TB-Profiler result

Run: ERR4815121

Summary

Run ID: ERR4815121

Sample name:

Date: 01-04-2023 13:41:05

Number of reads: 3909053

Percentage reads mapped: 85.67

Strain: lineage4.6.2.2

Drug-resistance: HR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.6 Euro-American T;LAM None 1.0
lineage4.6.2 Euro-American T;LAM RD726 1.0
lineage4.6.2.2 Euro-American (Cameroon) LAM10-CAM RD726 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.31 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.6 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.29 kanamycin, capreomycin, aminoglycosides, amikacin
katG 2155168 p.Ser315Thr missense_variant 1.0 isoniazid
gid 4408087 c.115delC frameshift_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 761537 c.1731C>G synonymous_variant 0.16
rpoB 761552 c.1746G>C synonymous_variant 0.16
rpoB 761554 p.Val583Ala missense_variant 0.15
rpoB 761561 c.1755C>G synonymous_variant 0.16
rpoB 761570 c.1764T>C synonymous_variant 0.16
rpoB 761600 c.1794T>C synonymous_variant 0.21
rpoB 761606 c.1800C>G synonymous_variant 0.24
rpoB 761612 c.1806G>C synonymous_variant 0.21
rpoB 761615 c.1809A>G synonymous_variant 0.23
rpoB 761632 p.Ala609Gly missense_variant 0.11
rpoB 762053 c.2247T>C synonymous_variant 0.11
rpoB 762062 c.2256T>C synonymous_variant 0.12
rpoB 762065 c.2259T>C synonymous_variant 0.11
rpoB 762114 p.Ile770Val missense_variant 0.11
rpoB 762209 c.2403C>G synonymous_variant 0.15
rpoB 762212 c.2406G>C synonymous_variant 0.15
rpoB 762233 c.2427G>C synonymous_variant 0.25
rpoB 762245 c.2439G>C synonymous_variant 0.23
rpoB 762249 c.2443C>T synonymous_variant 0.23
rpoB 762254 c.2448T>C synonymous_variant 0.22
rpoB 762266 c.2460T>C synonymous_variant 0.23
rpoB 762293 c.2487T>C synonymous_variant 0.15
rpoB 762296 c.2490G>C synonymous_variant 0.15
rpoB 762297 p.Leu831Met missense_variant 0.16
rpoC 763504 c.135C>A synonymous_variant 0.17
rpoC 763507 c.138G>C synonymous_variant 0.2
rpoC 763528 c.159G>T synonymous_variant 0.22
rpoC 763531 c.162G>C synonymous_variant 0.22
rpoC 763534 c.165T>C synonymous_variant 0.23
rpoC 763537 c.168C>G synonymous_variant 0.23
rpoC 763546 c.177A>G synonymous_variant 0.22
rpoC 763570 c.201G>C synonymous_variant 0.25
rpoC 763573 c.204G>C synonymous_variant 0.25
rpoC 763594 c.225C>T synonymous_variant 0.28
rpoC 763633 c.264T>C synonymous_variant 0.18
rpoC 763642 c.273G>C synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.14
rpoC 763666 c.297G>C synonymous_variant 0.12
rpoC 763669 c.300C>G synonymous_variant 0.11
rpoC 763675 c.306C>G synonymous_variant 0.11
rpoC 764521 c.1152T>C synonymous_variant 0.1
rpoC 764524 c.1155C>T synonymous_variant 0.11
rpoC 764539 c.1170C>G synonymous_variant 0.11
rpoC 764548 c.1179G>T synonymous_variant 0.13
rpoC 764560 c.1191T>C synonymous_variant 0.11
rpoC 764566 c.1197C>G synonymous_variant 0.1
rpoC 764611 c.1242G>C synonymous_variant 0.1
rpoC 764650 c.1281G>T synonymous_variant 0.13
rpoC 764665 c.1296C>G synonymous_variant 0.16
rpoC 764668 c.1299C>T synonymous_variant 0.17
rpoC 764677 c.1308C>G synonymous_variant 0.19
rpoC 764706 p.Leu446Gln missense_variant 0.18
rpoC 764713 c.1344G>C synonymous_variant 0.16
rpoC 764722 c.1353G>C synonymous_variant 0.17
rpoC 764746 c.1377G>C synonymous_variant 0.12
rpoC 764752 c.1383G>C synonymous_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpR5 778298 c.-692C>T upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781769 p.Glu70Asp missense_variant 0.1
rpsL 781796 p.Met79Ile missense_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.28
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.32
rrs 1472148 n.303T>C non_coding_transcript_exon_variant 0.52
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.52
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.58
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.63
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.55
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.24
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.24
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.2
rrs 1472582 n.737G>A non_coding_transcript_exon_variant 0.2
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.2
rrs 1472597 n.752G>A non_coding_transcript_exon_variant 0.24
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.24
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.25
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.24
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.24
rrs 1472667 n.822T>C non_coding_transcript_exon_variant 0.24
rrs 1472674 n.829T>C non_coding_transcript_exon_variant 0.24
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.23
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.25
