Run ID: ERR4817998
Sample name:
Date: 2024-04-16T09:56:10.043829
Number of reads: 3041318
Percentage reads mapped: 74.14
Median coverage: 64.0
Strain: lineage3
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage3 | East-African-Indian | RD750 | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | rrs | n.888G>A | Uncertain significance | Mutation from literature |
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.48 | streptomycin | Uncertain significance | Mutation from literature |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 6676 | c.-626T>G | upstream_gene_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7129 | c.-173T>G | upstream_gene_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7136 | c.-166T>C | upstream_gene_variant | 0.21 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7144 | c.-158A>G | upstream_gene_variant | 0.26 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7150 | c.-152G>A | upstream_gene_variant | 0.28 | levofloxacin | |
moxifloxacin | ||||||
gyrB | 7153 | c.1914G>C | synonymous_variant | 0.29 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrB | 7159 | c.1920C>T | synonymous_variant | 0.3 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7162 | c.-140C>G | upstream_gene_variant | 0.29 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7168 | c.-134C>G | upstream_gene_variant | 0.32 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7178 | c.-124T>C | upstream_gene_variant | 0.27 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7355 | c.54T>A | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7391 | c.90C>T | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7394 | c.93T>C | synonymous_variant | 0.15 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 7397 | c.96G>C | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7406 | c.105G>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7412 | c.111C>G | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7421 | c.120G>T | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7439 | c.138C>T | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7457 | c.156T>C | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7463 | c.162G>C | synonymous_variant | 0.14 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7466 | c.165G>C | synonymous_variant | 0.12 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7472 | c.171T>C | synonymous_variant | 0.11 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | ||||||
gyrA | 7475 | c.174A>G | synonymous_variant | 0.12 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7480 | p.Phe60Tyr | missense_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7484 | c.183T>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7490 | c.189C>G | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7496 | c.195C>G | synonymous_variant | 0.21 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7499 | c.198G>C | synonymous_variant | 0.22 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7523 | c.222C>G | synonymous_variant | 0.2 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7526 | c.225G>C | synonymous_variant | 0.19 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7532 | c.231T>G | synonymous_variant | 0.2 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7547 | c.246C>T | synonymous_variant | 0.23 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7559 | c.258G>A | synonymous_variant | 0.24 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 7571 | c.270G>C | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7574 | c.273G>C | synonymous_variant | 0.25 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
gyrA | 7601 | c.300C>G | synonymous_variant | 0.14 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.15 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8924 | c.1623C>T | synonymous_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8945 | c.1644G>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8946 | c.1645_1647delTTGinsCC | frameshift_variant&missense_variant | 0.17 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8967 | p.Ala556Lys | missense_variant | 0.2 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8993 | c.1692C>T | synonymous_variant | 0.16 | levofloxacin | Not assoc w R - Interim |
moxifloxacin | Not assoc w R - Interim | |||||
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.19 | levofloxacin | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
gyrA | 9018 | p.Gln573Lys | missense_variant | 0.18 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9023 | c.1722A>T | synonymous_variant | 0.16 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9026 | c.1725G>C | synonymous_variant | 0.13 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9044 | c.1743C>G | synonymous_variant | 0.15 | levofloxacin | |
moxifloxacin | ||||||
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 | levofloxacin | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 | clofazimine | Not assoc w R |
pretomanid | ||||||
delamanid | Not assoc w R - Interim | |||||
Rv0565c | 657081 | c.390G>A | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
hadA | 731738 | c.-192G>C | upstream_gene_variant | 0.12 | isoniazid | |
hadA | 731742 | c.-188A>G | upstream_gene_variant | 0.12 | isoniazid | |
hadA | 731747 | c.-183T>C | upstream_gene_variant | 0.13 | isoniazid | |
