EBG00000313339 - n.2872A>G


Drug resistance types
90 Sensitive 11 RR-TB 84 HR-TB 48 MDR-TB 17 Pre-XDR-TB 2 XDR-TB 88 Other
lineage Counts
lineage Count
lineage4.9 132
lineage5.2 3
lineage2.2.1;lineage4.9 2
lineage2.2.1 28
lineage4.3.2.1 5
La1.7;M.canetti;lineage4.9 2
La1.7;lineage3.1;lineage4 1
La1.8.1 13
lineage4.3.3;lineage4.8 4
lineage1;lineage4.9 1
lineage4.2.1 2
La3;lineage4.9 9
La3;lineage4.3.4 1
M.canetti;lineage1 1
lineage4.6.3;lineage4.9 1
La1.7;lineage4.9 8
lineage4.8 2
lineage4.2.2.2 1
lineage1.1.2 3
lineage2.2;lineage4 1
La1.8.1;lineage4.9 4
La1;lineage4.9 2
lineage2.2.2 1
lineage4.9;lineage9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2;lineage4 1
lineage3 3
lineage4.3.3 6
La3;lineage4 1
M.canetti;lineage4.9;lineage9 1
lineage4.1.1.3 9
lineage3.1;lineage9 1
La1.7;lineage4.9;lineage6 1
lineage4.3.4 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.3.4.2.1 4
lineage4.1.2.1 5
lineage2.2.1.1 2
lineage4.3.4.2 3
M.canetti;lineage4.2;lineage4.9 1
lineage2.1;lineage4.9 2
lineage4.1.2 2
lineage4.2.2.1 1
lineage1.2.2.2 2
lineage4.1.1.1;lineage4.9 1
lineage4.9.1 1
lineage4.3.2 2
La1.7.1;La1.7.X-unk4 1
lineage6.1.1 2
lineage4.8.1 1
lineage4 2
lineage4.9;lineage7 3
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7.1;lineage4.9 1
lineage6 1
lineage2.1 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.3.4.1 3
lineage6.1.3 3
lineage4.4.1.2 1
lineage6.1.2 1
M.canetti;lineage4.2 1
lineage3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage1.1.3.1 1
4
lineage4.6.2.2 1
lineage2.2 1
lineage2.1;lineage4.9;lineage7 1
lineage4.4.1.1 3
La1.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
lineage3.1.3 1
lineage4.8;lineage4.9 2
lineage3.1.1 1
La2;lineage2.2 1
La1.7.X-unk4;lineage4.9 1
La1.7.1 1
lineage3.1.2.1 1
La1;lineage2;lineage4.9 1
La1.7;lineage4.9;lineage7 3
La2;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1;lineage4.1.2 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.1.1.2 1
lineage4.1 1
spoligotype Counts
spoligotype Count
None 340
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR181887 Other lineage4.9 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR5341384 HR-TB lineage4.9 None
SRR6982070 Sensitive lineage2.2.1;lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR4872269 XDR-TB lineage2.2.1 None
ERR4769521 RR-TB lineage4.9 None
SRR2101529 Sensitive lineage4.3.2.1 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR3797019 Other La1.8.1 None
SRR7236177 Other La1.8.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
ERR926158 Sensitive lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR2179737 HR-TB lineage4.2.1 None
ERR3797063 Other La3;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
ERR2706950 MDR-TB lineage5.2 cd
ERR1063849 HR-TB lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR1181328 Other lineage2.2.1 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323062 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR6982342 Sensitive lineage4.3.2.1 None
ERR181744 HR-TB La3;lineage4.9 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046752 Sensitive lineage4.2.2.2 None
ERR4797193 HR-TB lineage1.1.2 None
ERR1063858 HR-TB lineage4.9 None
SRR8692863 Other lineage2.2;lineage4 None
ERR4188396 Sensitive La1.8.1;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR926164 Other lineage4.9 None
SRR21747022 Pre-XDR-TB lineage2.2.2 None
SRR6044876 Sensitive lineage4.9 None
ERR473332 Other lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR10808730 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR11972367 Sensitive lineage2.2.1 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1196478 Other lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR10315701 MDR-TB lineage4.3.3 None
ERR736856 HR-TB lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SAMN02403525 Pre-XDR-TB lineage4.1.1.3 None
SRR6982418 Sensitive lineage4.1.1.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR11775858 Sensitive lineage3 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR245675 Sensitive lineage1.1.2 None
ERR137286 Other lineage4.9 None
SRR1173587 Pre-XDR-TB lineage4.1.1.3 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR3675502 Sensitive lineage4.9 None
ERR983241 MDR-TB lineage2.2.1 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
SRR8692894 Other lineage4.9 None
SRR1792378 Other La1.8.1 None
ERR736817 HR-TB lineage4.3.4 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR11465235 Sensitive lineage4.3.4.2.1 None
ERR702405 HR-TB lineage4.9 None
SRR6982257 Sensitive lineage4.1.2.1 None
ERR3797067 Other La1.8.1 None
ERR970441 RR-TB lineage2.2.1.1 None
ERR3797079 Sensitive lineage4.9 None
ERR9786592 Other lineage4.3.4.2 None
SRR6982465 Sensitive lineage4.3.4.2 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR6866410 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
ERR4812495 Other lineage4.1.2.1 pe
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR9971319 MDR-TB lineage4.1.2 None
ERR1063883 HR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR16149126 MDR-TB lineage4.2.2.1 None
ERR4821655 HR-TB lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR2660495 Sensitive lineage1.2.2.2 None
ERR970449 RR-TB lineage4.1.1.3 None
SRR6982297 Sensitive lineage4.1.1.1;lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
ERR216928 Other lineage4.9.1 None
ERR5987249 MDR-TB lineage4.3.2 None
SRR6982508 Sensitive lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR8692782 Other lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR9787146 Sensitive lineage6.1.1 None
ERR1063846 HR-TB lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
SRR6511621 HR-TB lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
SRR6982410 Sensitive lineage4.8.1 None
SRR10808805 Other La1;lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR8692868 Other lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
SRR3675585 HR-TB lineage4.9 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR176779 HR-TB lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4796254 Other lineage4.9 None
