EBG00000313339 - n.2642C>T


Drug resistance types
163 Sensitive 15 RR-TB 66 HR-TB 34 MDR-TB 16 Pre-XDR-TB 0 XDR-TB 126 Other
lineage Counts
lineage Count
lineage4.3.2.1 4
lineage4.6.2.2 5
lineage5.2 2
lineage2.2.1 35
lineage2.2.1.1 6
lineage4.3.4.2 2
lineage4.8;lineage4.1 2
lineage4.8 18
lineage4.1.2.1 10
73
lineage3 12
lineage6.1.3 1
lineage6 1
lineage4 104
lineage4.3.3 3
lineage4.1.1.3 6
La3 1
lineage4.9 71
lineage2.2 4
lineage1.2.1.2 1
lineage4.2.1 3
lineage4.2.2.1 1
La1.8.1 5
lineage4.1 2
lineage4;lineage2.2 1
lineage4.9;La3 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage4.3.4.2.1 3
lineage2.2.1;La3 1
lineage4.2;La1.7 1
lineage3;lineage2.2.1 1
lineage1.2.1.1 1
lineage2.1 2
lineage4.3 1
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 1
lineage4.1.1 1
lineage4.3.4.2;lineage4.3.3 1
lineage1.1.2 4
lineage3.1.3 1
lineage4.2.2.2 1
lineage5.1.4 1
lineage4.9;lineage2.1 1
lineage4.3.2 1
lineage1.1.1 1
lineage4.4.2;lineage2.2.1 1
lineage4.3.4.1 4
lineage4.4.1.1;lineage1.2.2.1 2
lineage4.1.2 2
lineage4.4.1.2 1
lineage4.4.1.1 2
lineage4.3.4 1
lineage4.3.4.1;La1.7 1
lineage5.1.2 1
lineage4;lineage3.1 1
lineage2 1
lineage1.2.2.2 1
lineage4.5 1
lineage1.1.3.2 1
lineage4.6.1.2 1
lineage1.1.3.1 1
spoligotype Counts
spoligotype Count
None 420
Geographic prevalence
Country level data for this variant is available for 9 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR8975532 HR-TB lineage4.3.2.1 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR970413 MDR-TB lineage2.2.1 None
ERR970441 RR-TB lineage2.2.1.1 None
ERR9786597 Sensitive lineage4.6.2.2 None
ERR970445 MDR-TB lineage2.2.1 None
ERR9786592 Sensitive lineage4.3.4.2 None
ERR970443 RR-TB lineage2.2.1.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786526 Other lineage4.8;lineage4.1 None
SRR10808668 Sensitive lineage2.2.1 None
ERR9786619 Sensitive lineage4.8 None
ERR9786656 Sensitive lineage4.1.2.1 None
ERR9786843 Other None
ERR990545 Other lineage3 None
SRR10808490 Sensitive lineage2.2.1.1 None
ERR9787256 Other lineage6.1.3 None
ERR9787362 Sensitive lineage6 None
SRR10315567 Other lineage2.2.1 None
SRR10808399 Sensitive lineage4 None
SRR11349186 MDR-TB lineage4.3.3 None
SRR10808805 Sensitive None
SRR10809074 Sensitive lineage4 None
SRR1169306 Other None
SRR1158918 Sensitive lineage4 None
SRR11444077 Sensitive lineage4.6.2.2 None
SRR1167271 MDR-TB lineage4.1.1.3 None
SRR1167384 Other lineage4 None
SRR1169249 Other La3 None
SRR1173587 Pre-XDR-TB lineage4.1.1.3 None
SRR1173568 Other lineage4.9 None
SRR1173777 Other lineage4 None
SRR1175496 HR-TB lineage4.9 None
SRR1175507 MDR-TB lineage4 None
SRR1175500 MDR-TB lineage4 None
SRR1180996 HR-TB lineage4 None
SRR1175508 Other lineage4.9 None
SRR1180137 Other lineage2.2.1 None
SRR1180270 Other lineage2.2.1 None
SRR1181289 Other lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1181251 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR12006550 Other lineage1.2.1.2 None
SRR1183145 Other lineage2.2.1 None
SRR1183965 Sensitive lineage4.9 None
SRR11972227 Pre-XDR-TB lineage2.2.1 None
SRR12416824 HR-TB None
SRR13837571 Sensitive lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR13837992 Sensitive lineage4.9 None
SRR14801749 Sensitive None
SRR25827682 Other None
SRR16149133 MDR-TB lineage4.2.2.1 None
SRR1791747 Other La1.8.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR5709926 MDR-TB lineage2.2.1 None
SRR19295647 Sensitive lineage4.9 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
ERR11068381 Sensitive lineage3 None
SRR8692807 Other lineage4.9 None
ERR11081258 Other lineage4.8 None
SRR12708416 Sensitive lineage4.1 None
SRR8692790 RR-TB lineage4 None
SRR8692854 Other lineage4.9 None
SRR8692812 Other lineage4.9 None
SRR8692822 Other lineage4.9 None
SRR8692810 Other lineage4.9 None
SRR8692858 Sensitive lineage4.9 None