hadA | 731756 | c.-174C>T | upstream_gene_variant | 0.14 | isoniazid | |
hadA | 731760 | c.-170_-169delGTinsAC | upstream_gene_variant | 0.14 | isoniazid | |
hadA | 731789 | c.-141A>G | upstream_gene_variant | 0.16 | isoniazid | |
hadA | 731798 | c.-132C>G | upstream_gene_variant | 0.18 | isoniazid | |
hadA | 731801 | c.-129C>T | upstream_gene_variant | 0.18 | isoniazid | |
hadA | 731810 | c.-120G>T | upstream_gene_variant | 0.18 | isoniazid | |
hadA | 731822 | c.-108G>A | upstream_gene_variant | 0.12 | isoniazid | |
nusG | 734415 | c.162C>G | synonymous_variant | 0.15 | rifampicin | |
nusG | 734421 | c.168A>C | synonymous_variant | 0.16 | rifampicin | |
nusG | 734424 | c.171G>T | synonymous_variant | 0.22 | rifampicin | |
nusG | 734445 | c.192C>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
nusG | 734452 | c.199_201delGAAinsCG | frameshift_variant&missense_variant | 0.29 | rifampicin | |
nusG | 734460 | c.207G>T | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
nusG | 734472 | c.219T>G | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
nusG | 734475 | c.222T>C | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
nusG | 734497 | c.244_246delGTGinsAC | frameshift_variant&missense_variant | 0.33 | rifampicin | |
nusG | 734532 | c.279A>G | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
nusG | 734541 | c.288A>G | synonymous_variant | 0.31 | rifampicin | Not assoc w R - Interim |
nusG | 734544 | c.291C>T | synonymous_variant | 0.33 | rifampicin | |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 | rifampicin | Not assoc w R |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.2 | rifampicin | |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 760244 | c.438G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.27 | rifampicin | Not assoc w R - Interim |
rpoB | 760433 | c.627C>T | synonymous_variant | 0.31 | rifampicin | |
rpoB | 760454 | c.648C>G | synonymous_variant | 0.26 | rifampicin | |
rpoB | 760457 | c.651C>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoB | 760469 | c.663C>T | synonymous_variant | 0.21 | rifampicin | |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 760478 | c.672C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 760668 | c.862_864delACGinsGC | frameshift_variant&missense_variant | 0.14 | rifampicin | |
rpoB | 760674 | c.868T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 760683 | c.877T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 760862 | c.1056G>C | synonymous_variant | 0.11 | rifampicin | Not assoc w R - Interim |
rpoB | 760869 | p.Val355Leu | missense_variant | 0.12 | rifampicin | |
rpoB | 760910 | c.1104C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 760916 | c.1110C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 761084 | c.1278C>A | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.12 | rifampicin | |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 761171 | c.1365C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761178 | c.1372_1374delTCAinsAC | frameshift_variant&missense_variant | 0.16 | rifampicin | |
rpoB | 761186 | p.Glu460Asp | missense_variant | 0.16 | rifampicin | Uncertain significance |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoB | 761198 | c.1392G>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 761219 | c.1413G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.11 | rifampicin | Not assoc w R - Interim |
rpoB | 761555 | c.1749G>C | synonymous_variant | 0.11 | rifampicin | Not assoc w R - Interim |
rpoB | 761558 | c.1752C>G | synonymous_variant | 0.11 | rifampicin | Not assoc w R - Interim |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 761612 | c.1806G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.17 | rifampicin | |
rpoB | 761666 | c.1860G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 761669 | c.1863C>T | synonymous_variant | 0.15 | rifampicin | |
rpoB | 761675 | c.1869G>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761687 | c.1881C>T | synonymous_variant | 0.16 | rifampicin | |
rpoB | 761690 | c.1884G>C | synonymous_variant | 0.13 | rifampicin | |
rpoB | 761693 | c.1887G>C | synonymous_variant | 0.14 | rifampicin | |
rpoB | 761750 | c.1944G>C | synonymous_variant | 0.12 | rifampicin | |
rpoB | 761760 | p.Ile652Val | missense_variant | 0.12 | rifampicin | |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 762284 | c.2478G>T | synonymous_variant | 0.2 | rifampicin | |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoB | 762296 | c.2490G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoB | 762299 | c.2493G>C | synonymous_variant | 0.21 | rifampicin | |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoB | 762434 | c.2628T>G | synonymous_variant | 0.91 | rifampicin | Not assoc w R |
rpoC | 762509 | c.-861T>G | upstream_gene_variant | 0.13 | rifampicin | |
rpoB | 762510 | p.Ala902Pro | missense_variant | 0.13 | rifampicin | Uncertain significance |
rpoB | 762515 | c.2709C>T | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.18 | rifampicin | Uncertain significance |
rpoB | 762894 | c.3088C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 762899 | c.3093G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 762911 | c.-459C>T | upstream_gene_variant | 0.19 | rifampicin | |
