Run ID: SRR8692782
Sample name:
Date: 13-08-2023 20:38:53
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rplC | 801268 | p.Cys154Arg | missense_variant | 0.75 | linezolid |
panD | 4043931 | p.Met117Ile | missense_variant | 0.12 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5189 | c.-51C>A | upstream_gene_variant | 0.17 |
gyrB | 5803 | c.564A>G | synonymous_variant | 0.12 |
gyrB | 5806 | c.567C>G | synonymous_variant | 0.14 |
gyrB | 5807 | p.Val190Ile | missense_variant | 0.14 |
gyrB | 5818 | c.579G>A | synonymous_variant | 0.13 |
gyrB | 5824 | c.585A>G | synonymous_variant | 0.13 |
gyrB | 5833 | c.594G>C | synonymous_variant | 0.2 |
gyrB | 5839 | c.600C>G | synonymous_variant | 0.18 |
gyrB | 5848 | c.609G>C | synonymous_variant | 0.15 |
gyrB | 5858 | p.Asn207Glu | missense_variant | 0.17 |
gyrB | 5873 | c.634_636delAGGinsCGC | synonymous_variant | 0.2 |
gyrB | 5878 | c.639G>C | synonymous_variant | 0.2 |
gyrB | 5879 | p.Thr214Ala | missense_variant | 0.2 |
gyrB | 5883 | p.Gln215Pro | missense_variant | 0.2 |
gyrB | 5887 | p.Asp216Glu | missense_variant | 0.2 |
gyrB | 5889 | p.Glu217Ala | missense_variant | 0.2 |
gyrB | 5899 | c.660C>T | synonymous_variant | 0.22 |
gyrB | 5902 | c.663A>G | synonymous_variant | 0.2 |
gyrB | 5915 | p.Val226His | missense_variant | 0.18 |
gyrB | 6152 | p.Ala305Ser | missense_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.15 |
gyrA | 7593 | p.Arg98Ser | missense_variant | 0.17 |
gyrA | 7965 | p.Arg222Trp | missense_variant | 0.14 |
gyrA | 8353 | p.Gly351Val | missense_variant | 0.2 |
gyrA | 8676 | p.Glu459* | stop_gained | 0.17 |
gyrA | 9267 | p.Asn656Asp | missense_variant | 0.1 |
mshA | 575998 | c.651C>G | synonymous_variant | 0.15 |
mshA | 576438 | p.Ala364Glu | missense_variant | 0.22 |
rpoB | 760047 | p.Glu81* | stop_gained | 0.14 |
rpoB | 760143 | p.Val113Ile | missense_variant | 0.22 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.11 |
rpoB | 760535 | c.729C>G | synonymous_variant | 0.11 |
rpoB | 760541 | c.735G>C | synonymous_variant | 0.12 |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.12 |
rpoB | 760561 | c.757_758delCG | frameshift_variant | 0.14 |
rpoB | 760567 | p.Ser254Trp | missense_variant | 0.2 |
rpoB | 760568 | c.762_763insGC | frameshift_variant | 0.14 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.25 |
rpoB | 760601 | c.795C>T | synonymous_variant | 0.17 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.15 |
rpoB | 760625 | c.819C>G | synonymous_variant | 0.15 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.15 |
rpoB | 760677 | p.Glu291* | stop_gained | 0.18 |
rpoB | 761009 | p.Gln401His | missense_variant | 0.14 |
rpoB | 761097 | c.1291_1293delAGCinsTCG | synonymous_variant | 0.13 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.13 |
rpoB | 761132 | c.1326G>T | synonymous_variant | 0.14 |
rpoB | 761133 | c.1327T>C | synonymous_variant | 0.14 |
rpoB | 761147 | c.1341C>T | synonymous_variant | 0.17 |
rpoB | 761150 | c.1344A>T | synonymous_variant | 0.15 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.14 |
rpoB | 761180 | c.1374A>C | synonymous_variant | 0.17 |
rpoB | 761189 | c.1383T>C | synonymous_variant | 0.18 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.2 |
rpoB | 761198 | c.1392G>T | synonymous_variant | 0.2 |
rpoB | 761217 | p.Pro471Ser | missense_variant | 0.2 |
rpoB | 761302 | p.Arg499Leu | missense_variant | 0.18 |
rpoB | 761705 | c.1899C>T | synonymous_variant | 0.13 |
rpoB | 761712 | p.Val636Ile | missense_variant | 0.13 |
rpoB | 761723 | p.Glu639Asp | missense_variant | 0.14 |
rpoB | 761724 | p.Glu640Lys | missense_variant | 0.14 |
rpoB | 761728 | p.Ser641Thr | missense_variant | 0.13 |
rpoB | 761732 | c.1926C>T | synonymous_variant | 0.12 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.12 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.11 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.12 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.12 |
rpoB | 761785 | p.Thr660Ser | missense_variant | 0.12 |
rpoB | 761791 | p.Arg662Gln | missense_variant | 0.12 |
rpoB | 761999 | c.2193G>C | synonymous_variant | 0.14 |
rpoB | 762002 | c.2196C>G | synonymous_variant | 0.14 |
