TB-Profiler result

Run: ERR4818522

Summary

Run ID: ERR4818522

Sample name:

Date: 01-04-2023 15:36:20

Number of reads: 387281

Percentage reads mapped: 27.45

Strain: lineage3

Drug-resistance: Pre-XDR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7572 p.Ser91Ala missense_variant 0.29 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761127 p.Ser441Ala missense_variant 0.4 rifampicin
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.79 streptomycin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.2 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7559 c.258G>C synonymous_variant 0.33
gyrA 7571 c.270G>C synonymous_variant 0.29
gyrA 7584 p.Ser95Ala missense_variant 0.29
gyrA 7589 c.288G>C synonymous_variant 0.25
gyrA 7591 p.Val97Ala missense_variant 0.29
gyrA 7596 p.Met99Leu missense_variant 0.25
gyrA 7600 p.Ala100Val missense_variant 0.25
gyrA 7625 c.324G>C synonymous_variant 0.29
gyrA 7628 c.327G>C synonymous_variant 0.29
gyrA 7631 c.330G>C synonymous_variant 0.29
gyrA 7633 p.Asp111Ala missense_variant 0.29
gyrA 7643 c.342C>T synonymous_variant 0.29
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9596 c.2295G>T synonymous_variant 1.0
fgd1 491293 p.Pro171Ser missense_variant 0.22
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759746 c.-61C>T upstream_gene_variant 1.0
rpoB 761030 c.1224G>C synonymous_variant 0.22
rpoB 761037 c.1231T>C synonymous_variant 0.22
rpoB 761051 c.1245G>C synonymous_variant 0.2
rpoB 761054 c.1248G>C synonymous_variant 0.2
rpoB 761057 c.1251G>C synonymous_variant 0.2
rpoB 761060 c.1254C>G synonymous_variant 0.3
rpoB 761084 c.1278C>A synonymous_variant 0.33
rpoB 761088 c.1282_1283delAGinsTC synonymous_variant 0.33
rpoB 761096 c.1290G>C synonymous_variant 0.4
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.3
rpoB 761102 c.1296A>G synonymous_variant 0.4
rpoB 761133 c.1327T>C synonymous_variant 0.4
rpoB 761150 c.1344A>C synonymous_variant 0.5
rpoB 761159 c.1353G>C synonymous_variant 0.5
rpoB 762024 p.Val740Ile missense_variant 0.13
rpoB 762050 c.2244G>A synonymous_variant 0.14
rpoB 762051 p.His749Tyr missense_variant 0.21
rpoB 762057 p.Ile751Val missense_variant 0.21
rpoB 762062 c.2256T>C synonymous_variant 0.2
rpoB 762065 c.2259T>C synonymous_variant 0.2
rpoB 762071 p.Asp755Glu missense_variant 0.18
rpoB 762080 c.2274G>C synonymous_variant 0.2
rpoB 762085 p.Ala760Glu missense_variant 0.19
rpoB 762089 c.2283G>A synonymous_variant 0.19
rpoB 762110 c.2304G>C synonymous_variant 0.14
rpoB 762114 p.Ile770Val missense_variant 0.15
rpoB 762185 c.2379G>C synonymous_variant 0.22
rpoB 762194 c.2388G>C synonymous_variant 0.36
rpoB 762200 c.2394C>T synonymous_variant 0.5
rpoB 762218 c.2412T>C synonymous_variant 0.46
rpoB 762233 c.2427G>C synonymous_variant 0.58
rpoB 762234 p.Pro810Ser missense_variant 0.62
rpoB 762239 c.2433G>A synonymous_variant 0.17
rpoB 762245 c.2439G>C synonymous_variant 0.5
rpoB 762248 c.2442G>C synonymous_variant 0.31
rpoB 762254 c.2448T>C synonymous_variant 0.53
rpoB 762266 c.2460T>C synonymous_variant 0.12
rpoB 762275 c.2469C>T synonymous_variant 0.24
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoB 762879 p.Met1025Leu missense_variant 0.15
rpoC 762899 c.-471G>C upstream_gene_variant 0.14
rpoC 762926 c.-444C>G upstream_gene_variant 0.11
rpoC 762929 c.-441G>C upstream_gene_variant 0.12
rpoC 763028 c.-342T>C upstream_gene_variant 0.25
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoB 763038 p.Thr1078Ala missense_variant 0.3
rpoC 763043 c.-327G>C upstream_gene_variant 0.33
rpoC 763053 c.-317T>C upstream_gene_variant 0.5
rpoC 763067 c.-303C>G upstream_gene_variant 0.36
rpoC 763070 c.-300T>C upstream_gene_variant 0.5
rpoB 763077 p.Val1091Thr missense_variant 0.43
rpoC 763103 c.-267G>C upstream_gene_variant 0.46
rpoC 763109 c.-261C>T upstream_gene_variant 0.36
rpoC 763115 c.-255T>C upstream_gene_variant 0.43
rpoB 763119 p.Asn1105Asp missense_variant 0.43
rpoC 763127 c.-243G>C upstream_gene_variant 0.33
rpoC 763133 c.-237G>C upstream_gene_variant 0.38
rpoC 763675 c.306C>G synonymous_variant 0.31
rpoC 763708 c.339G>C synonymous_variant 0.53
rpoC 763714 c.345G>C synonymous_variant 0.53
rpoC 763717 c.348T>C synonymous_variant 0.53
rpoC 763718 p.Leu117Val missense_variant 0.53
rpoC 763723 c.354G>C synonymous_variant 0.53
rpoC 763724 p.Asp119Asn missense_variant 0.53
rpoC 763729 c.360G>C synonymous_variant 0.56
rpoC 763732 c.363C>G synonymous_variant 0.53
rpoC 763735 c.366G>C synonymous_variant 0.53
rpoC 763744 c.375G>C synonymous_variant 0.53