rpoB | 762917 | c.3111C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoB | 762920 | c.3114C>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 762923 | c.3117C>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 762959 | c.3153G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoB | 762962 | c.3156C>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.16 | rifampicin | |
rpoB | 762989 | c.3183G>A | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoB | 762995 | c.3189G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoB | 763031 | c.3225T>C | synonymous_variant | 0.77 | rifampicin | Not assoc w R |
rpoB | 763031 | c.3225T>G | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 763034 | c.-336C>A | upstream_gene_variant | 0.24 | rifampicin | |
rpoB | 763040 | c.3234C>G | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoB | 763070 | c.3264T>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 763076 | c.-294C>A | upstream_gene_variant | 0.23 | rifampicin | |
rpoB | 763082 | c.3276C>T | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 763088 | c.3282C>G | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoB | 763094 | c.3288G>C | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoB | 763115 | c.3309T>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 763127 | c.3321G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoB | 763136 | c.3330C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763142 | c.-228C>G | upstream_gene_variant | 0.14 | rifampicin | |
rpoB | 763157 | c.3351G>T | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763531 | c.162G>T | synonymous_variant | 0.32 | rifampicin | Not assoc w R - Interim |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.33 | rifampicin | Not assoc w R - Interim |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.34 | rifampicin | Not assoc w R - Interim |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 763666 | c.297G>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763669 | c.300C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 763699 | c.330G>T | synonymous_variant | 0.17 | rifampicin | |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 763708 | c.339G>T | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763711 | c.342G>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 763714 | c.345G>A | synonymous_variant | 0.15 | rifampicin | |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.15 | rifampicin | |
rpoC | 764353 | c.984G>T | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764371 | c.1002G>T | synonymous_variant | 0.22 | rifampicin | |
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764392 | c.1023C>T | synonymous_variant | 0.23 | rifampicin | |
rpoC | 764405 | c.1036_1038delAGGinsCC | frameshift_variant&missense_variant | 0.22 | rifampicin | |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 764435 | c.1066_1068delAGGinsCA | frameshift_variant&missense_variant | 0.15 | rifampicin | |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.12 | rifampicin | |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764635 | c.1266C>T | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764713 | c.1344G>T | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764810 | c.1441_1443delCCCinsGT | frameshift_variant&missense_variant | 0.2 | rifampicin | |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.28 | rifampicin | Not assoc w R - Interim |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764869 | c.1500C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 764875 | c.1506C>A | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764878 | c.1509C>G | synonymous_variant | 0.25 | rifampicin | |
rpoC | 764887 | c.1518G>C | synonymous_variant | 0.26 | rifampicin | Not assoc w R - Interim |
rpoC | 764888 | c.1519T>C | synonymous_variant | 0.25 | rifampicin | Not assoc w R - Interim |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.24 | rifampicin | |
rpoC | 764912 | p.Met515Gln | missense_variant | 0.24 | rifampicin | Uncertain significance |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.22 | rifampicin | Not assoc w R - Interim |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 765047 | c.1678T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 765055 | c.1686C>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoC | 765073 | c.1704G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 765076 | c.1707A>G | synonymous_variant | 0.13 | rifampicin | |
rpoC | 765079 | c.1710T>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 765082 | c.1713G>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 765085 | c.1716T>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765089 | c.1720T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoC | 765103 | c.1734G>T | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765394 | c.2025G>A | synonymous_variant | 0.15 | rifampicin | |
rpoC | 765403 | c.2034G>C | synonymous_variant | 0.14 | rifampicin | |
rpoC | 765405 | p.Leu679His | missense_variant | 0.14 | rifampicin | Uncertain significance |
rpoC | 765409 | c.2040T>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 765412 | c.2043T>C | synonymous_variant | 0.16 | rifampicin | |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 765449 | c.2080_2082delGCCinsTG | frameshift_variant&missense_variant | 0.17 | rifampicin | |