SRR8692868 Sensitive lineage4.9 None
SRR8692879 HR-TB lineage4.9 None
SRR8692881 Other lineage4.9 None
SRR8692908 Other lineage4.9 None
SRR8692885 Other lineage4.9 None
SRR8692897 Other lineage4.9 None
SRR8692905 HR-TB None
SRR8692893 Other lineage4.9 None
SRR8692778 Other lineage4.9 None
SRR8692800 Other lineage4 None
SRR8692782 Other lineage4.9 None
SRR8692863 Other lineage4;lineage2.2 None
SRR8692824 Other lineage4.9 None
SRR8692825 Other lineage4.9 None
SRR8692828 Other lineage4.9 None
SRR8692882 HR-TB lineage4.9 None
SRR8692776 Other lineage4.9 None
SRR8692907 Other lineage4.9 None
SRR8692899 Other lineage4.9 None
SRR8692791 Other lineage4.9 None
SRR8692887 Other None
SRR8692832 Other lineage4.9 None
SRR21732925 Other lineage3 None
SRR3675488 HR-TB None
SRR26399973 Other lineage4.9;La3 None
SRR26159053 Sensitive lineage4.9 None
SAMEA3501065 RR-TB lineage4.8 None
SRR3675477 Other lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
SAMN02585910 Other lineage2.2.1 None
ERR161034 Other lineage4.3.4.2.1 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR23961559 Other lineage4.2;La1.7 None
SRR28119823 Sensitive lineage4.9 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR3675455 Sensitive lineage4 None
SRR3675473 Sensitive lineage4.9 None
SRR3675472 Sensitive lineage4.9 None
ERR1035300 HR-TB lineage4.1.2.1 br
ERR158583 HR-TB None
ERR4814396 Sensitive lineage4.1.1.3 None
SRR3675229 Other lineage4 None
SRR3675210 Sensitive lineage4.9 None
SRR3675222 Other None
SRR3675209 Sensitive lineage4.9 None
ERR3275450 Other lineage4 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675249 Sensitive lineage4.9 None
SRR3675246 Sensitive lineage4 None
ERR702405 Sensitive lineage2.1 None
SRR3675266 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR3675501 HR-TB None
SRR3675292 Sensitive lineage4 None
ERR176568 Other lineage4.3 None
SRR3675279 Other None
SRR3675283 Sensitive lineage4.9 None
ERR176643 HR-TB None
SRR3675312 HR-TB lineage4 None
SRR3675387 Sensitive None
SRR3675318 Other lineage4.9 None
ERR176751 HR-TB None
SRR3675502 Other None
ERR4816100 Sensitive lineage4.1.3;lineage4.1.2.1;lineage1.1.2 None
SAMEA3501015 Other lineage4.8 None
SRR3675522 Other None
SRR3675537 Sensitive lineage4.9 None
SRR3675542 Other lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675514 Sensitive lineage4.9 None
SRR3675550 Other None
ERR4816113 Sensitive lineage4.1.1 None
SRR3675548 Sensitive lineage4.9 None
SRR3675553 Sensitive lineage4.9 None
ERR212001 HR-TB None
ERR1034902 Pre-XDR-TB lineage4.3.4.2 pt
ERR212033 HR-TB None
ERR2229147 Other lineage4.8 None
SRR3675577 Sensitive lineage4.9 None
ERR2228900 RR-TB lineage4.8 None
ERR1034911 MDR-TB lineage4.3.4.2;lineage4.3.3 pt
ERR4816656 HR-TB None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR2228899 RR-TB lineage4.8 None
SRR5341384 Sensitive lineage4.9 None
ERR553132 MDR-TB lineage4.1.2.1 None
ERR245675 Sensitive lineage1.1.2 None
SAMEA3450033 Other lineage4.8 None
ERR4818110 Sensitive lineage4.9 None
ERR234659 HR-TB None
ERR4817998 Other lineage3 None
ERR2513121 Sensitive lineage3.1.3 None
ERR1035162 Other None
ERR4818929 HR-TB None
SAMEA3501063 RR-TB lineage4.8 None
ERR4819051 Other lineage4 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR2513470 Other lineage4.2.2.2 None
SRR5341453 Sensitive None
ERR2512770 Other lineage4.2.1 None
ERR2513283 Other lineage5.1.4 None
SRR5341366 Sensitive lineage4 None
ERR2512929 Sensitive lineage3 None
SAMEA3501067 RR-TB lineage4.8 None
ERR2513724 Sensitive lineage4.3.2.1 None
SRR5341387 Other lineage4 None
SRR5341418 Other None
SRR5341395 Sensitive lineage3 None
SRR5341396 Other lineage4 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341425 Other lineage4 None
ERR4819678 Sensitive lineage4.9 None
SRR6397402 Sensitive lineage2.2.1 ca
SRR5341437 Sensitive lineage4.9 None