rpoB | 762047 | c.2241G>A | synonymous_variant | 0.21 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.22 |
rpoB | 762065 | c.2259T>C | synonymous_variant | 0.21 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.21 |
rpoB | 762086 | c.2280G>C | synonymous_variant | 0.21 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.22 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.25 |
rpoB | 762122 | c.2316C>T | synonymous_variant | 0.19 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.2 |
rpoB | 762137 | c.2331C>T | synonymous_variant | 0.14 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.18 |
rpoC | 762959 | c.-411G>C | upstream_gene_variant | 0.2 |
rpoC | 762962 | c.-408C>T | upstream_gene_variant | 0.25 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.21 |
rpoC | 762989 | c.-381G>A | upstream_gene_variant | 0.16 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.15 |
rpoC | 763004 | c.-366G>A | upstream_gene_variant | 0.14 |
rpoC | 763007 | c.-363C>T | upstream_gene_variant | 0.15 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.14 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.14 |
rpoC | 763049 | c.-321G>A | upstream_gene_variant | 0.16 |
rpoC | 763053 | c.-317_-315delTTGinsCTC | upstream_gene_variant | 0.15 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.15 |
rpoC | 763076 | c.-294C>G | upstream_gene_variant | 0.15 |
rpoC | 763079 | c.-291C>G | upstream_gene_variant | 0.15 |
rpoC | 763082 | c.-288C>T | upstream_gene_variant | 0.16 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.16 |
rpoC | 763103 | c.-267G>C | upstream_gene_variant | 0.14 |
rpoC | 763375 | c.6C>A | synonymous_variant | 0.14 |
rpoC | 763423 | p.Glu18Asp | missense_variant | 0.11 |
rpoC | 763430 | c.61_63delAGGinsCGC | synonymous_variant | 0.11 |
rpoC | 763435 | p.Gln22His | missense_variant | 0.11 |
rpoC | 763443 | p.Tyr25Phe | missense_variant | 0.12 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.11 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.11 |
rpoC | 765406 | c.2037G>T | synonymous_variant | 0.24 |
rpoC | 765731 | p.Ala788Ser | missense_variant | 0.14 |
rpoC | 765772 | c.2403C>G | synonymous_variant | 0.15 |
rpoC | 765778 | c.2409C>G | synonymous_variant | 0.15 |
rpoC | 765779 | p.Asp804Lys | missense_variant | 0.15 |
rpoC | 765800 | p.Phe811Leu | missense_variant | 0.13 |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.14 |
rpoC | 765814 | c.2445A>C | synonymous_variant | 0.14 |
rpoC | 765820 | c.2451G>C | synonymous_variant | 0.14 |
rpoC | 765823 | c.2454C>G | synonymous_variant | 0.14 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.14 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.13 |
rpoC | 765861 | p.Phe831Tyr | missense_variant | 0.2 |
rpoC | 765875 | p.Val836Ile | missense_variant | 0.15 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.13 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.14 |
rpoC | 766246 | p.Gln959His | missense_variant | 0.13 |
rpoC | 766444 | c.3075C>T | synonymous_variant | 0.17 |
rpoC | 767002 | c.3633G>C | synonymous_variant | 0.12 |
rpoC | 767011 | c.3642G>A | synonymous_variant | 0.12 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.2 |
rpoC | 767023 | c.3654C>T | synonymous_variant | 0.27 |
rpoC | 767035 | c.3666G>C | synonymous_variant | 0.27 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.33 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.33 |
rpoC | 767106 | p.Asn1246Met | missense_variant | 0.36 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.35 |
rpoC | 767155 | c.3786C>G | synonymous_variant | 0.29 |
rpoC | 767162 | p.Asn1265Ala | missense_variant | 0.27 |
rpoC | 767173 | c.3804C>G | synonymous_variant | 0.29 |
rpoC | 767174 | p.Asn1269Asp | missense_variant | 0.29 |
rpoC | 767180 | p.Ala1271Gln | missense_variant | 0.29 |
rpoC | 767185 | c.3816G>C | synonymous_variant | 0.29 |
rpoC | 767186 | p.Gln1273Asn | missense_variant | 0.29 |
rpoC | 767191 | c.3822C>G | synonymous_variant | 0.31 |
rpoC | 767197 | c.3828G>A | synonymous_variant | 0.27 |
rpoC | 767221 | c.3852C>G | synonymous_variant | 0.29 |
rpoC | 767230 | c.3861G>C | synonymous_variant | 0.23 |
rpoC | 767233 | c.3864T>C | synonymous_variant | 0.23 |
