EBG00000313339 - n.2872A>G


Drug resistance types
90 Sensitive 11 RR-TB 84 HR-TB 48 MDR-TB 17 Pre-XDR-TB 2 XDR-TB 88 Other
lineage Counts
lineage Count
lineage4.3.4.2.1 4
lineage4.3.3;lineage4.8 4
lineage4.9 132
La2;lineage4.9 1
La1;lineage2;lineage4.9 1
lineage4.3.3 6
lineage5.2 3
lineage2.2.1;lineage4.9 2
lineage4.3.2.1 5
lineage4.9.1 1
lineage1;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage4 2
La3;lineage4.9 9
La1.7;lineage4.9 8
lineage2.2.1 28
La1.7.1;lineage4.9 1
La1.8.1;lineage4.9 4
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.3.4.2 3
lineage6.1.3 3
lineage6.1.2 1
lineage3 3
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.1.1.3 9
4
lineage3.1;lineage9 1
La1.8.1 13
lineage2.2 1
lineage2.1;lineage4.9;lineage7 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
lineage4.9;lineage7 3
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La2;lineage2.2 1
lineage3.1.2.1 1
lineage4.1.2.1 5
lineage4.4.1.1 3
La1.7;lineage4.9;lineage7 3
lineage4.1 1
lineage2.1;lineage4.9 2
lineage4.1.2 2
lineage4.2.2.1 1
La1.7;M.canetti;lineage4.9 2
La1.7;lineage3.1;lineage4 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage1.2.2.2 2
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.8 2
lineage4.2.2.2 1
lineage1.1.2 3
lineage4.2.1 2
lineage6 1
lineage2.1 1
lineage2.2.1.1 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.9;lineage9 1
lineage4.3.4.1 3
lineage4.8;lineage4.9 2
La3;lineage4 1
M.canetti;lineage4.9;lineage9 1
lineage4.6.2.2 1
lineage4.3.4 1
lineage3.1.1 1
lineage4.1.1.1;lineage4.9 1
lineage4.3.2 2
La3;lineage4.3.4 1
M.canetti;lineage1 1
lineage6.1.1 2
lineage4.6.3;lineage4.9 1
lineage4.8.1 1
La1;lineage4.9 2
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage2.2;lineage4 1
lineage2.2.2 1
La1;lineage4.1.2 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.4.1.2 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage2;lineage4 1
M.canetti;lineage4.2 1
lineage3;lineage4.9 1
lineage1.1.3.1 1
La1.7;lineage4.9;lineage6 1
La1.2 1
lineage4.1.1.2 1
lineage3.1.3 1
La1.7.X-unk4;lineage4.9 1
La1.7.1 1
M.canetti;lineage4.2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 340
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR176518 Sensitive lineage4.3.4.2.1 None
SRR1049676 MDR-TB lineage4.3.3;lineage4.8 None
ERR4188375 Sensitive lineage4.9 None
SRR6982272 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
ERR5908229 Sensitive lineage4.3.3 None
ERR9119483 Pre-XDR-TB lineage5.2 None
SRR6982070 Sensitive lineage2.2.1;lineage4.9 None
SRR2101529 Sensitive lineage4.3.2.1 None
ERR1063883 HR-TB lineage4.9 None
ERR216928 Other lineage4.9.1 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR8692800 Sensitive lineage4 None
ERR323062 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR181744 HR-TB La3;lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
ERR4796254 Other lineage4.9 None
DRR184982 Other lineage2.2.1 None
ERR1063858 HR-TB lineage4.9 None
ERR6362500 Pre-XDR-TB lineage2.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR4187641 Sensitive La1.8.1;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR5341293 Sensitive lineage4.9 None
SRR6981962 Sensitive lineage4.3.2.1 None
ERR3797086 Sensitive lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
ERR4188330 Sensitive La1.8.1;lineage4.9 None
ERR9786346 Sensitive lineage4.3.4.2 None
ERR3283040 HR-TB lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
SRR6044835 Other lineage4.9 None
ERR1023236 Other lineage6.1.3 None
ERR212125 HR-TB lineage4.9 None
ERR9787030 RR-TB lineage6.1.2 None
SRR1196478 Other lineage4.9 None
SRR5341319 Other lineage3 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SAMN02403525 Pre-XDR-TB lineage4.1.1.3 None
SRR9970983 MDR-TB lineage4.3.3 None
ERR1063896 HR-TB None
ERR2706950 MDR-TB lineage5.2 cd
SRR6045795 Other lineage2.2.1 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4188035 Other La1.8.1 None
SRR3675502 Sensitive lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR6982178 Sensitive lineage2.2.1 None
ERR4797264 HR-TB lineage4.9 None
SRR1165306 Pre-XDR-TB lineage4.1.1.3 None
ERR736872 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR4187921 Sensitive lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR11972387 MDR-TB lineage2.2.1 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR8692858 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR1173213 Pre-XDR-TB lineage4.1.1.3 None
ERR4187995 Sensitive La1.8.1 None
ERR702405 HR-TB lineage4.9 None
