Run ID: SRR19303773
Sample name:
Date: 03-04-2023 21:06:03
Number of reads: 466509
Percentage reads mapped: 15.28
Strain: lineage4.6.2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 1.0 |
lineage4.6.2.2 | Euro-American (Cameroon) | LAM10-CAM | RD726 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7395 | p.Ala32Thr | missense_variant | 0.12 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7704 | p.Thr135Ser | missense_variant | 0.2 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.18 |
mshA | 576104 | p.Arg253Gly | missense_variant | 0.4 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.33 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.12 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.11 |
rpoB | 763014 | p.Met1070Leu | missense_variant | 0.11 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.11 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.11 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.12 |
rpoB | 763038 | p.Thr1078Ala | missense_variant | 0.12 |
rpoC | 763052 | c.-318G>C | upstream_gene_variant | 0.11 |
rpoC | 763053 | c.-317T>C | upstream_gene_variant | 0.11 |
rpoC | 763094 | c.-276G>C | upstream_gene_variant | 0.11 |
rpoC | 763486 | c.117T>G | synonymous_variant | 0.25 |
rpoC | 763492 | c.123G>C | synonymous_variant | 0.23 |
rpoC | 763504 | c.135C>G | synonymous_variant | 0.2 |
rpoC | 763507 | c.138G>C | synonymous_variant | 0.19 |
rpoC | 763511 | p.Cys48Gly | missense_variant | 0.2 |
rpoC | 763517 | p.Lys50Gln | missense_variant | 0.19 |
rpoC | 763528 | c.159G>C | synonymous_variant | 0.17 |
rpoC | 763531 | c.162G>C | synonymous_variant | 0.19 |
rpoC | 763532 | p.Thr55Ser | missense_variant | 0.18 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.24 |
rpoC | 763550 | p.Tyr61Ala | missense_variant | 0.24 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.21 |
rpoC | 763589 | p.Ile74Val | missense_variant | 0.25 |
rpoC | 763609 | c.240C>G | synonymous_variant | 0.28 |
rpoC | 763614 | c.246_251delGACCCG | disruptive_inframe_deletion | 0.13 |
rpoC | 763622 | p.Ala85Thr | missense_variant | 0.13 |
rpoC | 763627 | c.258_259insAGCTCC | conservative_inframe_insertion | 0.17 |
rpoC | 763630 | c.261G>C | synonymous_variant | 0.18 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.18 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.36 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.29 |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.27 |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.27 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.25 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.14 |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.14 |
rpoC | 763708 | c.339G>T | synonymous_variant | 0.14 |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.14 |
rpoC | 763715 | p.Tyr116His | missense_variant | 0.11 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.11 |
rpoC | 763727 | p.Leu120Met | missense_variant | 0.12 |
rpoC | 764365 | c.996C>G | synonymous_variant | 0.29 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.36 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.33 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.47 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.31 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.47 |
rpoC | 764524 | c.1155C>T | synonymous_variant | 0.32 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.33 |
rpoC | 764530 | c.1161C>T | synonymous_variant | 0.33 |
rpoC | 764533 | c.1164C>T | synonymous_variant | 0.32 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.43 |
rpoC | 764537 | p.Pro390Val | missense_variant | 0.25 |
rpoC | 764540 | p.Val391Ile | missense_variant | 0.21 |
rpoC | 764545 | c.1176C>G | synonymous_variant | 0.43 |
rpoC | 764548 | c.1179G>C | synonymous_variant | 0.6 |
rpoC | 764549 | p.Pro394Thr | missense_variant | 0.55 |
rpoC | 764552 | p.Gly395Asn | missense_variant | 0.2 |
rpoC | 764557 | p.Asn396Lys | missense_variant | 0.19 |
rpoC | 764561 | p.Pro398Ala | missense_variant | 0.44 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.62 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.54 |
rpoC | 764576 | p.Ser403Ala | missense_variant | 0.19 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.62 |
rpoC | 764582 | p.Leu405Met | missense_variant | 0.62 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.69 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.69 |
rpoC | 764620 | c.1251G>C | synonymous_variant | 0.38 |
rpoC | 764621 | c.1252_1254delCTCinsTTG | synonymous_variant | 0.38 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.67 |
rpoC | 764635 | c.1266C>G | synonymous_variant | 0.29 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 0.32 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.53 |
rpoC | 764660 | p.Val431Ile | missense_variant | 0.19 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 0.2 |
rpoC | 764671 | c.1302G>C | synonymous_variant | 0.27 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 0.21 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.2 |
rpoC | 764683 | c.1314G>C | synonymous_variant | 0.21 |
rpoC | 764686 | c.1317C>T | synonymous_variant | 0.23 |
rpoC | 764689 | c.1320G>A | synonymous_variant | 0.21 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.23 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 0.23 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 0.25 |
rpoC | 764713 | c.1344G>T | synonymous_variant | 0.17 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.42 |
rpoC | 764719 | c.1350G>A | synonymous_variant | 0.2 |
rpoC | 766647 | p.Asp1093Val | missense_variant | 0.25 |
rpoC | 767179 | c.3810C>T | synonymous_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 778298 | c.-692C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.12 |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.17 |
rpsL | 781829 | c.270G>T | synonymous_variant | 0.12 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.13 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.14 |
fbiC | 1305004 | p.Glu692Gln | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472102 | n.257G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472113 | n.268T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472181 | n.336G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472494 | n.649A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472496 | n.651T>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472498 | n.653C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472507 | n.662C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472571 | n.726G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472606 | n.761C>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472645 | n.800G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472660 | n.815T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472666 | n.821G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472803 | n.958T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473109 | n.1264T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473269 | n.1424C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473349 | n.1504G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474383 | n.726G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474488 | n.831G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475752 | n.2095C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475775 | n.2118G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475776 | n.2119G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475874 | n.2217C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476165 | n.2508T>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476195 | n.2538C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476211 | n.2554G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.13 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102817 | p.Leu76Val | missense_variant | 0.17 |
katG | 2155389 | c.723C>G | synonymous_variant | 1.0 |
PPE35 | 2170062 | p.Ala184Gly | missense_variant | 0.67 |
Rv1979c | 2221746 | c.1416_1418dupCCG | disruptive_inframe_insertion | 1.0 |
Rv1979c | 2223166 | c.-2C>T | upstream_gene_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.33 |
Rv2752c | 3066244 | c.-53G>C | upstream_gene_variant | 0.14 |
thyX | 3067474 | p.Pro158Ala | missense_variant | 1.0 |
ald | 3087224 | p.Glu135Asp | missense_variant | 0.17 |
Rv3083 | 3448567 | p.His22Asp | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474054 | p.Phe16Leu | missense_variant | 0.25 |
fprA | 3474057 | p.Phe17Leu | missense_variant | 0.4 |
fprA | 3474967 | p.Ser321Ala | missense_variant | 0.2 |
Rv3236c | 3612571 | c.546C>T | synonymous_variant | 1.0 |
Rv3236c | 3612928 | c.189C>T | synonymous_variant | 0.22 |
alr | 3840843 | p.Leu193Pro | missense_variant | 0.11 |
clpC1 | 4040069 | c.636G>C | synonymous_variant | 0.16 |
embA | 4242550 | c.-683C>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244355 | p.Phe375Ile | missense_variant | 0.2 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.3 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.25 |
aftB | 4267272 | p.Lys522Arg | missense_variant | 1.0 |
ethR | 4326739 | c.-810G>C | upstream_gene_variant | 1.0 |
ethA | 4328004 | c.-531C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338205 | p.Val106Gly | missense_variant | 0.33 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |