Rv3696c - c.1227G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
5 RR-TB
25 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
37 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| lineage4.4.1.2 | 1 |
| lineage2.2.1 | 4 |
| lineage4.1.2.1 | 3 |
| La1.7;lineage4.9 | 4 |
| 3 | |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4 | 1 |
| lineage4.3.4 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| La1.6;lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR363506 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR6866807 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212123 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR751326 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR373947 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR387051 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None |
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