rpoC 763751 p.Ile128Val missense_variant 0.53
rpoC 763772 p.Val135Met missense_variant 0.47
rpoC 763781 p.Ser138Glu missense_variant 0.38
rpoC 764181 p.Asp271Gly missense_variant 0.83
rpoC 764485 c.1116G>C synonymous_variant 0.29
rpoC 764491 c.1122G>T synonymous_variant 0.29
rpoC 764497 c.1128A>G synonymous_variant 0.33
rpoC 764503 c.1134G>T synonymous_variant 0.38
rpoC 764509 c.1140G>C synonymous_variant 0.22
rpoC 764512 c.1143G>C synonymous_variant 0.25
rpoC 764521 c.1152T>C synonymous_variant 0.43
rpoC 764530 c.1161C>T synonymous_variant 0.27
rpoC 764536 c.1167G>C synonymous_variant 0.46
rpoC 764539 c.1170C>G synonymous_variant 0.14
rpoC 764543 p.Thr392Ala missense_variant 0.36
rpoC 764548 c.1179G>C synonymous_variant 0.54
rpoC 764549 p.Pro394Val missense_variant 0.14
rpoC 764566 c.1197C>G synonymous_variant 0.36
rpoC 764572 c.1203G>C synonymous_variant 0.18
rpoC 764573 p.Leu402Ile missense_variant 0.36
rpoC 764578 c.1209C>G synonymous_variant 0.36
rpoC 764581 c.1212T>C synonymous_variant 0.55
rpoC 764582 p.Leu405Met missense_variant 0.55
rpoC 764593 c.1224C>T synonymous_variant 0.31
rpoC 764602 c.1233C>T synonymous_variant 0.36
rpoC 764605 c.1236G>T synonymous_variant 0.44
rpoC 764611 c.1242G>T synonymous_variant 0.5
rpoC 764626 c.1257C>T synonymous_variant 0.5
rpoC 764632 c.1263T>C synonymous_variant 0.5
rpoC 764647 c.1278C>T synonymous_variant 0.38
rpoC 764650 c.1281G>T synonymous_variant 0.38
rpoC 764653 c.1284G>C synonymous_variant 0.38
rpoC 764656 c.1287C>T synonymous_variant 0.5
rpoC 764662 c.1293G>C synonymous_variant 0.55
rpoC 764677 c.1308C>G synonymous_variant 0.45
rpoC 764678 p.Lys437Gln missense_variant 0.45
rpoC 764706 p.Leu446Gln missense_variant 0.5
rpoC 764713 c.1344G>C synonymous_variant 0.56
rpoC 764731 c.1362G>C synonymous_variant 0.57
rpoC 764737 c.1368G>C synonymous_variant 0.57
rpoC 764746 c.1377G>C synonymous_variant 0.5
rpoC 764752 c.1383G>T synonymous_variant 0.4
rpoC 765544 c.2175C>G synonymous_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.38
rrs 1472078 n.233C>T non_coding_transcript_exon_variant 0.44
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.26
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.85
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.61
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.69
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.62
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.96
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.13
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.69
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.75
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.22
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.75
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472258 n.413A>G non_coding_transcript_exon_variant 0.15
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.17
rrs 1472285 n.440A>G non_coding_transcript_exon_variant 1.0
rrs 1472338 n.493A>G non_coding_transcript_exon_variant 0.6
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.88
rrs 1472379 n.534T>C non_coding_transcript_exon_variant 0.5
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.38
rrs 1472396 n.551A>T non_coding_transcript_exon_variant 0.43
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.5
rrs 1472412 n.567A>G non_coding_transcript_exon_variant 0.5
rrs 1472416 n.571C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.6
rrs 1472426 n.581T>G non_coding_transcript_exon_variant 0.4
rrs 1472427 n.582T>G non_coding_transcript_exon_variant 0.5
rrs 1472435 n.590T>C non_coding_transcript_exon_variant 1.0
rrs 1472476 n.631A>G non_coding_transcript_exon_variant 1.0
rrs 1472494 n.649A>G non_coding_transcript_exon_variant 1.0
rrs 1472498 n.653C>T non_coding_transcript_exon_variant 1.0
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.88
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.85
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.85
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.76
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.76
rrs 1472544 n.699C>A non_coding_transcript_exon_variant 0.78
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.76
rrs 1472549 n.704G>A non_coding_transcript_exon_variant 0.16
rrs 1472566 n.721G>A non_coding_transcript_exon_variant 0.71
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.78
rrs 1472579 n.734G>C non_coding_transcript_exon_variant 0.72
rrs 1472580 n.735C>T non_coding_transcript_exon_variant 0.62