DRR184982 Other lineage2.2.1 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR6362500 Pre-XDR-TB lineage2.2.1 None
SRR9613550 HR-TB lineage4.1.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR9787362 Sensitive lineage6 None
SRR10808399 Sensitive lineage4.9 None
ERR4187641 Sensitive La1.8.1;lineage4.9 None
ERR4187666 Other La1.8.1 None
SRR5341453 Other lineage4.9 None
ERR4831618 MDR-TB lineage2.1 None
ERR3283014 Other La3;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
ERR11465232 Sensitive lineage4.1.2.1 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR137226 MDR-TB lineage2.2.1 None
SRR19295647 HR-TB lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR3797047 MDR-TB lineage4.9 None
SRR6982138 Sensitive lineage4.1.1.3 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR6981962 Sensitive lineage4.3.2.1 None
SRR5341455 Sensitive lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
SRR1184329 Other lineage4.9 None
SRR15315871 Sensitive lineage4.9 None
ERR9786346 Sensitive lineage4.3.4.2 None
ERR3283040 HR-TB lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR1173777 Sensitive lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
SRR5341425 Other lineage4.9 None
ERR1023236 Other lineage6.1.3 None
ERR970413 MDR-TB lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9787030 RR-TB lineage6.1.2 None
ERR502510 HR-TB lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR5341396 Other lineage3;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
ERR970445 MDR-TB lineage2.2.1 None
SRR5341319 Other lineage3 None
SRR5341469 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR3797080 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR9970983 MDR-TB lineage4.3.3 None
SRR8692887 Other None
ERR144568 Sensitive None
SRR8692905 Sensitive None
ERR1063896 HR-TB None
ERR9786597 Other lineage4.6.2.2 None
SRR6045795 Other lineage2.2.1 None
ERR6866807 RR-TB lineage4.9 None
ERR6358979 HR-TB lineage4.9 None
ERR8774092 Sensitive lineage4.1.1.3 None
ERR3797029 Other lineage4.9 None
SRR1173568 Sensitive lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4188035 Other La1.8.1 None
SRR5341373 Other lineage4.9 None
SRR6982178 Sensitive lineage2.2.1 None
ERR4797264 HR-TB lineage4.9 None
SRR1165306 Pre-XDR-TB lineage4.1.1.3 None
ERR736872 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
ERR176651 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR4187921 Sensitive lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR6982472 Sensitive lineage4.4.1.1 None
SRR1181136 Sensitive lineage2.2.1 None
ERR4769421 Other La1.2 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4188372 Sensitive La1.8.1;lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR6982115 Sensitive lineage4.3.2 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR11972387 MDR-TB lineage2.2.1 None
SRR8692858 Other lineage4.9 None
SRR12882669 Sensitive lineage3.1.1 None
ERR3801358 Sensitive lineage6.1.1 None
SRR5341298 Other lineage4.9 None
SRR10808668 Other lineage2.2.1 None
SRR1173213 Pre-XDR-TB lineage4.1.1.3 None
ERR4187995 Sensitive La1.8.1 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1792478 HR-TB La1.7.1 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR6866639 HR-TB lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR11466445 Sensitive lineage4.3.4.1 None
SRR6981918 Sensitive lineage4.4.1.1 None
ERR144557 Sensitive lineage4.8 None
SRR7535082 Other lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
SRR5341400 Sensitive lineage4.9 None
SRR6982168 Sensitive lineage4.4.1.1 None
SRR6832787 Other lineage2.2.1 None
ERR926157 Other lineage4.9 None
ERR4188375 Sensitive lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR3283031 Other La3;lineage4.9 None
ERR4188352 Sensitive La1.8.1 None
ERR926162 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
SRR6982471 Sensitive lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
SRR6982272 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4769393 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
ERR11465353 Sensitive lineage4.3.4.1 None
ERR323066 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR3283032 Other lineage4.9 None
SRR28119823 Sensitive lineage4.9 None
SRR8692800 Sensitive lineage4 None
SRR1180996 Other lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR4797285 MDR-TB lineage1.2.2.2 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR9971243 Pre-XDR-TB lineage4.3.3 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
SRR8692825 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3797081 Sensitive lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3283010 Sensitive La1.8.1 None
SRR3675246 Other lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR5341293 Sensitive lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4188330 Sensitive La1.8.1;lineage4.9 None
SRR1181319 Sensitive lineage2.2.1 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
SRR1173185 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR6045892 Sensitive lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR5162108 Other La1.8.1 None
ERR161037 HR-TB lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4818252 HR-TB lineage4.1.1.2 None
SRR6045010 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR9787079 Other lineage6.1.3 None
SRR1159378 Other lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR1791747 Other La1.8.1 None
ERR926165 Other lineage4.9 None
SRR6982510 Sensitive lineage2.2.1;lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR3797060 Other La1.8.1 None
SRR9971195 MDR-TB lineage4.3.3 None
ERR751317 Sensitive lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR736848 Other lineage4.9 None
ERR1465744 Sensitive lineage4.1.2.1 None
SRR5341300 HR-TB lineage4.9 None
SRR6981912 Sensitive lineage4.3.2.1 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR323115 Sensitive lineage4.9 None
ERR3324345 RR-TB lineage4.1 None
ERR9119669 MDR-TB lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR4188369 Other La1.8.1 None
ERR5908229 Sensitive lineage4.3.3 None