lineage1.1.3.3 | 1 |
| lineage4.7 | 2 |
| lineage1.2.2.2 | 6 |
| lineage5.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage2.2 | 2 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.2 | 3 |
| lineage3;lineage2.2 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.2 | 2 |
| lineage1.2.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage4.3 | 1 |
| lineage4.4.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.6.2.2 | 1 |
| lineage4.6.3 | 1 |
| lineage3.1.2 | 1 |
| lineage1.1.1 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage5.2 | 1 |
| La3 | 1 |
| lineage4.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.8.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 313 |
Geographic prevalence
Country level data for this variant is available for 33 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6257038 | HR-TB | lineage4.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6824491 | RR-TB | lineage4.5 | cn | SRR6896147 | Sensitive | lineage4.8 | None | SRR6896576 | Other | lineage2.2.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6824490 | RR-TB | lineage4.5 | cn | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6855896 | Other | lineage4.3.4.2.1 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR502942 | Sensitive | lineage4.9 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | ERR323067 | Sensitive | lineage4.3.4.2.1 | None | SRR7131047 | MDR-TB | lineage4.3.3 | None | SRR7131114 | Other | lineage4.1.2 | None | SRR8217918 | HR-TB | None | SRR7535073 | Sensitive | lineage4.6.1.1 | None | SRR7535081 | Sensitive | lineage4.6.1.1 | None | SRR7535080 | HR-TB | lineage4.8 | None | SRR7645856 | Sensitive | lineage4.4.1.1 | None | SRR7646056 | Other | lineage4.2.1.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755705 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7829582 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR323057 | Sensitive | lineage4.9 | None | SRR9971296 | MDR-TB | lineage4.8 | None | SRR7535053 | Sensitive | lineage3 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR7645853 | MDR-TB | lineage2.2.1 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | ERR023742 | Sensitive | lineage3.1.3 | None | ERR025888 | Sensitive | lineage4 | None | ERR037235 | Sensitive | lineage4.9 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796619 | Other | lineage4.3.3 | None | ERR126611 | Sensitive | lineage4.9.1 | None | ERR3283034 | Sensitive | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR405216 | Sensitive | lineage3.1.1 | None | ERR3439235 | Sensitive | lineage4.9 | None | ERR3439294 | Other | lineage4.9 | None | ERR3468549 | Sensitive | lineage4.9 | None | ERR3468754 | Sensitive | lineage4.9 | None | ERR387051 | HR-TB | None | ERR405191 | Other | lineage4.9 | None | ERR4188072 | Other | lineage4.9;La1.8.1 | None | ERR405217 | Sensitive | lineage2.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR405222 | Sensitive | lineage4;lineage3.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4769539 | Sensitive | lineage4.9 | None | ERR4188158 | Other | lineage4.9 | None | ERR4586795 | Other | La1.8.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR473279 | Other | lineage4.9 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR473340 | Sensitive | lineage1.1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769453 | Other | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769517 | Other | La1.3 | None | ERR5865065 | MDR-TB | lineage4.8 | None | ERR4811101 | Other | lineage4.4.2 | None | ERR5864927 | MDR-TB | lineage2.2.1 | None | ERR4799031 | MDR-TB | lineage1.1.3.3 | in | ERR5865230 | MDR-TB | lineage2.2.1 | None | ERR5865066 | MDR-TB | lineage4.8 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR5979787 | Other | lineage4.9 | None | ERR5979817 | Sensitive | lineage4.9 | None | ERR5987400 | MDR-TB | lineage2.2.1.1 | None | ERR6197025 | Other | lineage4.7 | None | ERR6197036 | Other | lineage4 | None | ERR736820 | MDR-TB | lineage1.2.2.2 | None | ERR736850 | Sensitive | lineage4.9 | None | ERR736825 | Sensitive | lineage4.9 | None | ERR970453 | RR-TB | lineage4.1.2 | None | ERR751414 | MDR-TB | lineage4 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR909753 | Other | lineage5.1.1 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR773804 | Sensitive | lineage4.9 | None | ERR970455 | RR-TB | lineage4.1.2 | None | SRR1062869 | Pre-XDR-TB | lineage4.9 | None | ERR970457 | RR-TB | lineage4.1.1.3 | None | SRR057732 | Sensitive | lineage4.1.1.2 | ca | SRR1002681 | HR-TB | lineage4.1 | None | SRR1062868 | HR-TB | lineage4.9 | None | ERR970458 | RR-TB | lineage4.1.1.3 | None | ERR972802 | RR-TB | lineage4.1.1.3 | None | ERR972801 | RR-TB | lineage2.2.1.1 | None | SRR1013530 | HR-TB | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1172706 | Sensitive | lineage2.2.1 | None | SRR11342635 | MDR-TB | lineage4.8 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR1165236 | Pre-XDR-TB | lineage2.2 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1167264 | Pre-XDR-TB | lineage2.2 | None | SRR1168955 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR1169591 | Sensitive | lineage1.1.2 | None | SRR1172086 | Sensitive | lineage1.1.2 | None | SRR1172125 | HR-TB | lineage1.1.2 | None | SRR1172282 | Other | lineage4.9 | None | SRR1172293 | Sensitive | lineage1.1.2 | None | SRR1172832 | Sensitive | lineage2.2.1 | None | SRR1172751 | HR-TB | lineage3.1.2.1 | None | SRR1172798 | Sensitive | lineage2.2.1 | None | SRR1173045 | Sensitive | lineage3 | None | SRR1172874 | Sensitive | lineage2.2.1 | None | SRR1173014 | MDR-TB | lineage3 | None | SRR1172861 | MDR-TB | lineage3 | None | SRR1173105 | MDR-TB | lineage3 | None | SRR1173117 | Sensitive | lineage1.1.2 | None | SRR1173269 | Sensitive | lineage4.9 | None | SRR1173139 | Sensitive | lineage4.9 | None | SRR1173174 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173310 | MDR-TB | None | SRR1173344 | Sensitive | lineage4.6.1.1 | None | SRR1173367 | MDR-TB | lineage3 | None | SRR1173343 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173377 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173380 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173445 | Sensitive | lineage3 | None | SRR1173704 | Sensitive | lineage4.6.1.1 | None | SRR1173508 | Sensitive | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173621 | MDR-TB | lineage3 | None | SRR1173686 | MDR-TB | lineage3 | None | SRR1173705 | Other | lineage4.9 | None | SRR1173768 | Sensitive | lineage4.9 | None | SRR1173727 | MDR-TB | lineage3 | None | SRR1173764 | Sensitive | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173800 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1173773 | Sensitive | lineage2.2.1 | None | SRR1175135 | Sensitive | lineage1.2.2.2 | None | SRR1173833 | Other | lineage4.9 | None | SRR1175053 | Other | lineage1.2.1.2.1 | None | SRR1175105 | MDR-TB | lineage3 | None | SRR1175131 | Sensitive | lineage2.2.1 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR1174277 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175107 | Sensitive | lineage2.2.1 | None | SRR1180487 | Sensitive | lineage1.1.2 | None | SRR1175165 | Sensitive | lineage2.2.1 | None | SRR1180294 | Sensitive | lineage1.1.2 | None | SRR1180479 | Other | lineage1.1.2 | None | SRR13591376 | Sensitive | lineage4.3.2 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR12006056 | Sensitive | lineage4.9 | None | SRR12006067 | Sensitive | lineage4.9 | None | SRR12006068 | Sensitive | lineage4.9 | None | SRR12006070 | Sensitive | lineage4.9 | None | SRR12006082 | Sensitive | lineage4.9 | None | SRR12006076 | Sensitive | lineage4.9 | None | SRR12006075 | Sensitive | lineage4.9 | None | SRR12006077 | Sensitive | lineage4.9 | None | SRR12006088 | Sensitive | lineage4.9 | None | SRR12006090 | Sensitive | lineage4.9 | None | SRR12006091 | Sensitive | lineage4.9 | None | SRR12006095 | Sensitive | lineage4.9 | None | SRR12006098 | Sensitive | lineage4.9 | None | SRR12006097 | Sensitive | lineage4.9 | None | SRR12006102 | Sensitive | lineage4.9 | None | SRR12634543 | Sensitive | lineage4.8 | None | SRR13591377 | Sensitive | lineage4.1.1.3 | None | SRR13861421 | Other | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782555 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315833 | Sensitive | lineage4.9 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR18002872 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277490 | Sensitive | lineage4.5 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR22424919 | MDR-TB | lineage1.1.2 | None | SRR22424765 | MDR-TB | lineage4 | None | SAMN02599131 | MDR-TB | lineage3 | None | ERR4815114 | Sensitive | lineage4.1.2.1 | gb | ERR4815257 | HR-TB | lineage4.4.1.1 | None | SAMN02599090 | MDR-TB | lineage3 | None | ERR4814623 | Other | lineage4.8 | None | ERR4814573 | Other | lineage1.1.3.2 | None | ERR4814597 | Other | lineage4.7 | None | ERR164004 | Sensitive | lineage4.9;lineage4.3 | None | ERR4815488 | HR-TB | lineage4.4.1 | None | ERR4814723 | Sensitive | lineage4.1.2.1 | gb | ERR1750906 | Sensitive | lineage4.3.3 | za | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4814905 | Other | lineage4.8 | gb | ERR4815517 | Other | lineage1.2.2.2 | None | SAMN02599073 | Sensitive | lineage2.2.1 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815040 | Other | lineage4.2.2.2 | None | SRR3675456 | HR-TB | None | ERR4816982 | Other | lineage4 | None | ERR4816231 | Other | lineage4 | None | ERR2027233 | RR-TB | lineage4.1.2.1 | None | SRR3675555 | HR-TB | None | SAMN02598990 | Sensitive | lineage1.1.2 | None | SAMN02567670 | Sensitive | lineage4.6.1.1 | None | SAMN02599067 | Sensitive | lineage2.2.1 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4816454 | Sensitive | lineage1.1.3.1 | None | ERR4816417 | Other | lineage4.9 | None | ERR2124091 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2179662 | Sensitive | lineage4.5 | cn | ERR2124088 | Other | lineage4.4.1.1 | None | ERR2124092 | HR-TB | lineage1.2.2.2 | None | ERR2124090 | MDR-TB | lineage2.2.1 | None | SAMN02567685 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816571 | Other | lineage1.1.2 | None | SAMN02599052 | Sensitive | lineage2.2.1 | None | SRR3743190 | Sensitive | lineage4.1.2.1 | None | SAMN02403473 | Pre-XDR-TB | lineage2.2.2 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR2510736 | Other | lineage4.1.2.1 | None | ERR4817817 | Sensitive | lineage3 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | SAMN02599089 | MDR-TB | lineage3 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2245344 | Sensitive | lineage3.1.1 | no | ERR2513056 | HR-TB | lineage4.1.2.1 | gb | SAMN02599130 | MDR-TB | lineage3 | None | SAMN02599091 | Sensitive | lineage1.2.2.2 | None | ERR4818752 | Other | lineage3 | None | SAMN02599072 | Sensitive | lineage2.2.1 | None | ERR4818763 | Other | lineage3 | gb | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR4818232 | Other | lineage4.1.2 | gb | ERR4818200 | Other | lineage3.1.2 | gb | SRR1723829 | Sensitive | lineage2.2.1 | None | ERR4818845 | Sensitive | lineage4.9 | None | ERR245790 | Sensitive | None | ERR2513223 | Other | lineage4.1.2.1 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR2512660 | Sensitive | lineage3 | gb | ERR1873445 | MDR-TB | lineage2.2.1 | None | ERR4818432 | HR-TB | lineage4.5 | gb | ERR2512689 | Other | lineage4.3.3 | gb | SRR1723899 | Sensitive | lineage4.5 | cn | SRR5152904 | Other | lineage2.2.1 | None | ERR4815449 | HR-TB | lineage4.3.3 | gb | SAMN02599017 | Sensitive | lineage2.2.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR2513273 | Other | lineage4.1.2.1 | None | SRR5152926 | MDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | None | ERR4819171 | Sensitive | lineage1.2.2.2 | gb | ERR1873557 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02599071 | Sensitive | lineage3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR2514073 | Other | lineage4.1.1.3.1 | None | ERR4820484 | Other | lineage4.8 | None | ERR1023509 | Other | None | ERR1198993 | Sensitive | lineage4.6.1.1 | ug | ERR4820923 | Other | lineage4.3.4.2 | None | ERR4819989 | Sensitive | lineage4.1.2.1 | gb | ERR4820161 | Other | lineage3 | None | SRR5341346 | Sensitive | lineage3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR4821802 | Other | La3 | gb | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821054 | Other | lineage3 | None | SRR6045450 | Other | lineage4.9 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821057 | HR-TB | lineage4 | None | ERR2747617 | Other | La1.8.1 | None | ERR2747685 | Other | La1.8.1 | None | ERR2747678 | Other | La1.8.1 | None | ERR2179699 | Other | lineage4.4.2 | cn | SRR6045162 | Sensitive | lineage4.9 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4822033 | Other | lineage3 | None | ERR4822043 | Other | lineage4.1.1 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821519 | Other | lineage3 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR6045124 | Other | lineage4.9 | None | ERR4821492 | HR-TB | lineage3 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4821725 | Other | lineage4.8.2 | gb | SRR6046152 | Other | lineage4.9 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6046250 | Other | lineage4.9 | None | ERR4828420 | Sensitive | lineage2.2.1 | None | SRR6152838 | Other | lineage2.2.1.1 | ca | SRR6046737 | Other | lineage4.9 | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6397640 | Other | lineage4.2.1.1 | None |
|---|
