Rv3596c - c.1413C>T
Drug resistance types
111 Sensitive
8 RR-TB
42 HR-TB
15 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
85 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| lineage4.9 | 148 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4 | 6 |
| lineage4.1.1.2 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 6 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.3.2.1 | 3 |
| La1;lineage4.1.2 | 1 |
| La1.2 | 1 |
| lineage2.2.1.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1 | 12 |
| lineage1.1.1;lineage4 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;lineage4 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage3 | 4 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.3.4 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage6.1.3 | 1 |
| lineage5.1.2 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage5.1.4 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 2 |
| lineage4.5 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| 1 | |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage1.1.1 | 1 |
| lineage3.1.2.1;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.7.1 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 264 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4769450 | Other | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR473332 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR6198317 | Other | La1.2 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180345 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1023509 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR18913798 | Sensitive | lineage2.2.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369151 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR9786592 | Other | lineage4.3.4.2 | None | SRR29096943 | Sensitive | lineage3.1.2.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR8692887 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR29050859 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR21690362 | Other | lineage1.1.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR11252736 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR6046210 | Other | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR363490 | Sensitive | lineage4.9 | None |
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