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.25
rrs 1472685 n.840G>A non_coding_transcript_exon_variant 0.28
rrs 1472694 n.849C>T non_coding_transcript_exon_variant 0.35
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.35
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.43
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.43
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.57
rrs 1472791 n.946G>T non_coding_transcript_exon_variant 0.53
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.23
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.23
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.21
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.22
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.42
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.39
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.4
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.4
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.49
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.49
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.49
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.45
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.43
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.44
rrs 1473065 n.1220C>A non_coding_transcript_exon_variant 0.43
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.44
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.4
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.35
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.31
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.31
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.31
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.29
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.29
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.33
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.33
rrs 1473127 n.1282G>A non_coding_transcript_exon_variant 0.37
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.4
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.48
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.62
rrs 1473274 n.1429C>A non_coding_transcript_exon_variant 0.61
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.62
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.22
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.44
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.43
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.38
rrs 1473319 n.1474C>T non_coding_transcript_exon_variant 0.38
rrl 1473844 n.187C>T non_coding_transcript_exon_variant 0.56
rrl 1473870 n.213G>A non_coding_transcript_exon_variant 0.54
rrl 1473871 n.214T>C non_coding_transcript_exon_variant 0.54
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.56
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.55
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.55
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.47
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.47
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.39
rrl 1473922 n.265A>T non_coding_transcript_exon_variant 0.31
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.31
rrl 1474124 n.467G>C non_coding_transcript_exon_variant 0.27
rrl 1474125 n.468C>G non_coding_transcript_exon_variant 0.28
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.26
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.24
rrl 1474141 n.484G>C non_coding_transcript_exon_variant 0.24
rrl 1474142 n.485C>G non_coding_transcript_exon_variant 0.24
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.27
rrl 1474179 n.522C>T non_coding_transcript_exon_variant 0.33
rrl 1474182 n.525C>T non_coding_transcript_exon_variant 0.39
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.39
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.39
rrl 1474201 n.544T>C non_coding_transcript_exon_variant 0.44
rrl 1474202 n.545T>A non_coding_transcript_exon_variant 0.44
rrl 1474218 n.561T>A non_coding_transcript_exon_variant 0.45
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.43
rrl 1474253 n.596A>T non_coding_transcript_exon_variant 0.29
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.2
rrl 1474280 n.623C>T non_coding_transcript_exon_variant 0.11
rrl 1474281 n.624A>G non_coding_transcript_exon_variant 0.12
rrl 1474359 n.702C>G non_coding_transcript_exon_variant 0.23
rrl 1474381 n.724T>A non_coding_transcript_exon_variant 0.23
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.21
rrl 1474402 n.745T>C non_coding_transcript_exon_variant 0.18
rrl 1474406 n.749T>G non_coding_transcript_exon_variant 0.18
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.57
