Rv0668 - c.1179G>C
Drug resistance types
49 Sensitive
24 RR-TB
20 HR-TB
30 MDR-TB
16 Pre-XDR-TB
1 XDR-TB
58 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 61 |
| lineage2.2.1 | 28 |
| La3;lineage4 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.4.2 | 2 |
| lineage3.1.2.1;lineage4 | 1 |
| lineage4.2.1 | 5 |
| La1.2.BCG | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.4.1.1 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.2 | 3 |
| La1.8.1 | 2 |
| lineage3 | 7 |
| lineage4.6.5 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2.1 | 4 |
| lineage4.4 | 1 |
| lineage4.7 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.8 | 5 |
| La3;lineage4.9 | 8 |
| lineage4.1.1.3 | 2 |
| lineage4.8.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage4.1.2.1 | 8 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 3 |
| lineage3.1.1 | 2 |
| lineage2.2 | 2 |
| lineage4 | 2 |
| lineage4.6.2.2 | 1 |
| lineage3;lineage4 | 1 |
| lineage4.3.3 | 4 |
| lineage3.1.2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| La1.3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.1.2 | 3 |
| lineage4.6.1.2 | 4 |
| La1.4 | 1 |
| 1 | |
| lineage3;lineage4.9 | 1 |
| lineage4.1.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.2;La1.8.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2;lineage4 | 1 |
| lineage4.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 198 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283006 | RR-TB | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | DRR188519 | Other | lineage4.4.2 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR1181368 | Other | lineage4.9 | None | ERR11465514 | MDR-TB | lineage4.1.1.1 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797067 | Other | La1.8.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | SRR3675270 | Other | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR7645973 | Other | lineage4.3.4.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR7240476 | Other | La1.8.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR19303788 | Sensitive | lineage4.8 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR11342653 | MDR-TB | lineage2.2.1 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | ERR3275190 | Other | lineage3 | nl | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4821981 | Other | lineage4.1.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR4818522 | Other | lineage3 | None | ERR4814748 | Other | lineage4.8 | None | SRR9971046 | MDR-TB | lineage4.8 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR6045053 | Other | lineage4 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR1181256 | Other | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR6046878 | Other | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR3283031 | Other | La3;lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19303775 | Sensitive | lineage3 | None | ERR2446509 | Other | lineage3 | nl | SRR7069800 | Other | lineage3.1.2.1 | None | SRR6045347 | Other | lineage4.9 | None | ERR867554 | Other | lineage4.3.4.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1172717 | Sensitive | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR9971065 | RR-TB | lineage2.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR4821408 | Sensitive | lineage4.1.2 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4769452 | Other | lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR1180446 | Other | lineage4.9 | None | SRR11342655 | MDR-TB | lineage2.2.1 | None | ERR4817060 | Other | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR867573 | Other | lineage4.9 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1181349 | Sensitive | lineage4 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR4819864 | RR-TB | lineage1.1.3.1 | None | SRR11342636 | MDR-TB | lineage4.3.3 | None | ERR4769457 | Other | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4820959 | Other | lineage4.1.2.1 | None | ERR3283032 | Other | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR4815471 | HR-TB | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR4828962 | Sensitive | lineage4.1.4 | it | ERR867525 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
