TB-Profiler result

Run: SRR6045050
Summary

Run ID: SRR6045050

Sample name:

Date: 04-04-2023 11:52:03

Number of reads: 2801533

Percentage reads mapped: 77.04

Strain: lineage4.3.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.3 Euro-American (LAM) mainly-LAM None 1.0
lineage4.3.2 Euro-American (LAM) LAM3 None 1.0
lineage4.3.2.1 Euro-American (LAM) LAM3 RD761 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5520 p.Pro94Leu missense_variant 1.0
gyrA 7066 c.-236G>C upstream_gene_variant 0.13
gyrA 7078 c.-224A>T upstream_gene_variant 0.16
gyrA 7084 c.-218A>G upstream_gene_variant 0.16
gyrA 7090 c.-212C>T upstream_gene_variant 0.16
gyrA 7093 c.-209T>C upstream_gene_variant 0.15
gyrA 7100 c.-202T>C upstream_gene_variant 0.19
gyrA 7123 c.-179C>G upstream_gene_variant 0.2
gyrA 7126 c.-176G>C upstream_gene_variant 0.17
gyrA 7129 c.-173T>G upstream_gene_variant 0.17
gyrA 7136 c.-166T>C upstream_gene_variant 0.16
gyrA 7141 c.-161T>C upstream_gene_variant 0.16
gyrA 7144 c.-158A>G upstream_gene_variant 0.16
gyrA 7150 c.-152G>A upstream_gene_variant 0.15
gyrA 7153 c.-149G>C upstream_gene_variant 0.15
gyrA 7168 c.-134C>G upstream_gene_variant 0.14
gyrA 7222 c.-80C>T upstream_gene_variant 0.95
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7421 c.120G>C synonymous_variant 0.14
gyrA 7427 c.126G>C synonymous_variant 0.18
gyrA 7430 c.129G>A synonymous_variant 0.18
gyrA 7442 c.141G>C synonymous_variant 0.25
gyrA 7457 c.156T>C synonymous_variant 0.25
gyrA 7460 c.159C>T synonymous_variant 0.25
gyrA 7463 c.162G>C synonymous_variant 0.24
gyrA 7466 c.165G>C synonymous_variant 0.21
gyrA 7472 c.171T>C synonymous_variant 0.23
gyrA 7475 c.174A>G synonymous_variant 0.22
gyrA 7480 p.Phe60Tyr missense_variant 0.26
gyrA 7484 c.183T>C synonymous_variant 0.27
gyrA 7490 c.189C>G synonymous_variant 0.28
gyrA 7496 c.195C>G synonymous_variant 0.28
gyrA 7499 c.198G>C synonymous_variant 0.28
gyrA 7523 c.222C>G synonymous_variant 0.29
gyrA 7526 c.225G>C synonymous_variant 0.28
gyrA 7532 c.231T>G synonymous_variant 0.28
gyrA 7535 c.234C>G synonymous_variant 0.28
gyrA 7547 c.246C>T synonymous_variant 0.28
gyrA 7559 c.258G>A synonymous_variant 0.26
gyrA 7569 p.Ala90Ser missense_variant 0.23
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7587 c.286C>T synonymous_variant 0.17
gyrA 7595 c.294C>T synonymous_variant 0.16
gyrA 7601 c.300C>G synonymous_variant 0.14
gyrA 7607 c.306C>A synonymous_variant 0.14
gyrA 7625 c.324G>A synonymous_variant 0.15
gyrA 8915 c.1614A>G synonymous_variant 0.12
gyrA 8945 c.1644G>C synonymous_variant 0.12
gyrA 8946 c.1645T>C synonymous_variant 0.14
gyrA 8967 p.Ala556Lys missense_variant 0.2
gyrA 8987 c.1686C>G synonymous_variant 0.2
gyrA 8990 c.1689C>G synonymous_variant 0.2
gyrA 8993 c.1692C>T synonymous_variant 0.19
gyrA 8996 c.1695T>C synonymous_variant 0.19
gyrA 8998 p.Leu566Trp missense_variant 0.19
gyrA 9018 p.Gln573Lys missense_variant 0.18
gyrA 9023 c.1722A>T synonymous_variant 0.17
gyrA 9026 c.1725G>C synonymous_variant 0.16
gyrA 9029 c.1728T>C synonymous_variant 0.16
gyrA 9032 c.1731T>C synonymous_variant 0.15
gyrA 9035 c.1734G>C synonymous_variant 0.15
gyrA 9044 c.1743C>G synonymous_variant 0.16
gyrA 9051 c.1750T>C synonymous_variant 0.14
gyrA 9304 p.Gly668Asp missense_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 0.12
rpoB 760454 c.648C>G synonymous_variant 0.12
rpoB 760469 c.663C>T synonymous_variant 0.12
rpoB 760487 c.681G>C synonymous_variant 0.12
rpoB 760502 c.696C>G synonymous_variant 0.13
rpoB 760508 c.702G>A synonymous_variant 0.14
rpoB 760511 c.705G>C synonymous_variant 0.16
rpoB 760522 p.Ser239Asn missense_variant 0.16
rpoB 760841 c.1035T>C synonymous_variant 0.14
rpoB 760858 p.Val351Ala missense_variant 0.15
rpoB 760862 c.1056G>C synonymous_variant 0.16
rpoB 760869 p.Val355Leu missense_variant 0.17
rpoB 760877 c.1071G>C synonymous_variant 0.16
rpoB 760883 c.1077G>C synonymous_variant 0.16
rpoB 760886 c.1080A>G synonymous_variant 0.16
rpoB 760887 p.Thr361Val missense_variant 0.16
rpoB 760910 c.1104C>T synonymous_variant 0.14
rpoB 760916 c.1110C>T synonymous_variant 0.15