rpoC | 765454 | c.2085C>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoC | 765469 | c.2100G>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoC | 765478 | c.2109T>G | synonymous_variant | 0.12 | rifampicin | |
rpoC | 765480 | p.Tyr704Phe | missense_variant | 0.12 | rifampicin | Uncertain significance |
rpoC | 765496 | c.2127C>T | synonymous_variant | 0.13 | rifampicin | |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 765871 | c.2502T>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.12 | rifampicin | |
rpoC | 766618 | c.3249G>T | synonymous_variant | 0.11 | rifampicin | |
rpoC | 766624 | c.3255G>C | synonymous_variant | 0.11 | rifampicin | |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.11 | rifampicin | |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.24 | rifampicin | Not assoc w R - Interim |
rpoC | 767008 | c.3639G>A | synonymous_variant | 0.23 | rifampicin | Not assoc w R - Interim |
rpoC | 767044 | c.3675G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 767080 | c.3711G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoC | 767100 | p.Lys1244Arg | missense_variant | 0.13 | rifampicin | |
rpoC | 767107 | c.3738C>T | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 | clofazimine | Not assoc w R |
bedaquiline | Not assoc w R - Interim | |||||
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 | clofazimine | Not assoc w R |
bedaquiline | Not assoc w R - Interim | |||||
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 | streptomycin | Not assoc w R |
rpsL | 781817 | c.258G>T | synonymous_variant | 0.16 | streptomycin | |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.17 | streptomycin | |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.15 | streptomycin | Not assoc w R - Interim |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.13 | streptomycin | |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.14 | streptomycin | |
rpsL | 781877 | c.318T>A | synonymous_variant | 0.14 | streptomycin | |
rplC | 800672 | c.-137G>C | upstream_gene_variant | 0.12 | linezolid | |
rplC | 800693 | c.-116A>C | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800703 | c.-106_-104delTTGinsCC | upstream_gene_variant | 0.15 | linezolid | |
rplC | 800715 | c.-94A>C | upstream_gene_variant | 0.14 | linezolid | |
rplC | 800720 | c.-89T>C | upstream_gene_variant | 0.14 | linezolid | |
rplC | 800723 | c.-86C>G | upstream_gene_variant | 0.12 | linezolid | |
rplC | 800735 | c.-74C>G | upstream_gene_variant | 0.12 | linezolid | |
Rv1129c | 1254562 | c.-28T>C | upstream_gene_variant | 1.0 | moxifloxacin | Not assoc w R |
levofloxacin | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
isoniazid | Not assoc w R | |||||
Rv1258c | 1407274 | p.Asp23Asn | missense_variant | 1.0 | streptomycin | |
isoniazid | ||||||
pyrazinamide | ||||||
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1471922 | n.78delT | non_coding_transcript_exon_variant | 0.31 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1471925 | n.80T>C | non_coding_transcript_exon_variant | 0.31 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1471931 | n.87delA | non_coding_transcript_exon_variant | 0.3 | streptomycin | |
kanamycin | ||||||
capreomycin | ||||||
amikacin | ||||||
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.3 | streptomycin | Uncertain significance |
kanamycin | ||||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.59 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.67 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.45 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.45 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.46 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.46 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.48 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.47 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.54 | streptomycin | |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.5 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.79 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.93 | streptomycin | Uncertain significance |
kanamycin | Not assoc w R | |||||
capreomycin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.67 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.63 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.63 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Not assoc w R | |||||
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.62 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.86 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.91 | streptomycin | Uncertain significance |
kanamycin | Uncertain significance | |||||
capreomycin | Uncertain significance | |||||
amikacin | Uncertain significance | |||||
rrl | 1475760 | n.2105_2106delGC | non_coding_transcript_exon_variant | 1.0 | capreomycin | |
linezolid | ||||||
rrl | 1475764 | n.2107A>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | |
linezolid | ||||||
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 1.0 | capreomycin | |
linezolid | ||||||
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.58 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.61 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.56 | capreomycin | Uncertain significance |
linezolid | Uncertain significance | |||||
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.47 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.39 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.41 | capreomycin | Not assoc w R |