SRR5341298 Sensitive lineage4 None
SRR5341455 Sensitive lineage4 None
SRR5341296 Sensitive lineage4.9 None
SRR6397645 Sensitive lineage2.2.1 ca
SRR5341299 Sensitive lineage4 None
SRR5341300 Other lineage4 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR5341308 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
SRR5341302 HR-TB None
SRR6397541 Sensitive lineage2.2.1 ca
ERR2446382 Other lineage4 None
ERR1023509 Other None
SAMEA3501070 RR-TB lineage4.8 None
SRR5341319 Other lineage3 None
SRR5341323 Sensitive lineage4 None
SRR5341310 Other lineage1.1.2 None
ERR4820043 Sensitive lineage4.1.2.1 None
SRR5341332 Pre-XDR-TB lineage3 None
SRR5341345 Sensitive lineage4.9 None
SRR5341333 HR-TB None
SRR5341467 Other lineage4 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341461 Sensitive lineage4 None
ERR2517475 Other lineage4 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
SRR5341469 Other lineage4 None
SAMEA3501052 RR-TB lineage4.8 None
SRR6045503 HR-TB None
ERR502511 Sensitive lineage4.9;lineage2.1 None
SAMN02403525 Pre-XDR-TB lineage4.1.1.3 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4821655 Sensitive lineage4 None
SRR6045519 HR-TB None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6044819 Sensitive lineage4.9 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6045706 Sensitive lineage4 None
SRR6044780 Other lineage4.9 None
SRR6045892 Sensitive None
SRR6044835 Sensitive lineage4 None
SRR6045050 Sensitive lineage4.3.2.1 None
SRR6044876 Sensitive lineage4 None
SRR6045010 Other lineage4 None
SRR6046611 HR-TB lineage4.9 None
SRR6045158 Other lineage4.9 None
SRR6045371 Sensitive lineage4.2.1 None
SRR6046225 HR-TB None
SRR6046245 Other lineage4.9 None
ERR1213875 Sensitive lineage4.3.3 de
ERR1213930 Other lineage4.3.2 pe
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046362 HR-TB None
SRR6046460 HR-TB None
SRR6046897 Sensitive lineage4 None
SRR6046644 HR-TB None
SRR6046863 Sensitive lineage1.1.2 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR4832007 MDR-TB lineage2.2.1.1 None
SRR6511621 HR-TB None
ERR4831546 HR-TB lineage2.2 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831618 MDR-TB lineage2.1 None
ERR4831638 Sensitive None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831741 MDR-TB lineage1.1.1 None
ERR4831657 MDR-TB lineage2.2.1 None
ERR4831745 MDR-TB lineage2.2.1.1 None
ERR4831841 HR-TB lineage4.4.2;lineage2.2.1 None
ERR4831839 MDR-TB lineage2.2.1 None
ERR4816110 Sensitive lineage4.9 gb
SRR6789624 MDR-TB lineage4.1 None
SRR6832787 RR-TB lineage2.2.1 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR6981961 Sensitive lineage2.2.1 None
ERR11465711 Other lineage4.4.1.1;lineage1.2.2.1 None
SRR6832249 Other lineage2.2.1 None
SRR6982365 Other lineage2.2.1 None
ERR11465801 Other lineage4.3.4.1 None
ERR502510 Sensitive lineage4 None
ERR502889 Other None
ERR502943 HR-TB None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970980 Other lineage4.1.2 None
SRR7535082 Sensitive lineage4 None
SRR9970979 Sensitive lineage4.8 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971114 Other lineage2.2.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9971113 Other lineage2.2.1 None
SRR9971112 Other lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323107 Other lineage4 None
ERR323066 Sensitive lineage4 None
ERR067681 HR-TB None
ERR323085 Sensitive lineage4 None
ERR067699 HR-TB lineage4 None
ERR1023525 HR-TB lineage4 None
ERR1034634 HR-TB None
ERR1034652 Other None
ERR1035122 Sensitive None
ERR11466044 Other lineage4.1.1.3 None
ERR11465360 MDR-TB lineage4.3.4.1 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR1063883 Sensitive lineage4 None
ERR11043831 MDR-TB lineage4.4.1.1 None
ERR1063896 Sensitive None
ERR10796631 Other lineage4.3.4 None
ERR133986 HR-TB None
ERR133825 Sensitive lineage4 None