rpoB 760919 c.1113C>T synonymous_variant 0.14
rpoB 761027 c.1221A>C synonymous_variant 0.15
rpoB 761036 c.1230G>C synonymous_variant 0.17
rpoB 761037 c.1231T>C synonymous_variant 0.17
rpoB 761051 c.1245G>T synonymous_variant 0.19
rpoB 761054 c.1248G>C synonymous_variant 0.18
rpoB 761057 c.1251G>C synonymous_variant 0.18
rpoB 761060 c.1254C>G synonymous_variant 0.18
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761084 c.1278C>A synonymous_variant 0.22
rpoB 761097 c.1291_1293delAGCinsTCG synonymous_variant 0.19
rpoB 761102 c.1296A>G synonymous_variant 0.18
rpoB 761132 c.1326G>T synonymous_variant 0.18
rpoB 761133 c.1327T>C synonymous_variant 0.18
rpoB 761147 c.1341C>T synonymous_variant 0.2
rpoB 761150 c.1344A>T synonymous_variant 0.18
rpoB 761165 c.1359G>C synonymous_variant 0.21
rpoB 761171 c.1365C>T synonymous_variant 0.17
rpoB 761178 p.Ser458Thr missense_variant 0.15
rpoB 761186 p.Glu460Asp missense_variant 0.14
rpoB 761189 c.1383T>C synonymous_variant 0.13
rpoB 761195 c.1389G>C synonymous_variant 0.14
rpoB 761198 c.1392G>T synonymous_variant 0.15
rpoB 761219 c.1413G>C synonymous_variant 0.16
rpoB 761234 c.1428G>C synonymous_variant 0.12
rpoB 761273 c.1467T>C synonymous_variant 0.12
rpoB 761570 c.1764T>C synonymous_variant 0.11
rpoB 761615 c.1809A>C synonymous_variant 0.12
rpoB 761636 c.1830G>T synonymous_variant 0.15
rpoB 761645 c.1839C>G synonymous_variant 0.15
rpoB 761648 c.1842T>C synonymous_variant 0.15
rpoB 761666 c.1860G>C synonymous_variant 0.12
rpoB 761669 c.1863C>T synonymous_variant 0.13
rpoB 761675 c.1869G>T synonymous_variant 0.17
rpoB 761750 c.1944G>C synonymous_variant 0.11
rpoB 762101 c.2295C>G synonymous_variant 0.13
rpoB 762114 p.Ile770Val missense_variant 0.14
rpoB 762122 c.2316C>T synonymous_variant 0.14
rpoB 762185 c.2379G>C synonymous_variant 0.11
rpoB 762194 c.2388G>C synonymous_variant 0.11
rpoB 762245 c.2439G>C synonymous_variant 0.12
rpoC 762959 c.-411G>C upstream_gene_variant 0.19
rpoC 762962 c.-408C>T upstream_gene_variant 0.19
rpoC 762983 c.-387C>T upstream_gene_variant 0.2
rpoC 762989 c.-381G>A upstream_gene_variant 0.21
rpoC 762995 c.-375G>T upstream_gene_variant 0.22
rpoC 763031 c.-339T>G upstream_gene_variant 0.22
rpoC 763034 c.-336C>A upstream_gene_variant 0.22
rpoC 763040 c.-330C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.25
rpoC 763076 c.-294C>A upstream_gene_variant 0.25
rpoC 763082 c.-288C>T upstream_gene_variant 0.25
rpoC 763088 c.-282C>G upstream_gene_variant 0.23
rpoC 763094 c.-276G>C upstream_gene_variant 0.24
rpoC 763115 c.-255T>C upstream_gene_variant 0.2
rpoC 763127 c.-243G>C upstream_gene_variant 0.19
rpoC 763136 c.-234C>T upstream_gene_variant 0.18
rpoC 763142 c.-228C>G upstream_gene_variant 0.17
rpoC 763157 c.-213G>T upstream_gene_variant 0.15
rpoC 763166 c.-204A>G upstream_gene_variant 0.16
rpoC 763172 c.-198G>C upstream_gene_variant 0.16
rpoC 763178 c.-192G>A upstream_gene_variant 0.16
rpoC 763187 c.-183C>G upstream_gene_variant 0.14
rpoC 763486 c.117T>C synonymous_variant 0.12
rpoC 763492 c.123G>C synonymous_variant 0.13
rpoC 763528 c.159G>A synonymous_variant 0.12
rpoC 763546 c.177A>G synonymous_variant 0.17
rpoC 763570 c.201G>C synonymous_variant 0.19
rpoC 763594 c.225C>T synonymous_variant 0.17
rpoC 763618 c.249C>T synonymous_variant 0.15
rpoC 763633 c.264T>C synonymous_variant 0.15
rpoC 763660 c.291T>G synonymous_variant 0.18
rpoC 763666 c.297G>C synonymous_variant 0.17
rpoC 763669 c.300C>G synonymous_variant 0.19
rpoC 763675 c.306C>G synonymous_variant 0.18
rpoC 763699 c.330G>T synonymous_variant 0.21
rpoC 763702 c.333C>G synonymous_variant 0.19
rpoC 763708 c.339G>T synonymous_variant 0.19
rpoC 763711 c.342G>C synonymous_variant 0.2
rpoC 763714 c.345G>A synonymous_variant 0.18
rpoC 763717 c.348T>C synonymous_variant 0.18
rpoC 763723 c.354G>C synonymous_variant 0.19
rpoC 763732 c.363C>G synonymous_variant 0.19
rpoC 763741 c.372C>T synonymous_variant 0.16
rpoC 763747 c.378G>A synonymous_variant 0.16
rpoC 763765 c.396T>C synonymous_variant 0.16
rpoC 763768 c.399C>T synonymous_variant 0.16