linezolid | Uncertain significance | |||||
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.38 | capreomycin | Uncertain significance |
linezolid | ||||||
rpsA | 1833589 | c.48A>C | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1833595 | c.54T>G | synonymous_variant | 0.12 | pyrazinamide | |
rpsA | 1833596 | p.Ser19Ala | missense_variant | 0.12 | pyrazinamide | |
rpsA | 1833604 | c.63C>T | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1833709 | c.168C>T | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1833724 | c.183C>T | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833733 | c.192C>G | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.18 | pyrazinamide | |
rpsA | 1833748 | c.207C>G | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1833751 | c.210C>T | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1833838 | c.297G>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.27 | pyrazinamide | |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.33 | pyrazinamide | |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.31 | pyrazinamide | |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.32 | pyrazinamide | |
rpsA | 1833874 | c.333T>G | synonymous_variant | 0.28 | pyrazinamide | |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.27 | pyrazinamide | |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1833991 | c.450C>G | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834009 | c.468C>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834012 | c.471G>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.26 | pyrazinamide | |
rpsA | 1834030 | c.489C>G | synonymous_variant | 0.28 | pyrazinamide | |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.3 | pyrazinamide | |
rpsA | 1834073 | p.Lys178Arg | missense_variant | 0.29 | pyrazinamide | |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.18 | pyrazinamide | |
rpsA | 1834228 | c.687C>A | synonymous_variant | 0.2 | pyrazinamide | |
rpsA | 1834231 | c.690T>G | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834234 | c.693G>T | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.22 | pyrazinamide | |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.23 | pyrazinamide | |
rpsA | 1834252 | c.711C>G | synonymous_variant | 0.21 | pyrazinamide | |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.23 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834297 | c.756C>T | synonymous_variant | 0.25 | pyrazinamide | |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.24 | pyrazinamide | |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834339 | c.798C>T | synonymous_variant | 0.19 | pyrazinamide | |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.2 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.15 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.16 | pyrazinamide | |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.16 | pyrazinamide | Not assoc w R - Interim |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.16 | pyrazinamide | |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.17 | pyrazinamide | |
rpsA | 1834543 | c.1002C>G | synonymous_variant | 0.14 | pyrazinamide | |
rpsA | 1834555 | c.1014T>G | synonymous_variant | 0.13 | pyrazinamide | |
rpsA | 1834557 | p.Ala339Gly | missense_variant | 0.11 | pyrazinamide | |
tsnR | 1853604 | c.-2C>T | upstream_gene_variant | 1.0 | linezolid | Uncertain significance |
tsnR | 1854300 | p.Leu232Pro | missense_variant | 1.0 | linezolid | Not assoc w R |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 | capreomycin | Not assoc w R |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 | isoniazid | Not assoc w R |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.97 | pyrazinamide | Not assoc w R |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 | clofazimine | Not assoc w R |
bedaquiline | Not assoc w R - Interim | |||||
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 | pyrazinamide | Not assoc w R |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 | pyrazinamide | |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 | isoniazid | Not assoc w R |
Rv2477c | 2782498 | c.1545C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
streptomycin | Not assoc w R - Interim | |||||
levofloxacin | Not assoc w R | |||||
kanamycin | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
amikacin | Not assoc w R | |||||
Rv2477c | 2783302 | c.741A>G | synonymous_variant | 0.12 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783311 | c.732T>C | synonymous_variant | 0.19 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783317 | c.726G>C | synonymous_variant | 0.2 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783341 | c.702C>G | synonymous_variant | 0.17 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783350 | c.693T>C | synonymous_variant | 0.15 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783353 | c.690T>C | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783356 | c.687C>G | synonymous_variant | 0.14 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783362 | c.681G>C | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783371 | c.672A>G | synonymous_variant | 0.12 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783374 | c.669G>C | synonymous_variant | 0.12 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2477c | 2783377 | c.666C>G | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