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.64
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.67
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.69
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.73
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.28
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.28
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.27
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.27
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.27
rrl 1474638 n.981C>G non_coding_transcript_exon_variant 0.29
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.29
rrl 1474641 n.984G>A non_coding_transcript_exon_variant 0.32
rrl 1474660 n.1003G>A non_coding_transcript_exon_variant 0.45
rrl 1474663 n.1006C>T non_coding_transcript_exon_variant 0.45
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.4
rrl 1474676 n.1019T>C non_coding_transcript_exon_variant 0.38
rrl 1474677 n.1020A>G non_coding_transcript_exon_variant 0.37
rrl 1474690 n.1033C>T non_coding_transcript_exon_variant 0.4
rrl 1474707 n.1051_1052delCG non_coding_transcript_exon_variant 0.25
rrl 1474713 n.1056_1057insAA non_coding_transcript_exon_variant 0.2
rrl 1474716 n.1059A>G non_coding_transcript_exon_variant 0.25
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.26
rrl 1474749 n.1092C>T non_coding_transcript_exon_variant 0.14
rrl 1474753 n.1097delC non_coding_transcript_exon_variant 0.15
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.23
rrl 1474779 n.1122G>A non_coding_transcript_exon_variant 0.27
rrl 1474782 n.1125G>A non_coding_transcript_exon_variant 0.27
rrl 1474783 n.1126G>A non_coding_transcript_exon_variant 0.32
rrl 1474790 n.1133C>T non_coding_transcript_exon_variant 0.33
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.33
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.39
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.4
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 0.36
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.38
rrl 1474832 n.1175A>T non_coding_transcript_exon_variant 0.38
rrl 1474869 n.1212G>T non_coding_transcript_exon_variant 0.45
rrl 1474883 n.1226T>C non_coding_transcript_exon_variant 0.41
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.45
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.45
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.45
rrl 1474938 n.1281G>A non_coding_transcript_exon_variant 0.4
rrl 1474945 n.1288C>T non_coding_transcript_exon_variant 0.18
rrl 1475508 n.1851A>T non_coding_transcript_exon_variant 0.38
rrl 1475517 n.1860C>T non_coding_transcript_exon_variant 0.38
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.38
rrl 1475538 n.1881T>A non_coding_transcript_exon_variant 0.27
rrl 1475539 n.1882A>T non_coding_transcript_exon_variant 0.27
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.31
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 0.29
rrl 1475548 n.1891C>T non_coding_transcript_exon_variant 0.29
rrl 1475549 n.1892T>C non_coding_transcript_exon_variant 0.29
rrl 1475550 n.1893A>G non_coding_transcript_exon_variant 0.29
rrl 1475562 n.1905C>T non_coding_transcript_exon_variant 0.27
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.27
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.27
rrl 1475655 n.1998T>G non_coding_transcript_exon_variant 0.38
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.39
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.56
rrl 1475752 n.2095C>G non_coding_transcript_exon_variant 0.53
rrl 1475753 n.2096C>A non_coding_transcript_exon_variant 0.53
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.53
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.54
rrl 1475771 n.2114A>C non_coding_transcript_exon_variant 0.51
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.53
rrl 1475776 n.2119G>C non_coding_transcript_exon_variant 0.53
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.53
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.56
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.65
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.56
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.56
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.56
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.39
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.37
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.28
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.23
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.17
rrl 1475990 n.2333G>A non_coding_transcript_exon_variant 0.15
rrl 1475997 n.2340A>G non_coding_transcript_exon_variant 0.17