rpoC 763774 c.405G>C synonymous_variant 0.16
rpoC 763781 p.Ser138Ala missense_variant 0.16
rpoC 763792 p.Glu141Asp missense_variant 0.15
rpoC 763796 p.Met143Leu missense_variant 0.12
rpoC 763801 c.432C>T synonymous_variant 0.12
rpoC 764458 c.1089G>C synonymous_variant 0.12
rpoC 764461 c.1092A>G synonymous_variant 0.12
rpoC 764497 c.1128A>G synonymous_variant 0.12
rpoC 764506 c.1137C>T synonymous_variant 0.12
rpoC 764521 c.1152T>C synonymous_variant 0.11
rpoC 764539 c.1170C>G synonymous_variant 0.12
rpoC 764548 c.1179G>A synonymous_variant 0.13
rpoC 764554 c.1185C>T synonymous_variant 0.14
rpoC 764566 c.1197C>G synonymous_variant 0.17
rpoC 764575 c.1206T>G synonymous_variant 0.16
rpoC 764578 c.1209C>G synonymous_variant 0.16
rpoC 764593 c.1224C>T synonymous_variant 0.17
rpoC 764602 c.1233C>T synonymous_variant 0.17
rpoC 764611 c.1242G>C synonymous_variant 0.18
rpoC 764626 c.1257C>T synonymous_variant 0.17
rpoC 764632 c.1263T>C synonymous_variant 0.17
rpoC 764635 c.1266C>T synonymous_variant 0.17
rpoC 764650 c.1281G>T synonymous_variant 0.23
rpoC 764713 c.1344G>T synonymous_variant 0.2
rpoC 764746 c.1377G>T synonymous_variant 0.18
rpoC 764752 c.1383G>C synonymous_variant 0.19
rpoC 764758 c.1389C>G synonymous_variant 0.19
rpoC 764764 c.1395T>C synonymous_variant 0.17
rpoC 764803 c.1434C>T synonymous_variant 0.12
rpoC 764995 c.1626C>G synonymous_variant 0.94
rpoC 765861 p.Phe831Tyr missense_variant 0.14
rpoC 765868 c.2499G>A synonymous_variant 0.15
rpoC 765871 c.2502T>G synonymous_variant 0.14
rpoC 765875 p.Val836Ile missense_variant 0.16
rpoC 765886 c.2517C>G synonymous_variant 0.14
rpoC 765907 c.2538G>T synonymous_variant 0.16
rpoC 765928 c.2559C>G synonymous_variant 0.17
rpoC 765937 c.2568T>C synonymous_variant 0.17
rpoC 765940 c.2571A>T synonymous_variant 0.17
rpoC 765946 c.2577C>T synonymous_variant 0.17
rpoC 765947 c.2578T>C synonymous_variant 0.16
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 0.13
rpoC 765973 c.2604C>T synonymous_variant 0.14
rpoC 765979 c.2610C>G synonymous_variant 0.12
rpoC 765982 c.2613C>T synonymous_variant 0.12
rpoC 766594 c.3225G>T synonymous_variant 0.12
rpoC 766607 p.Ile1080Leu missense_variant 0.12
rpoC 766618 c.3249G>T synonymous_variant 0.12
rpoC 766996 c.3627C>T synonymous_variant 0.16
rpoC 767002 c.3633G>C synonymous_variant 0.18
rpoC 767008 c.3639G>A synonymous_variant 0.19
rpoC 767044 c.3675G>C synonymous_variant 0.26
rpoC 767080 c.3711G>C synonymous_variant 0.22
rpoC 767098 c.3729T>C synonymous_variant 0.21
rpoC 767100 p.Lys1244Arg missense_variant 0.2
rpoC 767104 c.3735C>G synonymous_variant 0.19
rpoC 767107 c.3738C>T synonymous_variant 0.19
rpoC 767119 c.3750A>G synonymous_variant 0.18
rpoC 767125 c.3756G>C synonymous_variant 0.18
rpoC 767134 c.3765C>T synonymous_variant 0.17
rpoC 767138 c.3769C>T synonymous_variant 0.17
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
atpE 1461113 c.69C>T synonymous_variant 0.14
atpE 1461132 p.Val30Ile missense_variant 0.17
atpE 1461149 c.105T>G synonymous_variant 0.15
atpE 1461155 c.111C>G synonymous_variant 0.15
atpE 1461161 c.117C>G synonymous_variant 0.15
atpE 1461167 c.123G>T synonymous_variant 0.14
atpE 1461170 c.126A>G synonymous_variant 0.13
atpE 1461179 c.135G>T synonymous_variant 0.12
atpE 1461182 c.138A>G synonymous_variant 0.12
atpE 1461183 p.Gly47Ser missense_variant 0.12
atpE 1461197 c.153A>C synonymous_variant 0.12
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.12
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.12
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.13
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.12
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 0.25
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.25
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 0.18
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 0.17
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 0.18
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.18
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.19
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.19