rrs 1472581 n.736A>C non_coding_transcript_exon_variant 0.96
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.99
rrs 1472584 n.739A>T non_coding_transcript_exon_variant 0.21
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.72
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.72
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.7
rrs 1472647 n.802C>T non_coding_transcript_exon_variant 0.5
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 1.0
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 1.0
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.18
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.8
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.2
rrs 1472670 n.825G>T non_coding_transcript_exon_variant 0.33
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 1.0
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 1.0
rrs 1472677 n.832C>T non_coding_transcript_exon_variant 1.0
rrs 1472681 n.837_838delTT non_coding_transcript_exon_variant 1.0
rrs 1472687 n.842_843insC non_coding_transcript_exon_variant 1.0
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 1.0
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.41
rrs 1472707 n.862A>T non_coding_transcript_exon_variant 0.19
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.74
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.26
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.74
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.76
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.76
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.76
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.24
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.74
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.76
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.92
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.29
rrs 1472827 n.982G>T non_coding_transcript_exon_variant 0.42
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 1.0
rrs 1472840 n.995A>G non_coding_transcript_exon_variant 1.0
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 1.0
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.18
rrs 1472954 n.1109T>C non_coding_transcript_exon_variant 0.7
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.16
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.92
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.92
rrs 1472973 n.1128A>G non_coding_transcript_exon_variant 0.96
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.9
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 0.18
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.14
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.95
rrs 1472992 n.1147A>G non_coding_transcript_exon_variant 0.74
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.72
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 1.0
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.93
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.98
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.93
rrs 1473080 n.1235C>T non_coding_transcript_exon_variant 0.77
rrs 1473081 n.1236C>T non_coding_transcript_exon_variant 0.8
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.89
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.95
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.89
rrs 1473101 n.1256C>T non_coding_transcript_exon_variant 0.44
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.47
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.94
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.94
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.89
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.12
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.84
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.83
rrs 1473130 n.1285G>A non_coding_transcript_exon_variant 0.83
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.94
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.96
rrs 1473172 n.1327T>G non_coding_transcript_exon_variant 0.73
rrs 1473173 n.1328C>T non_coding_transcript_exon_variant 0.75
rrs 1473192 n.1347A>G non_coding_transcript_exon_variant 0.17
rrs 1473199 n.1356delA non_coding_transcript_exon_variant 0.16
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.17
rrs 1473221 n.1376C>T non_coding_transcript_exon_variant 0.67
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.93
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.92