rpoC | 767237 | p.Asp1290Tyr | missense_variant | 0.17 |
mmpL5 | 776981 | c.1500G>T | synonymous_variant | 0.12 |
mmpL5 | 777696 | p.Ala262Val | missense_variant | 0.15 |
mmpL5 | 777765 | p.Gly239Val | missense_variant | 0.21 |
mmpR5 | 778451 | c.-539C>T | upstream_gene_variant | 0.17 |
mmpS5 | 778872 | p.Leu12Met | missense_variant | 0.14 |
mmpL5 | 779298 | c.-818G>A | upstream_gene_variant | 0.15 |
mmpR5 | 779305 | p.Glu106Lys | missense_variant | 0.15 |
rpsL | 781652 | c.93T>C | synonymous_variant | 0.12 |
rpsL | 781658 | c.99A>G | synonymous_variant | 0.11 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.11 |
rplC | 800639 | c.-170C>A | upstream_gene_variant | 0.17 |
fbiC | 1303039 | p.Val37Phe | missense_variant | 0.12 |
fbiC | 1303306 | p.Asp126Tyr | missense_variant | 0.2 |
fbiC | 1304191 | p.Ala421Thr | missense_variant | 0.23 |
fbiC | 1304518 | p.Ala530Thr | missense_variant | 0.17 |
fbiC | 1304551 | p.Gly541Cys | missense_variant | 0.22 |
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.15 |
fbiC | 1304634 | c.1704C>G | synonymous_variant | 0.17 |
fbiC | 1304639 | p.Arg570Leu | missense_variant | 0.14 |
fbiC | 1304646 | c.1716T>C | synonymous_variant | 0.12 |
fbiC | 1304658 | c.1728C>G | synonymous_variant | 0.11 |
fbiC | 1304672 | p.Val581Ala | missense_variant | 0.11 |
fbiC | 1304676 | c.1746A>C | synonymous_variant | 0.11 |
fbiC | 1304703 | c.1773C>G | synonymous_variant | 0.12 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.15 |
fbiC | 1304724 | c.1794A>G | synonymous_variant | 0.15 |
fbiC | 1304727 | c.1797A>C | synonymous_variant | 0.15 |
fbiC | 1304742 | c.1812T>C | synonymous_variant | 0.17 |
fbiC | 1304748 | c.1818T>C | synonymous_variant | 0.14 |
fbiC | 1304799 | c.1869G>C | synonymous_variant | 0.11 |
fbiC | 1304808 | c.1878C>G | synonymous_variant | 0.11 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.12 |
fbiC | 1304832 | c.1902C>G | synonymous_variant | 0.11 |
fbiC | 1305018 | c.2088C>A | synonymous_variant | 0.17 |
Rv1258c | 1406406 | p.Pro312Gln | missense_variant | 0.14 |
Rv1258c | 1406528 | c.813C>A | synonymous_variant | 0.14 |
Rv1258c | 1406598 | p.Pro248Leu | missense_variant | 0.18 |
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 0.9 |
Rv1258c | 1407197 | c.144C>A | synonymous_variant | 0.15 |
Rv1258c | 1407270 | p.Gly24Asp | missense_variant | 0.13 |
embR | 1416814 | c.534G>A | synonymous_variant | 0.15 |
atpE | 1461000 | c.-45C>A | upstream_gene_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471979 | n.134T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1471986 | n.141C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472489 | n.644A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472850 | n.1005T>C | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473731 | n.74T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473746 | n.89T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473770 | n.113T>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473814 | n.157A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473816 | n.159C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473828 | n.171G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473829 | n.172G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473830 | n.173T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473831 | n.174G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474066 | n.409G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474672 | n.1015C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474673 | n.1016T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474676 | n.1019T>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474709 | n.1053delT | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474714 | n.1058delT | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474830 | n.1173A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475343 | n.1686A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475358 | n.1701T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475363 | n.1706C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475380 | n.1723C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475381 | n.1724G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475382 | n.1725A>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475395 | n.1738T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475396 | n.1739C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475397 | n.1740G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475460 | n.1803A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475479 | n.1822C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475480 | n.1823A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475531 | n.1874C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475544 | n.1887A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475574 | n.1917C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475753 | n.2096C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475759 | n.2102C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475762 | n.2105G>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475765 | n.2108A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475775 | n.2118G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475991 | n.2334T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475995 | n.2338G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476034 | n.2377C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476035 | n.2378G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476056 | n.2399G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476085 | n.2428G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476088 | n.2431A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476110 | n.2453G>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476132 | n.2475G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476251 | n.2594T>G | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476256 | n.2599A>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476299 | n.2642C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476347 | n.2690C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476583 | n.2926G>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.5 |
fabG1 | 1673186 | c.-254C>T | upstream_gene_variant | 0.13 |
fabG1 | 1673201 | c.-239G>T | upstream_gene_variant | 0.14 |
fabG1 | 1673389 | c.-51C>G | upstream_gene_variant | 0.15 |
fabG1 | 1673401 | c.-39G>T | upstream_gene_variant | 0.15 |
fabG1 | 1673421 | c.-19G>T | upstream_gene_variant | 0.17 |
inhA | 1674726 | c.525G>T | synonymous_variant | 0.14 |
inhA | 1674909 | c.708G>C | synonymous_variant | 0.11 |
rpsA | 1833676 | c.135A>G | synonymous_variant | 0.14 |
rpsA | 1833697 | c.156C>G | synonymous_variant | 0.14 |
rpsA | 1833727 | c.186G>A | synonymous_variant | 0.18 |
rpsA | 1833734 | p.Ala65Ser | missense_variant | 0.19 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.21 |
rpsA | 1833760 | c.219C>T | synonymous_variant | 0.22 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.22 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.22 |
rpsA | 1833793 | c.252C>T | synonymous_variant | 0.22 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.23 |
rpsA | 1833808 | c.267G>C | synonymous_variant | 0.23 |
rpsA | 1833811 | c.270G>T | synonymous_variant | 0.24 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.26 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.26 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.26 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.25 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.23 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.22 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.22 |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.16 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.17 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.11 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.12 |
rpsA | 1834456 | c.915T>G | synonymous_variant | 0.12 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.13 |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.12 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.12 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.15 |
tlyA | 1918518 | c.579C>A | synonymous_variant | 0.13 |
ndh | 2101727 | p.Arg439Leu | missense_variant | 0.2 |
ndh | 2102083 | c.960G>T | synonymous_variant | 0.15 |
ndh | 2102122 | c.921C>A | synonymous_variant | 0.13 |
katG | 2154081 | c.2031C>A | synonymous_variant | 0.25 |
katG | 2154131 | p.Leu661Met | missense_variant | 0.22 |
katG | 2154132 | p.Asn660Lys | missense_variant | 0.22 |
PPE35 | 2167903 | p.Gly904Ser | missense_variant | 0.17 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 0.22 |
PPE35 | 2168920 | p.Val565Phe | missense_variant | 0.12 |
PPE35 | 2168984 | c.1629G>T | synonymous_variant | 0.14 |
Rv1979c | 2222163 | c.1002G>T | synonymous_variant | 0.13 |
Rv1979c | 2222298 | c.867G>T | synonymous_variant | 0.25 |
Rv1979c | 2222912 | p.Ala85Ser | missense_variant | 0.17 |
Rv1979c | 2223341 | c.-177C>A | upstream_gene_variant | 0.15 |
kasA | 2518101 | c.-14G>T | upstream_gene_variant | 0.17 |
kasA | 2518822 | c.708C>G | synonymous_variant | 0.11 |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.11 |
kasA | 2518828 | c.714G>C | synonymous_variant | 0.11 |
kasA | 2518846 | c.732G>C | synonymous_variant | 0.12 |
kasA | 2518849 | c.735G>C | synonymous_variant | 0.14 |
kasA | 2518850 | p.Met246Leu | missense_variant | 0.12 |
kasA | 2518853 | p.Leu247Ile | missense_variant | 0.13 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.21 |
kasA | 2518879 | c.765A>G | synonymous_variant | 0.2 |
kasA | 2519083 | c.969C>G | synonymous_variant | 0.17 |
kasA | 2519095 | c.981C>G | synonymous_variant | 0.15 |
kasA | 2519099 | p.Ala329Ser | missense_variant | 0.15 |
kasA | 2519105 | p.Cys331Val | missense_variant | 0.15 |
kasA | 2519110 | p.Asp332Glu | missense_variant | 0.14 |
kasA | 2519113 | p.Gln333His | missense_variant | 0.17 |
kasA | 2519137 | c.1023T>G | synonymous_variant | 0.17 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.17 |
kasA | 2519164 | c.1050C>G | synonymous_variant | 0.2 |
kasA | 2519170 | c.1056G>C | synonymous_variant | 0.2 |
kasA | 2519173 | c.1059C>G | synonymous_variant | 0.2 |
kasA | 2519180 | p.Val356Ile | missense_variant | 0.29 |
kasA | 2519185 | c.1071C>G | synonymous_variant | 0.29 |
eis | 2714892 | c.441G>A | synonymous_variant | 0.22 |
eis | 2715406 | c.-74G>T | upstream_gene_variant | 0.25 |
folC | 2746950 | p.Ala217Thr | missense_variant | 0.12 |
folC | 2747159 | p.Pro147Leu | missense_variant | 0.22 |
pepQ | 2859329 | p.Arg364Trp | missense_variant | 0.17 |
Rv2752c | 3064577 | p.Lys539Glu | missense_variant | 0.11 |
Rv2752c | 3064773 | c.1419C>A | synonymous_variant | 0.13 |
Rv2752c | 3064922 | p.Glu424Lys | missense_variant | 0.12 |
Rv2752c | 3065955 | p.Leu79Phe | missense_variant | 0.12 |
thyX | 3067226 | p.Glu240Asp | missense_variant | 0.2 |
thyX | 3067714 | p.Val78Leu | missense_variant | 0.15 |
ald | 3087058 | p.Ala80Glu | missense_variant | 0.18 |
ald | 3087113 | c.294C>T | synonymous_variant | 0.25 |
ald | 3087358 | p.Gly180Val | missense_variant | 0.12 |
ald | 3087638 | c.819C>A | synonymous_variant | 0.2 |
fbiD | 3339047 | c.-71G>T | upstream_gene_variant | 0.13 |
fbiD | 3339139 | p.Gly8Cys | missense_variant | 0.14 |
Rv3083 | 3448804 | p.Gly101Cys | missense_variant | 0.13 |
Rv3083 | 3449000 | p.Pro166Gln | missense_variant | 0.17 |
Rv3083 | 3449713 | p.Ala404Ser | missense_variant | 0.18 |
fprA | 3474271 | p.Gln89* | stop_gained | 0.17 |
fprA | 3474670 | p.Asp222His | missense_variant | 0.11 |
whiB7 | 3568692 | c.-13G>T | upstream_gene_variant | 0.12 |
fbiB | 3642652 | p.Phe373Ser | missense_variant | 0.22 |
fbiB | 3642753 | p.Leu407Met | missense_variant | 0.29 |
ddn | 3986645 | c.-199G>A | upstream_gene_variant | 0.25 |
ddn | 3986648 | c.-196C>G | upstream_gene_variant | 0.23 |
ddn | 3986659 | c.-185A>G | upstream_gene_variant | 0.21 |
ddn | 3986661 | c.-183C>A | upstream_gene_variant | 0.21 |
ddn | 3986667 | c.-177_-176delCTinsAC | upstream_gene_variant | 0.19 |
ddn | 3986696 | c.-148G>C | upstream_gene_variant | 0.19 |
ddn | 3986703 | c.-141_-140delTCinsAG | upstream_gene_variant | 0.14 |
ddn | 3987003 | p.Arg54Cys | missense_variant | 0.17 |
clpC1 | 4038710 | c.1995G>C | synonymous_variant | 0.11 |
clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.11 |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.11 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.11 |