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 0.19
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 0.21
rrs 1472043 n.198T>A non_coding_transcript_exon_variant 0.2
rrs 1472050 n.205G>C non_coding_transcript_exon_variant 0.21
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.22
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.24
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.31
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.31
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 0.29
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.24
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.27
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.25
rrs 1472287 n.442C>T non_coding_transcript_exon_variant 0.25
rrs 1472289 n.444T>G non_coding_transcript_exon_variant 0.27
rrs 1472290 n.445C>G non_coding_transcript_exon_variant 0.27
rrs 1472297 n.453_465delGTCCGGGTTCTCT non_coding_transcript_exon_variant 0.21
rrs 1472315 n.470T>G non_coding_transcript_exon_variant 0.23
rrs 1472324 n.479G>C non_coding_transcript_exon_variant 0.25
rrs 1472325 n.480G>C non_coding_transcript_exon_variant 0.25
rrs 1472327 n.482G>A non_coding_transcript_exon_variant 0.25
rrs 1472328 n.483G>C non_coding_transcript_exon_variant 0.25
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 1.0
rrs 1472337 n.492C>T non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.68
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 0.75
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.79
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.71
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 0.57
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.83
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.79
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 0.65
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 0.64
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 0.62
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 0.65
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 0.65
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.47
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.47
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.46
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.46
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.45
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.45
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.46
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.5
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 0.43
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 0.43
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 0.48
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.47
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.45
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.45
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.42
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 0.43
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 0.48
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.56
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.5
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 0.24
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.24
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 0.24
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.19
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 0.19
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 0.19
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.18
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.3
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.29
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 0.35
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 0.43
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.61
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 0.65
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 0.65
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.65
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 0.65