rrs 1473276 n.1431A>C non_coding_transcript_exon_variant 0.94
rrs 1473277 n.1432G>A non_coding_transcript_exon_variant 0.79
rrs 1473288 n.1443C>G non_coding_transcript_exon_variant 0.71
rrs 1473289 n.1444_1445insTTTTG non_coding_transcript_exon_variant 0.8
rrs 1473293 n.1449delA non_coding_transcript_exon_variant 0.67
rrs 1473300 n.1455C>T non_coding_transcript_exon_variant 0.71
rrs 1473301 n.1456T>G non_coding_transcript_exon_variant 0.83
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.14
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.86
rrl 1474163 n.506C>T non_coding_transcript_exon_variant 1.0
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 1.0
rrl 1474197 n.540C>T non_coding_transcript_exon_variant 1.0
rrl 1474199 n.542G>C non_coding_transcript_exon_variant 1.0
rrl 1474200 n.545delT non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474467 n.810A>G non_coding_transcript_exon_variant 1.0
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.75
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.75
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.8
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.8
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 1.0
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.8
rrl 1474527 n.870T>C non_coding_transcript_exon_variant 0.5
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.33
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.33
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 1.0
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.33
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.33
rrl 1474542 n.885A>G non_coding_transcript_exon_variant 0.5
rrl 1474784 n.1127C>T non_coding_transcript_exon_variant 0.67
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474798 n.1141C>G non_coding_transcript_exon_variant 0.67
rrl 1474806 n.1149A>G non_coding_transcript_exon_variant 0.67
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474819 n.1162T>G non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.67
rrl 1474824 n.1167A>C non_coding_transcript_exon_variant 1.0
rrl 1474825 n.1168G>A non_coding_transcript_exon_variant 0.67
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474837 n.1180A>G non_coding_transcript_exon_variant 0.5
rrl 1474864 n.1207C>T non_coding_transcript_exon_variant 1.0
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 1.0
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 1.0
rrl 1475059 n.1403_1404insTA non_coding_transcript_exon_variant 1.0
rrl 1475062 n.1405A>T non_coding_transcript_exon_variant 1.0
rrl 1475065 n.1409_1411delCAA non_coding_transcript_exon_variant 1.0
rrl 1475080 n.1425_1426delCC non_coding_transcript_exon_variant 1.0
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 1.0
rrl 1475104 n.1447T>A non_coding_transcript_exon_variant 1.0
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 1.0
rrl 1475715 n.2058G>C non_coding_transcript_exon_variant 0.75
rrl 1475751 n.2094C>A non_coding_transcript_exon_variant 0.85
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.23
rrl 1475756 n.2099T>C non_coding_transcript_exon_variant 0.83
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.77
rrl 1475767 n.2110_2111insT non_coding_transcript_exon_variant 0.73
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.92
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.22
rrl 1475883 n.2226A>C non_coding_transcript_exon_variant 0.86
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.89
rrl 1475896 n.2239A>G non_coding_transcript_exon_variant 0.75
rrl 1475897 n.2240T>C non_coding_transcript_exon_variant 0.62
rrl 1475898 n.2241A>G non_coding_transcript_exon_variant 0.71
rrl 1475899 n.2242G>A non_coding_transcript_exon_variant 0.71
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.86
rrl 1475916 n.2259C>G non_coding_transcript_exon_variant 0.86
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.86
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.71
rrl 1475945 n.2288C>A non_coding_transcript_exon_variant 0.67
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.67
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.8
rrl 1476179 n.2522C>T non_coding_transcript_exon_variant 0.83
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 0.86
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 0.86
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 0.86
rrl 1476204 n.2547C>T non_coding_transcript_exon_variant 0.71
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.75
