Rv0668 - c.1299C>T
Drug resistance types
82 Sensitive
43 RR-TB
82 HR-TB
45 MDR-TB
16 Pre-XDR-TB
1 XDR-TB
128 Other
lineage Counts
| lineage | Count |
|---|---|
| 64 | |
| lineage4.9 | 90 |
| lineage3.1 | 1 |
| lineage2.1 | 1 |
| lineage4.8 | 9 |
| lineage4.5 | 4 |
| lineage4;lineage2 | 1 |
| lineage1.1.2 | 11 |
| lineage3 | 25 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1 | 3 |
| lineage4.3.4.2 | 1 |
| lineage4.6.3 | 1 |
| lineage4.1.2 | 2 |
| lineage4.2.1 | 3 |
| lineage4 | 39 |
| lineage4.3.3 | 3 |
| lineage4.1.2.1 | 11 |
| lineage5.1.4 | 1 |
| lineage1.1.1 | 2 |
| lineage4.3.4.2.1 | 5 |
| lineage2.2.1 | 39 |
| lineage4.4.1.1 | 4 |
| lineage1.2.2.2 | 2 |
| lineage4.6.1 | 4 |
| lineage4.1.1.3 | 4 |
| lineage4.6.2.2 | 4 |
| lineage5.2 | 2 |
| lineage2.2 | 10 |
| La2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage2.2.1.1 | 6 |
| lineage4.3 | 2 |
| La1.8.1 | 10 |
| lineage4.3.2.1 | 3 |
| lineage4.8.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.4.2 | 1 |
| lineage6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.3 | 5 |
| lineage4.9;La1.3 | 2 |
| La1.2 | 1 |
| lineage1.1.3.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.9;lineage2.2.1 | 1 |
| lineage4.4.1.1;lineage4.1.2.1 | 1 |
| La1.6 | 1 |
| La3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 397 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | None | ERR2027290 | RR-TB | lineage3.1 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | ERR4817069 | RR-TB | None | SRR3675571 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR7898221 | MDR-TB | lineage1.1.2 | None | ERR4816466 | HR-TB | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02599089 | MDR-TB | lineage3 | None | ERR4817826 | RR-TB | lineage4.5 | None | ERR4817832 | Sensitive | lineage1.2.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | SAMN02599179 | MDR-TB | lineage1.1.2 | None | ERR4818904 | Other | lineage4.8 | None | ERR1035162 | Other | None | ERR2446413 | Sensitive | lineage4.6.3 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341396 | Other | lineage4 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4817555 | RR-TB | lineage3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5341373 | HR-TB | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341408 | Sensitive | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819462 | Other | lineage4 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | SAMN02599061 | MDR-TB | lineage3 | None | ERR1023509 | Other | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2514692 | Other | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341315 | Sensitive | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820030 | Other | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR2693237 | Other | lineage4.9 | None | SAMN02599068 | Sensitive | lineage1.2.2.2 | None | SRR6046210 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR2517475 | Other | lineage4 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | SRR6045526 | HR-TB | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SAMN02381047 | Sensitive | lineage4.6.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR5535933 | HR-TB | None | ERR2679270 | HR-TB | lineage4.1.2 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821679 | Other | lineage4.3.3 | None | ERR4821550 | Other | lineage2.2.1 | None | ERR2693227 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6044876 | Sensitive | lineage4 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6045327 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046376 | Other | lineage3 | None | ERR4829208 | RR-TB | lineage4.8 | None | ERR323037 | HR-TB | lineage4 | None | ERR4829333 | RR-TB | lineage4 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6046482 | HR-TB | None | SRR6046815 | Other | lineage3 | None | SRR6046839 | Other | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046609 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831638 | Sensitive | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502524 | HR-TB | La2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6982246 | Sensitive | lineage4 | None | ERR4831739 | MDR-TB | lineage2.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR4831863 | HR-TB | lineage2.2.1.1 | None | ERR502943 | HR-TB | None | ERR502889 | Other | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311092 | Other | La1.8.1 | None | SRR7131160 | Sensitive | lineage3 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR323039 | HR-TB | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR7645936 | Sensitive | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323053 | HR-TB | None | ERR036207 | Other | lineage4.9 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | DRR184982 | RR-TB | lineage2.2.1 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR10796569 | Other | lineage4.9 | None | ERR133986 | HR-TB | None | ERR037234 | Sensitive | lineage4.9 | None | ERR1023525 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283053 | Other | lineage4.9 | None | ERR3468615 | Other | La1.8.1 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3468671 | Other | La1.8.1 | None | ERR3468655 | Other | La1.8.1 | None | ERR3468670 | Other | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3468693 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | None | ERR3468702 | Other | La1.8.1 | None | ERR3797068 | Other | La1.8.1 | None | ERR3797067 | Other | La1.8.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400350 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR473279 | Other | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769408 | Other | La1.3 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4797313 | HR-TB | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769516 | Other | La1.3 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4798769 | Other | lineage1.1.3.3 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4812155 | Sensitive | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR736865 | HR-TB | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8975534 | Sensitive | lineage4.3.4.2.1 | None | ERR987722 | HR-TB | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9787336 | Other | lineage6 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9896144 | Other | lineage3 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR990545 | Other | lineage3 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1013617 | MDR-TB | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049672 | Other | lineage3 | None | SRR1049743 | Sensitive | lineage4.6.1 | None | SRR1062867 | RR-TB | lineage4.9;lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1049744 | Sensitive | lineage4.6.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR1062933 | Sensitive | lineage4.9 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR1169473 | Sensitive | lineage1.1.2 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140736 | RR-TB | None | SRR11462861 | Other | La1.8.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1169591 | Sensitive | lineage1.1.2 | None | SRR1172086 | Sensitive | lineage1.1.2 | None | SRR1172938 | MDR-TB | lineage3 | None | SRR1172310 | HR-TB | None | SRR1172710 | Sensitive | lineage1.2.2.2 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172848 | MDR-TB | lineage1.1.2 | None | SRR1172873 | MDR-TB | lineage1.1.2 | None | SRR1173037 | Sensitive | lineage1.1.2 | None | SRR1173013 | Sensitive | lineage1.1.2 | None | SRR1173014 | MDR-TB | lineage3 | None | SRR1173055 | MDR-TB | lineage2.2.1 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173165 | Sensitive | lineage2.2.1 | None | SRR1173310 | MDR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1173335 | Sensitive | lineage4.9 | None | SRR1173385 | Sensitive | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173727 | MDR-TB | lineage3 | None | SRR1173740 | Other | None | SRR1173770 | Other | lineage4.9 | None | SRR1173865 | Sensitive | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1173656 | Sensitive | lineage1.1.2 | None | SRR1174897 | HR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14801749 | Sensitive | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002950 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303813 | HR-TB | lineage4.8 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR19304064 | MDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675455 | Sensitive | lineage4 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | SAMN02599090 | MDR-TB | lineage3 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675477 | Other | lineage4.9 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR158583 | HR-TB | None | ERR4815310 | Other | None | SRR3675502 | Other | None | SAMN02599094 | Sensitive | lineage1.1.2 | None | SRR3105762 | HR-TB | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3675247 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675279 | Other | None | SRR3675318 | Other | lineage4.9 | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR176643 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR176751 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675387 | Sensitive | None | ERR176740 | HR-TB | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR192070 | Other | None | ERR4816964 | Other | lineage4.9 | None |
|---|