clpC1 | 4038779 | c.1926C>G | synonymous_variant | 0.12 |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.13 |
clpC1 | 4039183 | c.1522T>C | synonymous_variant | 0.18 |
clpC1 | 4039187 | c.1518G>C | synonymous_variant | 0.18 |
clpC1 | 4039200 | p.Ala502Asp | missense_variant | 0.12 |
clpC1 | 4039208 | c.1497C>G | synonymous_variant | 0.19 |
clpC1 | 4039220 | c.1485G>T | synonymous_variant | 0.14 |
clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.14 |
clpC1 | 4039262 | c.1443C>T | synonymous_variant | 0.14 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.13 |
clpC1 | 4039286 | c.1419T>C | synonymous_variant | 0.12 |
clpC1 | 4039289 | c.1416T>C | synonymous_variant | 0.12 |
clpC1 | 4039292 | c.1413C>T | synonymous_variant | 0.12 |
clpC1 | 4039295 | c.1410A>C | synonymous_variant | 0.12 |
clpC1 | 4039310 | c.1395A>G | synonymous_variant | 0.16 |
clpC1 | 4039313 | c.1392C>G | synonymous_variant | 0.16 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.18 |
clpC1 | 4039328 | c.1377A>G | synonymous_variant | 0.14 |
clpC1 | 4039382 | c.1323C>G | synonymous_variant | 0.17 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.17 |
clpC1 | 4039394 | c.1311G>C | synonymous_variant | 0.12 |
clpC1 | 4039397 | c.1308A>G | synonymous_variant | 0.12 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.14 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.13 |
clpC1 | 4039415 | p.Glu430Asp | missense_variant | 0.14 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.14 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.15 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 0.15 |
clpC1 | 4039454 | c.1251A>T | synonymous_variant | 0.15 |
clpC1 | 4039640 | c.1065C>G | synonymous_variant | 0.11 |
clpC1 | 4039649 | c.1056G>C | synonymous_variant | 0.11 |
clpC1 | 4039652 | c.1053G>C | synonymous_variant | 0.11 |
clpC1 | 4039661 | c.1044T>C | synonymous_variant | 0.11 |
clpC1 | 4039664 | c.1041G>C | synonymous_variant | 0.11 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.14 |
clpC1 | 4039718 | c.987C>G | synonymous_variant | 0.12 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.12 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.13 |
clpC1 | 4040551 | c.154T>C | synonymous_variant | 0.12 |
clpC1 | 4040558 | c.147G>C | synonymous_variant | 0.14 |
clpC1 | 4040561 | c.144A>G | synonymous_variant | 0.14 |
clpC1 | 4040573 | c.132T>C | synonymous_variant | 0.14 |
clpC1 | 4040579 | c.126A>G | synonymous_variant | 0.13 |
clpC1 | 4040582 | c.123G>C | synonymous_variant | 0.13 |
clpC1 | 4040585 | c.120A>G | synonymous_variant | 0.14 |
clpC1 | 4040588 | c.117T>C | synonymous_variant | 0.14 |
clpC1 | 4040594 | c.111G>C | synonymous_variant | 0.14 |
clpC1 | 4040600 | c.103_105delTTAinsCTC | synonymous_variant | 0.13 |
clpC1 | 4040603 | c.102T>G | synonymous_variant | 0.13 |
clpC1 | 4040606 | c.99T>C | synonymous_variant | 0.13 |
panD | 4044365 | c.-84C>A | upstream_gene_variant | 0.18 |
embC | 4241279 | p.Val473Leu | missense_variant | 0.17 |
embC | 4242197 | p.Ala779Ser | missense_variant | 0.25 |
embA | 4242247 | c.-986C>A | upstream_gene_variant | 0.29 |
embC | 4242255 | p.Pro798Gln | missense_variant | 0.25 |
embA | 4242844 | c.-389A>G | upstream_gene_variant | 0.13 |
embA | 4243701 | p.Gly157Ser | missense_variant | 0.17 |
embA | 4245451 | p.Leu740Pro | missense_variant | 0.12 |
embB | 4245644 | c.-870C>A | upstream_gene_variant | 0.13 |
embB | 4247806 | c.1293G>A | synonymous_variant | 0.13 |
embB | 4248204 | p.Pro564His | missense_variant | 0.12 |
embB | 4248231 | p.Arg573Leu | missense_variant | 0.12 |
embB | 4248532 | p.Phe673Leu | missense_variant | 0.17 |
embB | 4249088 | p.Val859Ile | missense_variant | 0.18 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.2 |
aftB | 4267846 | p.Gly331Ser | missense_variant | 0.13 |
aftB | 4267978 | p.Pro287Thr | missense_variant | 0.25 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 0.19 |
gid | 4407535 | p.Thr223Lys | missense_variant | 0.15 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.12 |
gid | 4408263 | c.-61G>T | upstream_gene_variant | 0.22 |
gid | 4408296 | c.-94C>A | upstream_gene_variant | 0.25 |
gid | 4408331 | c.-129C>A | upstream_gene_variant | 0.22 |