Rv0668 - c.1584G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
28 Sensitive
2 RR-TB
33 HR-TB
4 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 3 |
| lineage4.9 | 48 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.1 | 5 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage2.2.1.1 | 2 |
| La1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.5 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.6.3 | 1 |
| La1.7.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage4.8 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.1.2.1 | 1 |
| lineage3.1.2.1 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| 2 | |
| lineage4.3.3 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4819546 | HR-TB | lineage3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9971026 | Sensitive | lineage4.4.1.1.1 | None | SRR1062865 | Sensitive | lineage2.2.2 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1238558 | Other | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR176751 | Other | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR176651 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | ERR181887 | Other | lineage4.9 | None | ERR2027233 | Sensitive | lineage4.1.2.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR6046141 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1013528 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | SRR1141261 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR11462861 | Other | La1.8.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None |
|---|
