Rv0668 - c.1155C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
74 Sensitive
10 RR-TB
18 HR-TB
9 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 11 |
| La1;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage4.9 | 68 |
| lineage4.4.1.1.1 | 2 |
| M.canetti | 12 |
| lineage6.1.3 | 1 |
| La1.6 | 1 |
| La3;M.canetti | 8 |
| La1.7.1 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.1.2 | 1 |
| lineage3 | 5 |
| 2 | |
| lineage4.3.2.1 | 3 |
| lineage2.2.2 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.2 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.1.2.1 | 2 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.7 | 1 |
| lineage4.3.3 | 2 |
| La2;M.canetti | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage4.8 | 1 |
| lineage1.2.2.2 | 1 |
| La1.8.1 | 2 |
| lineage3;lineage4 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.4.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 160 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR12708392 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR266120 | Sensitive | M.canetti | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10993951 | RR-TB | La1.6 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR5341453 | Other | lineage4.9 | None | SRR21469202 | Other | La1.7.1 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | ERR4815556 | RR-TB | lineage3 | None | SRR5341456 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4817069 | RR-TB | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR29772570 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR1049672 | Other | lineage3 | None | ERR4769418 | Other | La1.2 | None | ERR4820503 | Sensitive | lineage2.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR18289195 | Sensitive | M.canetti | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR1181349 | Sensitive | lineage4 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR21469201 | Other | La1.7.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1062918 | Other | lineage3 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR1336823 | Sensitive | La3;M.canetti | None | SRR1140724 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR24061597 | Sensitive | M.canetti | None | ERR4796254 | Sensitive | lineage4.9 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR1173170 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR369151 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10522763 | Sensitive | M.canetti | None | ERR266125 | Other | M.canetti | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2.1 | None | SRR7236330 | Other | La1.8.1 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR1062928 | Other | lineage4.1.2.1;lineage4.9 | None | SRR19303773 | Other | lineage4.6.2.2 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1062871 | RR-TB | lineage4.3.4.2.1 | None | ERR1336826 | Sensitive | La3;M.canetti | None | SAMEA2533757 | Sensitive | M.canetti | None | ERR1043163 | Other | La3;M.canetti | None | SRR1173770 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1049726 | Other | lineage4.1.2.1;lineage4.4.1.1 | None | SRR1049725 | Other | lineage4.1.2.1;lineage4.4.1 | None | SRR1140736 | Other | lineage4.1.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR3597004 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR7496471 | Sensitive | lineage4 | None |
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