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476229 n.2572C>T non_coding_transcript_exon_variant 0.4
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.4
rrl 1476250 n.2593C>G non_coding_transcript_exon_variant 0.4
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.5
rrl 1476257 n.2600G>C non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.75
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.18
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.17
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.8
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.16
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.17
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.83
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.14
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.15
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.93
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.78
rrl 1476429 n.2772A>T non_coding_transcript_exon_variant 0.9
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.9
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.76
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.67
rrl 1476513 n.2856G>T non_coding_transcript_exon_variant 0.22
rrl 1476515 n.2858C>T non_coding_transcript_exon_variant 0.4
rrl 1476528 n.2871A>G non_coding_transcript_exon_variant 0.2
rrl 1476530 n.2873C>T non_coding_transcript_exon_variant 0.3
rrl 1476535 n.2878G>A non_coding_transcript_exon_variant 0.22
rrl 1476536 n.2879G>A non_coding_transcript_exon_variant 0.71
rrl 1476538 n.2881A>G non_coding_transcript_exon_variant 0.33
rrl 1476539 n.2882A>G non_coding_transcript_exon_variant 0.67
rrl 1476540 n.2883C>G non_coding_transcript_exon_variant 0.56
rrl 1476547 n.2890C>T non_coding_transcript_exon_variant 0.3
rrl 1476567 n.2910C>T non_coding_transcript_exon_variant 0.33
rrl 1476573 n.2916A>T non_coding_transcript_exon_variant 0.22
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.67
rrl 1476585 n.2928A>G non_coding_transcript_exon_variant 0.67
rrl 1476594 n.2937C>A non_coding_transcript_exon_variant 0.33
rrl 1476603 n.2946G>T non_coding_transcript_exon_variant 0.33
rrl 1476607 n.2950C>T non_coding_transcript_exon_variant 0.5
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.75
rrl 1476614 n.2957A>T non_coding_transcript_exon_variant 0.75
rrl 1476616 n.2959A>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.67
rrl 1476629 n.2972C>A non_coding_transcript_exon_variant 0.75
rrl 1476630 n.2973A>G non_coding_transcript_exon_variant 0.5
rpsA 1834228 c.687C>T synonymous_variant 0.29
rpsA 1834234 c.693G>C synonymous_variant 0.38
rpsA 1834240 c.699T>C synonymous_variant 0.45
rpsA 1834246 c.705G>T synonymous_variant 0.6
rpsA 1834249 c.708T>C synonymous_variant 0.73
rpsA 1834261 c.720A>G synonymous_variant 0.8
rpsA 1834264 c.723G>C synonymous_variant 0.8
rpsA 1834285 c.744G>C synonymous_variant 0.12
rpsA 1834294 c.753G>C synonymous_variant 0.71
rpsA 1834298 p.Gln253Glu missense_variant 0.71
rpsA 1834303 c.762T>C synonymous_variant 0.15
rpsA 1834306 c.765T>C synonymous_variant 0.64
rpsA 1834307 p.Asp256Gln missense_variant 0.58
rpsA 1834312 c.771G>A synonymous_variant 0.54
rpsA 1834318 c.777C>G synonymous_variant 0.14
rpsA 1834321 c.780C>T synonymous_variant 0.12
rpsA 1834327 c.786G>T synonymous_variant 0.67
rpsA 1834330 c.789C>G synonymous_variant 0.13
rpsA 1834345 c.804C>T synonymous_variant 0.5
rpsA 1834348 c.807T>C synonymous_variant 0.45
rpsA 1834354 c.813G>C synonymous_variant 0.33
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
PPE35 2170769 c.-157C>T upstream_gene_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
Rv2752c 3065743 p.Thr150Asn missense_variant 0.29
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3474227 p.Pro74His missense_variant 0.13
clpC1 4039994 p.Glu237Asp missense_variant 0.18
clpC1 4040009 p.Ala232Arg missense_variant 0.14
clpC1 4040015 c.690G>C synonymous_variant 0.25
clpC1 4040018 c.687G>A synonymous_variant 0.15
clpC1 4040021 c.684A>T synonymous_variant 0.15
clpC1 4040024 c.681A>G synonymous_variant 0.31
clpC1 4040027 c.678C>T synonymous_variant 0.15
clpC1 4040033 c.672G>C synonymous_variant 0.15
clpC1 4040039 c.666G>A synonymous_variant 0.14
clpC1 4040042 c.663C>T synonymous_variant 0.29
clpC1 4040057 c.648C>T synonymous_variant 0.17
clpC1 4040066 c.639G>C synonymous_variant 0.17
embC 4241661 c.1804delG frameshift_variant 0.33
embC 4242075 p.Arg738Gln missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0