| lineage | Count |
|---|---|
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.1.1.3 | 4 |
| lineage2.2.1 | 30 |
| lineage4.9 | 204 |
| lineage1.2.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3.1.3 | 2 |
| lineage4.3.4.2.1 | 4 |
| lineage4.1 | 1 |
| lineage4.1.2.1 | 10 |
| lineage4.3.3 | 6 |
| lineage4.4.1.1 | 4 |
| lineage4.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.6.2.2 | 3 |
| lineage4.2.1 | 4 |
| lineage4.8 | 9 |
| lineage1.1.3.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| lineage3.1.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage5.1.4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La1.8.1 | 3 |
| lineage2.2.2 | 2 |
| lineage4 | 5 |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage5 | 1 |
| lineage3.1.2.1 | 2 |
| lineage1.1.2 | 2 |
| lineage4.3.4.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.8.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage3 | 7 |
| La1.2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2 | 2 |
| lineage2;lineage4 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 2 |
| lineage4.4.1.1.1 | 3 |
| 2 | |
| lineage3;lineage4 | 2 |
| lineage5.1.2 | 1 |
| La1.3 | 1 |
| lineage1 | 1 |
| lineage4.3.3;lineage4.9 | 2 |
| lineage4.1.1.1 | 2 |
| La1.4 | 1 |
| lineage3;lineage4.9 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| spoligotype | Count |
|---|---|
| None | 369 |
| ID | Drug resistance | Lineage | Country iso2 | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR4769433 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4815502 | Other | lineage4.1 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4820043 | Sensitive | lineage4.1.2.1 | None | ERR4816610 | Other | lineage4.3.3 | None | ERR4819096 | Other | lineage4.4.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4821334 | Other | lineage4.1.3 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4815709 | Sensitive | lineage4.1.2.1 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4819772 | Other | lineage1.1.3.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6046802 | Other | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR978767 | RR-TB | lineage4.8 | None | ERR978766 | RR-TB | lineage4.8 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR4812155 | Other | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4820410 | RR-TB | lineage3.1.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1791747 | Other | La1.8.1 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816967 | Other | lineage5 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR11662694 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR751326 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR4769493 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR1023509 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR7851312 | Other | La1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4818522 | Other | lineage3 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR6046737 | Other | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR7645928 | Other | lineage4.7 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1181403 | Other | lineage4.9 | None | ERR978765 | RR-TB | lineage4.8 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4819305 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4818393 | RR-TB | lineage3;lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | SRR1173515 | Sensitive | lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818126 | Other | lineage1 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR6045371 | Other | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR11342636 | MDR-TB | lineage4.3.3;lineage4.9 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR1196545 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | SRR1181349 | Sensitive | lineage4 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR7236330 | Other | La1.8.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971113 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1173740 | Other | lineage3;lineage4 | None | ERR363447 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR4820833 | Other | lineage3;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR10796598 | Other | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR4818851 | RR-TB | lineage4.4.1.1 | None | SRR1173281 | Other | lineage3 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR11342693 | MDR-TB | lineage4.8.1 | None | SRR6044952 | Other | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None |
|---|