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 0.6
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 0.6
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 0.6
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 0.67
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 0.64
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 0.64
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 0.64
rrl 1473950 n.293G>T non_coding_transcript_exon_variant 0.64
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 0.22
rrl 1474089 n.432C>T non_coding_transcript_exon_variant 0.22
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 0.22
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 0.18
rrl 1474103 n.446A>C non_coding_transcript_exon_variant 0.18
rrl 1474106 n.449_450insCT non_coding_transcript_exon_variant 0.18
rrl 1474109 n.453_454delAT non_coding_transcript_exon_variant 0.18
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 0.18
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.18
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.18
rrl 1474181 n.524_525insT non_coding_transcript_exon_variant 0.25
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 0.25
rrl 1474185 n.529delA non_coding_transcript_exon_variant 0.25
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.5
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 0.54
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 0.54
rrl 1474292 n.636_649delTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.58
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.58
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.58
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.75
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.77
rrl 1474376 n.719T>A non_coding_transcript_exon_variant 0.73
rrl 1474387 n.730C>T non_coding_transcript_exon_variant 0.73
rrl 1474413 n.756A>C non_coding_transcript_exon_variant 0.57
rrl 1474415 n.759_781delCACACGCGCATACGCGCGTGTGA non_coding_transcript_exon_variant 0.67
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.91
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.91
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.89
rrl 1474507 n.850G>C non_coding_transcript_exon_variant 0.89
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.38
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.38
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.29
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.29
rrl 1474638 n.981C>A non_coding_transcript_exon_variant 0.33
rrl 1474639 n.982G>T non_coding_transcript_exon_variant 0.33
rrl 1474640 n.983C>T non_coding_transcript_exon_variant 0.33
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 0.78
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 0.88
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 0.92
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.6
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.6
rrl 1475031 n.1374G>C non_coding_transcript_exon_variant 0.8
rrl 1475061 n.1406delA non_coding_transcript_exon_variant 0.88
rrl 1475076 n.1419C>A non_coding_transcript_exon_variant 0.88
rrl 1475090 n.1433A>T non_coding_transcript_exon_variant 0.9
rrl 1475114 n.1457C>T non_coding_transcript_exon_variant 0.9
rrl 1475120 n.1463G>T non_coding_transcript_exon_variant 1.0
rrl 1475129 n.1472G>A non_coding_transcript_exon_variant 0.9
rrl 1475202 n.1545G>C non_coding_transcript_exon_variant 0.5
rrl 1475209 n.1552G>A non_coding_transcript_exon_variant 0.5
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.5
rrl 1475220 n.1563G>T non_coding_transcript_exon_variant 0.5
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.67
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 0.6
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.83
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 0.67
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.6
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.6
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.58
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.4