rrl 1476001 n.2344T>C non_coding_transcript_exon_variant 0.17
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.2
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.28
rrl 1476164 n.2507A>G non_coding_transcript_exon_variant 0.28
rrl 1476165 n.2508T>G non_coding_transcript_exon_variant 0.28
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.26
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.38
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.36
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.36
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.36
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.33
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.37
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.39
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.47
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.38
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.3
rrl 1476252 n.2595T>G non_coding_transcript_exon_variant 0.3
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.32
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.3
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.47
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.48
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.5
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.5
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.62
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.75
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.78
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.56
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.45
rrl 1476523 n.2866T>C non_coding_transcript_exon_variant 0.42
rrl 1476524 n.2867C>A non_coding_transcript_exon_variant 0.42
rrl 1476525 n.2868A>G non_coding_transcript_exon_variant 0.42
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.3
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.3
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.31
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.31
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.19
rpsA 1833676 c.135A>G synonymous_variant 0.13
rpsA 1833679 c.138G>C synonymous_variant 0.14
rpsA 1833685 c.144G>C synonymous_variant 0.17
rpsA 1833697 c.156C>G synonymous_variant 0.18
rpsA 1833700 c.159C>T synonymous_variant 0.18
rpsA 1833721 c.180A>G synonymous_variant 0.21
rpsA 1833727 c.186G>C synonymous_variant 0.18
rpsA 1833733 c.192C>G synonymous_variant 0.14
rpsA 1833734 p.Ala65Ser missense_variant 0.14
rpsA 1833739 c.198C>T synonymous_variant 0.13
rpsA 1833742 c.201A>G synonymous_variant 0.12
rpsA 1833748 c.207C>G synonymous_variant 0.12
rpsA 1833997 c.456G>C synonymous_variant 0.11
rpsA 1834015 c.474G>C synonymous_variant 0.16
rpsA 1834024 c.483G>C synonymous_variant 0.22
rpsA 1834034 p.Ile165Val missense_variant 0.21
rpsA 1834040 p.Lys167Gln missense_variant 0.24
rpsA 1834069 c.528G>C synonymous_variant 0.24
rpsA 1834090 c.549G>C synonymous_variant 0.16
rpsA 1834096 c.555G>C synonymous_variant 0.14
rpsA 1834102 c.561T>C synonymous_variant 0.14
rpsA 1834249 c.708T>C synonymous_variant 0.12
rpsA 1834261 c.720A>G synonymous_variant 0.15
rpsA 1834264 c.723G>C synonymous_variant 0.15
rpsA 1834286 p.Ser249Gly missense_variant 0.13
rpsA 1834294 c.753G>C synonymous_variant 0.12
rpsA 1834298 p.Gln253Glu missense_variant 0.12
rpsA 1834303 c.762T>C synonymous_variant 0.13
rpsA 1834306 c.765T>C synonymous_variant 0.13
rpsA 1834307 p.Asp256Gln missense_variant 0.13
rpsA 1834327 c.786G>C synonymous_variant 0.15
rpsA 1834330 c.789C>G synonymous_variant 0.12
rpsA 1834447 c.906C>G synonymous_variant 0.11
rpsA 1834451 c.910T>C synonymous_variant 0.11
rpsA 1834456 c.915T>C synonymous_variant 0.11
rpsA 1834459 c.918G>C synonymous_variant 0.1
rpsA 1834468 c.927A>G synonymous_variant 0.1
rpsA 1834474 c.933C>G synonymous_variant 0.1
rpsA 1834489 c.948T>C synonymous_variant 0.1
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2221746 c.1416_1418dupCCG disruptive_inframe_insertion 0.96
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
Rv3083 3448567 p.His22Asp missense_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
clpC1 4039826 c.879C>G synonymous_variant 0.12
clpC1 4039831 c.874T>C synonymous_variant 0.12
clpC1 4039838 p.Leu289Ile missense_variant 0.13
clpC1 4039850 c.855T>C synonymous_variant 0.14
clpC1 4039865 c.840T>C synonymous_variant 0.16
clpC1 4039871 c.834C>G synonymous_variant 0.14
clpC1 4039875 p.Asn277Arg missense_variant 0.14
embA 4242643 c.-590C>T upstream_gene_variant 1.0
aftB 4267272 p.Lys522Arg missense_variant 1.0
ethR 4326739 c.-810G>C upstream_gene_variant 1.0
ethA 4328004 c.-531C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0