ERR1213932 Sensitive lineage4.1.2.1 None
ERR323115 Sensitive lineage4 None
ERR137286 Sensitive lineage4 None
ERR11465714 Other lineage4.4.1.1;lineage1.2.2.1 None
ERR12015086 Other lineage4.8 None
ERR12015084 Other lineage4.8 None
ERR3283030 HR-TB lineage4.9 None
ERR3273109 MDR-TB lineage4 None
ERR11465802 Other lineage4.3.4.1;La1.7 None
ERR3283014 HR-TB None
ERR3283028 Other None
ERR3283032 HR-TB None
ERR349265 Sensitive lineage4 None
ERR3283031 HR-TB None
ERR3283047 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR3283040 HR-TB None
ERR3439432 Other None
ERR349264 Sensitive lineage4 None
ERR349299 Sensitive lineage4 None
ERR349266 Sensitive lineage4.9 None
ERR349298 Sensitive lineage4 None
ERR349296 Sensitive lineage4 None
ERR349330 Sensitive lineage4 None
ERR349300 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4 None
ERR363426 Sensitive lineage4 None
ERR363437 Sensitive lineage4 None
ERR363445 Sensitive lineage4 None
ERR363446 Sensitive lineage4 None
ERR363453 Sensitive lineage4 None
ERR363447 Sensitive lineage4 None
ERR363449 Sensitive lineage4 None
ERR363502 Sensitive lineage4 None
ERR363456 Sensitive lineage4 None
ERR363479 Sensitive lineage4 None
ERR363499 Sensitive lineage4 None
ERR363498 Sensitive lineage4 None
ERR363474 Sensitive lineage4 None
ERR363490 Sensitive lineage4 None
ERR363500 Sensitive lineage4 None
ERR363506 Sensitive lineage4 None
ERR3639809 MDR-TB lineage4.4.1.1 None
ERR363509 Sensitive lineage4 None
ERR369159 Sensitive lineage4 None
ERR369151 Sensitive lineage4.9 None
ERR369158 Sensitive lineage4 None
ERR369156 Sensitive lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR369162 Sensitive lineage4 None
ERR369160 Sensitive lineage4.9 None
ERR369163 Sensitive lineage4 None
ERR373947 Sensitive lineage4 None
ERR373945 HR-TB lineage4 None
ERR373946 Sensitive lineage4 None
ERR3797015 HR-TB None
ERR3797067 Other La1.8.1 None
ERR3797048 HR-TB None
ERR3797060 Other La1.8.1 None
ERR3797019 Other La1.8.1 None
ERR3797063 HR-TB None
ERR3797065 MDR-TB lineage4 None
ERR400320 Sensitive lineage4 None
ERR3797087 Sensitive lineage4 None
ERR3797073 HR-TB La1.8.1 None
ERR3797080 HR-TB lineage4.9 None
ERR3797079 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR400326 Sensitive lineage4 None
ERR400336 Sensitive lineage4 None
ERR400529 Other lineage3 None
ERR400345 Other lineage4 None
ERR4024991 Other None
ERR400538 RR-TB lineage5.1.2 None
ERR403298 HR-TB lineage4 None
ERR4188247 HR-TB None
ERR405209 Sensitive lineage4 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4178226 Sensitive lineage4 None
ERR4178309 Other lineage4.1.2.1 None
ERR4796254 Sensitive lineage4 None
ERR4769474 HR-TB lineage4 None
ERR4797184 Sensitive lineage4 None
ERR4796929 Sensitive lineage4 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797201 Other lineage1.2.2.2 None
ERR4797350 Sensitive lineage4.9 None
ERR4797313 HR-TB None
ERR4797264 Sensitive None
ERR4797474 Other None
ERR4798431 HR-TB None
ERR4797588 MDR-TB lineage3 None
ERR4798099 Other None
ERR4798406 HR-TB None
ERR4811031 Sensitive lineage4.5 None
ERR4799378 Sensitive lineage4 None
ERR4799547 Sensitive lineage2.2.1 None
ERR12015085 Other lineage4.8 None
ERR4800341 Other lineage3 None
ERR4812155 Sensitive None
ERR4811030 Sensitive None
ERR6866547 Sensitive lineage4 None
ERR6865513 Other lineage4.1.2.1 None
ERR6866022 Other None
ERR6358979 Other None
ERR6865502 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR736856 HR-TB lineage4 None
ERR736834 Sensitive lineage4 None
ERR736848 HR-TB None
ERR6866639 Other None
ERR736872 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR7821126 Sensitive lineage1.1.3.2 None
ERR2124083 HR-TB lineage4.6.1.2 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR7821163 Other lineage2.2.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None