kanamycin | ||||||
rifampicin | ||||||
amikacin | ||||||
Rv2752c | 3066745 | c.-554C>A | upstream_gene_variant | 1.0 | ethambutol | |
moxifloxacin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 | cycloserine | |
mtrB | 3625065 | p.Met517Leu | missense_variant | 0.98 | bedaquiline | Uncertain significance |
rifampicin | Not assoc w R | |||||
mtrA | 3627068 | c.282T>C | synonymous_variant | 0.17 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3627071 | c.-458G>C | upstream_gene_variant | 0.19 | bedaquiline | |
rifampicin | ||||||
mtrB | 3627083 | c.-470G>C | upstream_gene_variant | 0.17 | bedaquiline | |
rifampicin | ||||||
mtrA | 3627098 | c.252A>C | synonymous_variant | 0.15 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
mtrB | 3627104 | c.-491C>G | upstream_gene_variant | 0.16 | bedaquiline | |
rifampicin | ||||||
mtrB | 3627110 | c.-497G>C | upstream_gene_variant | 0.17 | bedaquiline | |
rifampicin | ||||||
mtrA | 3627119 | c.231T>G | synonymous_variant | 0.14 | bedaquiline | |
rifampicin | Not assoc w R - Interim | |||||
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 | cycloserine | |
rpoA | 3877656 | c.852T>G | synonymous_variant | 0.11 | rifampicin | Not assoc w R - Interim |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3877839 | c.669G>T | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3877848 | c.660C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3877856 | c.652T>C | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3877860 | c.648C>T | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3877875 | c.633T>C | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3877881 | c.627G>C | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3877887 | c.621G>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3877893 | c.615C>T | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoA | 3877900 | p.Ser203Thr | missense_variant | 0.14 | rifampicin | |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.15 | rifampicin | Not assoc w R - Interim |
rpoA | 3877908 | c.600T>C | synonymous_variant | 0.14 | rifampicin | Not assoc w R - Interim |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878079 | c.429C>T | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3878102 | p.Val136Ile | missense_variant | 0.17 | rifampicin | |
rpoA | 3878103 | c.405A>G | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878127 | c.381G>C | synonymous_variant | 0.16 | rifampicin | |
rpoA | 3878130 | c.378C>G | synonymous_variant | 0.18 | rifampicin | |
rpoA | 3878143 | p.Gly122Asp | missense_variant | 0.21 | rifampicin | Uncertain significance |
rpoA | 3878160 | c.348C>G | synonymous_variant | 0.2 | rifampicin | Not assoc w R - Interim |
rpoA | 3878169 | c.339G>C | synonymous_variant | 0.21 | rifampicin | Not assoc w R - Interim |
rpoA | 3878175 | c.333G>T | synonymous_variant | 0.2 | rifampicin | |
rpoA | 3878184 | c.324C>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878196 | p.Glu104Ala | missense_variant | 0.18 | rifampicin | Uncertain significance |
rpoA | 3878205 | c.303T>A | synonymous_variant | 0.17 | rifampicin | |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.19 | rifampicin | Not assoc w R - Interim |
rpoA | 3878259 | c.249G>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.16 | rifampicin | Not assoc w R - Interim |
rpoA | 3878274 | c.234G>C | synonymous_variant | 0.15 | rifampicin | |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.16 | rifampicin | Uncertain significance |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.17 | rifampicin | Not assoc w R - Interim |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878310 | c.198G>T | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.18 | rifampicin | Not assoc w R - Interim |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.13 | rifampicin | Not assoc w R - Interim |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.12 | rifampicin | Not assoc w R - Interim |
rpoA | 3879088 | c.-581A>C | upstream_gene_variant | 0.13 | rifampicin | |
rpoA | 3879094 | c.-587T>C | upstream_gene_variant | 0.14 | rifampicin | |
rpoA | 3879124 | c.-617G>C | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3879127 | c.-620T>C | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3879136 | c.-629A>G | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3879154 | c.-647T>C | upstream_gene_variant | 0.12 | rifampicin | |
rpoA | 3879160 | c.-653A>G | upstream_gene_variant | 0.12 | rifampicin | |
clpC1 | 4038989 | c.1716T>C | synonymous_variant | 0.29 | pyrazinamide | |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.27 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039100 | c.1605C>G | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4039106 | c.1599G>C | synonymous_variant | 0.12 | pyrazinamide | |
clpC1 | 4039112 | c.1593C>G | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4039118 | c.1587C>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039121 | c.1584T>C | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4039166 | c.1539G>A | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039169 | c.1536A>G | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039172 | c.1533A>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039178 | c.1527G>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.23 | pyrazinamide | |
