Run ID: ERR2446413
Sample name:
Date: 15-08-2022 11:02:15
Number of reads: 382778
Percentage reads mapped: 99.65
Strain: lineage4.6.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.3 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8049 | p.Ser250Ala | missense_variant | 1.0 |
rpoB | 762873 | p.Tyr1023His | missense_variant | 0.36 |
rpoB | 762876 | p.Ile1024Tyr | missense_variant | 0.33 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.33 |
rpoB | 762888 | p.His1028Asn | missense_variant | 0.41 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.41 |
rpoB | 762911 | p.Ile1035Met | missense_variant | 0.42 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.38 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.39 |
rpoC | 762929 | c.-441G>T | upstream_gene_variant | 0.41 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.39 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.41 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.41 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.4 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.35 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.31 |
rpoC | 762998 | c.-372G>A | upstream_gene_variant | 0.27 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.23 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.41 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.53 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.5 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.5 |
rpoC | 764668 | c.1299C>T | synonymous_variant | 0.53 |
rpoC | 764672 | p.Gln435Tyr | missense_variant | 0.53 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.53 |
rpoC | 764678 | p.Lys437Arg | missense_variant | 0.5 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.48 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.45 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 0.45 |
rpoC | 764875 | c.1506C>G | synonymous_variant | 0.14 |
rpoC | 764887 | c.1518G>T | synonymous_variant | 0.3 |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.3 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.3 |
rpoC | 764902 | c.1533C>G | synonymous_variant | 0.32 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.3 |
rpoC | 764912 | p.Met515Val | missense_variant | 0.3 |
rpoC | 764918 | p.Val517Ile | missense_variant | 0.3 |
rpoC | 764935 | c.1566T>C | synonymous_variant | 0.29 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.32 |
rpoC | 764953 | c.1584G>C | synonymous_variant | 0.29 |
rpoC | 764956 | c.1587T>C | synonymous_variant | 0.29 |
rpoC | 764957 | p.Glu530Thr | missense_variant | 0.29 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.32 |
rpoC | 764998 | c.1629G>C | synonymous_variant | 0.27 |
rpoC | 765974 | p.Asp869Tyr | missense_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303143 | c.213G>T | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472243 | n.398G>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472256 | n.411T>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472599 | n.754G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472648 | n.803G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472697 | n.852T>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472716 | n.871C>G | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472827 | n.982G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.69 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.55 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473139 | n.1294T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473201 | n.1356A>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 1.0 |
Rv1979c | 2222580 | c.585G>T | synonymous_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290036 | c.-795C>A | upstream_gene_variant | 0.17 |
thyA | 3073956 | c.516G>T | synonymous_variant | 0.11 |
Rv3083 | 3448613 | p.Arg37Leu | missense_variant | 0.2 |
Rv3236c | 3612775 | c.342C>T | synonymous_variant | 0.18 |
ubiA | 4269601 | p.Val78Asp | missense_variant | 0.17 |