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.38
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 0.27
rrl 1475649 n.1992A>G non_coding_transcript_exon_variant 0.17
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 0.23
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 0.6
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.6
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 0.6
rrl 1475975 n.2318C>T non_coding_transcript_exon_variant 0.17
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.12
rrl 1475989 n.2332T>C non_coding_transcript_exon_variant 0.11
rrl 1475997 n.2340A>T non_coding_transcript_exon_variant 0.12
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.12
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.2
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.3
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.41
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.41
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.53
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.57
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.59
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.59
rrl 1476295 n.2638C>T non_coding_transcript_exon_variant 0.48
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.48
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.48
rrl 1476311 n.2654G>A non_coding_transcript_exon_variant 0.48
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.31
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.26
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.27
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.26
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.22
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 0.19
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.16
rpsA 1833709 c.168C>T synonymous_variant 0.14
rpsA 1833727 c.186G>C synonymous_variant 0.11
rpsA 1833874 c.333T>G synonymous_variant 0.12
rpsA 1833886 c.345C>G synonymous_variant 0.12
rpsA 1833892 c.351G>A synonymous_variant 0.12
rpsA 1833894 p.Ala118Glu missense_variant 0.13
rpsA 1833928 c.387G>C synonymous_variant 0.17
rpsA 1833949 c.408T>C synonymous_variant 0.2
rpsA 1833970 c.429G>C synonymous_variant 0.16
rpsA 1833979 c.438T>C synonymous_variant 0.15
rpsA 1833991 c.450C>G synonymous_variant 0.14
rpsA 1834000 c.459G>C synonymous_variant 0.13
rpsA 1834009 c.468C>T synonymous_variant 0.12
rpsA 1834015 c.474G>C synonymous_variant 0.11
rpsA 1834297 c.756C>T synonymous_variant 0.14
rpsA 1834303 c.762T>G synonymous_variant 0.14
rpsA 1834306 c.765T>C synonymous_variant 0.15
rpsA 1834339 c.798C>T synonymous_variant 0.15
rpsA 1834378 c.837T>C synonymous_variant 0.12
rpsA 1834396 c.855G>T synonymous_variant 0.15
rpsA 1834405 c.864C>T synonymous_variant 0.15
rpsA 1834408 c.867C>T synonymous_variant 0.15
rpsA 1834411 c.870T>C synonymous_variant 0.14
rpsA 1834417 c.876G>C synonymous_variant 0.15
rpsA 1834423 c.882G>C synonymous_variant 0.14
rpsA 1834435 c.894G>C synonymous_variant 0.13
rpsA 1834451 c.910T>C synonymous_variant 0.13
rpsA 1834456 c.915T>G synonymous_variant 0.17
rpsA 1834468 c.927A>G synonymous_variant 0.15
rpsA 1834480 c.939C>G synonymous_variant 0.15
rpsA 1834483 c.942G>A synonymous_variant 0.15
rpsA 1834489 c.948T>C synonymous_variant 0.16
rpsA 1834498 c.957C>T synonymous_variant 0.16
rpsA 1834520 p.Ala327Ser missense_variant 0.18
rpsA 1834528 c.987T>C synonymous_variant 0.19
rpsA 1834543 c.1002C>G synonymous_variant 0.18
rpsA 1834552 c.1011G>T synonymous_variant 0.17
rpsA 1834555 c.1014T>G synonymous_variant 0.17
rpsA 1834557 p.Ala339Gly missense_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
thyA 3073868 p.Thr202Ala missense_variant 0.99
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
rpoA 3877752 p.Asp252Glu missense_variant 0.12
rpoA 3877758 c.750G>C synonymous_variant 0.13
rpoA 3877764 c.744C>G synonymous_variant 0.12
rpoA 3877770 c.738A>G synonymous_variant 0.12
rpoA 3877776 c.732T>C synonymous_variant 0.12
rpoA 3877782 c.726T>C synonymous_variant 0.11
rpoA 3877818 c.690A>G synonymous_variant 0.12