clpC1 | 4039190 | c.1515C>T | synonymous_variant | 0.24 | pyrazinamide | |
clpC1 | 4039220 | c.1485G>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039265 | c.1440C>T | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039277 | c.1428C>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039280 | c.1425G>T | synonymous_variant | 0.22 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039283 | c.1422C>T | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039286 | c.1419T>G | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039292 | c.1413C>T | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039316 | p.Glu463Asp | missense_variant | 0.18 | pyrazinamide | |
clpC1 | 4039319 | c.1386T>A | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039322 | c.1383T>G | synonymous_variant | 0.14 | pyrazinamide | |
clpC1 | 4039328 | c.1377A>C | synonymous_variant | 0.13 | pyrazinamide | |
clpC1 | 4039360 | p.Ser449Arg | missense_variant | 0.13 | pyrazinamide | |
clpC1 | 4039361 | c.1344C>G | synonymous_variant | 0.12 | pyrazinamide | |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039451 | c.1254G>A | synonymous_variant | 0.12 | pyrazinamide | |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4039589 | c.1116G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4039649 | c.1056G>T | synonymous_variant | 0.35 | pyrazinamide | |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 0.39 | pyrazinamide | |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.46 | pyrazinamide | |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.47 | pyrazinamide | |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.45 | pyrazinamide | |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.46 | pyrazinamide | |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.4 | pyrazinamide | |
clpC1 | 4039751 | c.954A>G | synonymous_variant | 0.41 | pyrazinamide | |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.34 | pyrazinamide | |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.31 | pyrazinamide | |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039775 | c.930G>C | synonymous_variant | 0.28 | pyrazinamide | |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039787 | c.918G>C | synonymous_variant | 0.26 | pyrazinamide | |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039844 | c.861C>T | synonymous_variant | 0.23 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039850 | c.855T>C | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039865 | c.840T>C | synonymous_variant | 0.27 | pyrazinamide | |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.25 | pyrazinamide | |
clpC1 | 4039907 | c.798G>A | synonymous_variant | 0.24 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.18 | pyrazinamide | |
clpC1 | 4039934 | c.771G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039943 | c.762G>C | synonymous_variant | 0.16 | pyrazinamide | |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4039964 | c.741C>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039975 | p.Asp244Asn | missense_variant | 0.21 | pyrazinamide | Uncertain significance |
clpC1 | 4039979 | c.726C>G | synonymous_variant | 0.2 | pyrazinamide | |
clpC1 | 4039982 | c.723G>A | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040000 | c.705C>T | synonymous_variant | 0.21 | pyrazinamide | |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.21 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.19 | pyrazinamide | |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.22 | pyrazinamide | |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.25 | pyrazinamide | Not assoc w R - Interim |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.23 | pyrazinamide | |
panD | 4044872 | c.-591C>T | upstream_gene_variant | 1.0 | pyrazinamide | |
glpK | 4138529 | c.1227G>C | synonymous_variant | 0.11 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138535 | p.Asp407Glu | missense_variant | 0.12 | ethambutol | Uncertain significance |
moxifloxacin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
levofloxacin | ||||||
rifampicin | Uncertain significance | |||||
isoniazid | Uncertain significance | |||||
glpK | 4138568 | c.1188A>C | synonymous_variant | 0.13 | ethambutol | |
moxifloxacin | ||||||
streptomycin | ||||||
levofloxacin | ||||||
rifampicin | ||||||
isoniazid | ||||||
glpK | 4138622 | c.1134C>T | synonymous_variant | 0.92 | ethambutol | Not assoc w R |
moxifloxacin | Not assoc w R | |||||
streptomycin | Not assoc w R - Interim | |||||
levofloxacin | Not assoc w R | |||||
rifampicin | Not assoc w R | |||||
isoniazid | Not assoc w R | |||||
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 | ethambutol | Not assoc w R |
embC | 4242643 | c.2781C>T | synonymous_variant | 1.0 | ethambutol | Not assoc w R |
ethA | 4326090 | c.1384C>T | synonymous_variant | 1.0 | ethionamide | Not assoc w R - Interim |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 | capreomycin | Not assoc w R |
amikacin | Not assoc w R | |||||
kanamycin | Not assoc w R | |||||
whiB6 | 4338732 | c.-211C>T | upstream_gene_variant | 1.0 | capreomycin | |
amikacin | ||||||
kanamycin | ||||||
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 | streptomycin | Not assoc w R |