Rv3596c - c.1413C>T
Drug resistance types
124 Sensitive
1 RR-TB
76 HR-TB
4 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4 | 75 |
| 58 | |
| lineage4.9 | 84 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.1.2.1 | 8 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 2 |
| La1 | 2 |
| lineage5.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 2 |
| lineage2.2.1 | 14 |
| lineage4.5 | 1 |
| lineage3 | 4 |
| lineage4.3.4 | 2 |
| lineage4.3.2.1 | 4 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage2 | 1 |
| La1.7.1 | 1 |
| La1.8.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1 | 2 |
| lineage4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage5.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 280 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046802 | Other | lineage4 | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR4831638 | Sensitive | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR502943 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR502889 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR8217918 | HR-TB | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063862 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR10796569 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400326 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4798431 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4188247 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4797313 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4812155 | Sensitive | None | ERR4811030 | Sensitive | None | ERR6198317 | Other | La1.2 | None | ERR6358979 | Other | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736848 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9119669 | HR-TB | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR10808805 | Sensitive | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR17658565 | Other | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18913798 | Sensitive | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | ERR8025740 | Pre-XDR-TB | lineage2.2.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR8692887 | Other | None | SRR8692899 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR158583 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675246 | Sensitive | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR181887 | HR-TB | None | SRR3675279 | Other | None | SRR3675283 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675502 | Other | None | SRR3675387 | Sensitive | None | ERR4816964 | Other | lineage4.9 | None | SRR3675522 | Other | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR3675571 | HR-TB | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | ERR2446566 | Other | lineage4.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR4033529 | HR-TB | lineage4.3.2.1 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4819462 | Other | lineage4 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341396 | Other | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR1023509 | Other | None | SRR5341456 | Other | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046046 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None |
|---|