rpoA 3878665 c.-158A>G upstream_gene_variant 0.14
rpoA 3878672 c.-165A>T upstream_gene_variant 0.13
rpoA 3878698 c.-191A>G upstream_gene_variant 0.12
clpC1 4038287 c.2418C>T synonymous_variant 1.0
clpC1 4039265 c.1440C>T synonymous_variant 0.21
clpC1 4039274 c.1431G>C synonymous_variant 0.22
clpC1 4039277 c.1428C>G synonymous_variant 0.25
clpC1 4039280 c.1425G>T synonymous_variant 0.22
clpC1 4039283 c.1422C>T synonymous_variant 0.23
clpC1 4039286 c.1419T>G synonymous_variant 0.23
clpC1 4039292 c.1413C>T synonymous_variant 0.23
clpC1 4039316 p.Glu463Asp missense_variant 0.23
clpC1 4039319 c.1386T>A synonymous_variant 0.23
clpC1 4039322 c.1383T>G synonymous_variant 0.23
clpC1 4039328 c.1377A>C synonymous_variant 0.23
clpC1 4039338 p.Thr456Gln missense_variant 0.22
clpC1 4039346 p.Arg453Ser missense_variant 0.22
clpC1 4039360 p.Ser449Arg missense_variant 0.24
clpC1 4039361 c.1344C>G synonymous_variant 0.24
clpC1 4039391 c.1314T>C synonymous_variant 0.24
clpC1 4039397 c.1308A>G synonymous_variant 0.27
clpC1 4039409 c.1296T>C synonymous_variant 0.28
clpC1 4039412 c.1293T>G synonymous_variant 0.28
clpC1 4039415 p.Glu430Asp missense_variant 0.27
clpC1 4039430 c.1275T>C synonymous_variant 0.27
clpC1 4039442 c.1263A>G synonymous_variant 0.26
clpC1 4039451 c.1254G>A synonymous_variant 0.23
clpC1 4039454 c.1251A>T synonymous_variant 0.23
clpC1 4039457 c.1248C>T synonymous_variant 0.23
clpC1 4039463 c.1242C>G synonymous_variant 0.23
clpC1 4039466 c.1239T>C synonymous_variant 0.23
clpC1 4039469 c.1236T>C synonymous_variant 0.25
clpC1 4039472 c.1233G>C synonymous_variant 0.24
clpC1 4039478 c.1227G>C synonymous_variant 0.23
clpC1 4039481 c.1224T>C synonymous_variant 0.23
clpC1 4039487 c.1218G>C synonymous_variant 0.2
clpC1 4039517 c.1188C>G synonymous_variant 0.16
clpC1 4039522 c.1183C>T synonymous_variant 0.16
clpC1 4039541 c.1164C>G synonymous_variant 0.14
clpC1 4039610 c.1095G>C synonymous_variant 0.15
clpC1 4039616 c.1089G>C synonymous_variant 0.17
clpC1 4039622 c.1083C>T synonymous_variant 0.17
clpC1 4039649 c.1056G>T synonymous_variant 0.2
clpC1 4039652 c.1053G>C synonymous_variant 0.21
clpC1 4039685 c.1020C>T synonymous_variant 0.23
clpC1 4039694 c.1011G>C synonymous_variant 0.23
clpC1 4039724 c.981A>G synonymous_variant 0.27
clpC1 4039733 c.972G>C synonymous_variant 0.27
clpC1 4039739 c.966C>G synonymous_variant 0.26
clpC1 4039751 c.954A>G synonymous_variant 0.27
clpC1 4039757 c.948A>G synonymous_variant 0.28
clpC1 4039760 c.945T>C synonymous_variant 0.28
clpC1 4039766 c.939T>C synonymous_variant 0.28
clpC1 4039769 c.936C>G synonymous_variant 0.28
clpC1 4039775 c.930G>C synonymous_variant 0.29
clpC1 4039778 c.927A>G synonymous_variant 0.29
clpC1 4039787 c.918G>C synonymous_variant 0.29
clpC1 4039793 c.912C>G synonymous_variant 0.26
clpC1 4039805 c.900C>T synonymous_variant 0.26
clpC1 4039814 c.891C>G synonymous_variant 0.25
clpC1 4039817 c.888A>C synonymous_variant 0.24
clpC1 4039820 c.885T>G synonymous_variant 0.24
clpC1 4039831 c.874T>C synonymous_variant 0.27
clpC1 4039844 c.861C>T synonymous_variant 0.27
clpC1 4039850 c.855T>C synonymous_variant 0.26
clpC1 4039865 c.840T>C synonymous_variant 0.26
clpC1 4039904 c.801A>G synonymous_variant 0.24
clpC1 4039907 c.798G>A synonymous_variant 0.23
clpC1 4039931 c.774T>C synonymous_variant 0.21
clpC1 4039934 c.771G>C synonymous_variant 0.2
clpC1 4039943 c.762G>C synonymous_variant 0.18
clpC1 4039946 c.759A>G synonymous_variant 0.19
clpC1 4039949 c.756G>C synonymous_variant 0.19
clpC1 4039952 c.753T>C synonymous_variant 0.19
clpC1 4039958 c.747G>C synonymous_variant 0.18
clpC1 4039964 c.741C>G synonymous_variant 0.18
clpC1 4039975 p.Asp244Asn missense_variant 0.19
clpC1 4039979 c.726C>G synonymous_variant 0.18
clpC1 4039982 c.723G>A synonymous_variant 0.18
clpC1 4040000 c.705C>T synonymous_variant 0.18
clpC1 4040021 c.684A>C synonymous_variant 0.15
clpC1 4040024 c.681A>G synonymous_variant 0.14
clpC1 4040033 c.672G>C synonymous_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 0.99
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0