ERR3797079 Sensitive lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR9786592 Other lineage4.3.4.2 None
ERR4188247 HR-TB lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR7535082 Other lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR4812495 Other lineage4.1.2.1 pe
SRR6982168 Sensitive lineage4.4.1.1 None
ERR387051 RR-TB lineage4.9 None
SRR6982471 Sensitive lineage2.2.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
ERR1465744 Sensitive lineage4.1.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6981912 Sensitive lineage4.3.2.1 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR323115 Sensitive lineage4.9 None
ERR3324345 RR-TB lineage4.1 None
ERR9119669 MDR-TB lineage4.9 None
ERR9787256 Other lineage6.1.3 None
ERR4188369 Other La1.8.1 None
ERR181887 Other lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR9971319 MDR-TB lineage4.1.2 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
SRR16149126 MDR-TB lineage4.2.2.1 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR3797019 Other La1.8.1 None
SRR7236177 Other La1.8.1 None
SRR1062920 MDR-TB lineage4.3.3;lineage4.8 None
ERR926158 Sensitive lineage4.9 None
SRR6982508 Sensitive lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR3283032 Other lineage4.9 None
SRR28119823 Sensitive lineage4.9 None
SRR1180996 Other lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
SRR6511621 HR-TB lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR1035122 HR-TB lineage4.9 None
SRR8692868 Other lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR4797285 MDR-TB lineage1.2.2.2 None
SRR3675585 HR-TB lineage4.9 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046752 Sensitive lineage4.2.2.2 None
SRR9971243 Pre-XDR-TB lineage4.3.3 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR4797193 HR-TB lineage1.1.2 None
SRR8692825 Other lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR9787362 Sensitive lineage6 None
ERR3797081 Sensitive lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR4187666 Other La1.8.1 None
ERR4831618 MDR-TB lineage2.1 None
ERR3283014 Other La3;lineage4.9 None
ERR11465232 Sensitive lineage4.1.2.1 None
SRR12416842 HR-TB lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR3283010 Sensitive La1.8.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR926164 Other lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR6044876 Sensitive lineage4.9 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR6982138 Sensitive lineage4.1.1.3 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR5341455 Sensitive lineage4.9 None
SRR1184329 Other lineage4.9 None
SRR1181319 Sensitive lineage2.2.1 None
SRR1158918 Other lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR5311094 HR-TB lineage4.9 None
SRR5341425 Other lineage4.9 None
SRR11972367 Sensitive lineage2.2.1 None
ERR970413 MDR-TB lineage2.2.1 None
SRR1173185 Other lineage4.9 None
ERR502510 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR4818110 Sensitive lineage4.9 None
ERR926155 Other lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341469 HR-TB lineage4.9 None
ERR161037 HR-TB lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6982418 Sensitive lineage4.1.1.3 None
ERR3797080 Sensitive lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR11775858 Sensitive lineage3 None
ERR9786597 Other lineage4.6.2.2 None
ERR245675 Sensitive lineage1.1.2 None
SRR1173587 Pre-XDR-TB lineage4.1.1.3 None
ERR8774092 Sensitive lineage4.1.1.3 None
ERR3797029 Other lineage4.9 None
ERR983241 MDR-TB lineage2.2.1 None
SRR1140574 MDR-TB lineage4.3.3;lineage4.8 None
ERR176651 Other lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
SRR6045010 Sensitive lineage4.9 None
SRR12882669 Sensitive lineage3.1.1 None
ERR2693252 HR-TB lineage4.9 None
SRR6982257 Sensitive lineage4.1.2.1 None
ERR970441 RR-TB lineage2.2.1.1 None
ERR9787079 Other lineage6.1.3 None
SRR1159378 Other lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR11466445 Sensitive lineage4.3.4.1 None
SRR6981918 Sensitive lineage4.4.1.1 None
SRR5341400 Sensitive lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR6832787 Other lineage2.2.1 None
ERR751317 Sensitive lineage4.9 None
ERR926154 Sensitive lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
ERR4872269 XDR-TB lineage2.2.1 None
ERR4769393 Sensitive lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
ERR4821655 HR-TB lineage4.9 None
SRR5341310 Other lineage1.1.2 None
ERR2660495 Sensitive lineage1.2.2.2 None
ERR970449 RR-TB lineage4.1.1.3 None
SRR6982297 Sensitive lineage4.1.1.1;lineage4.9 None
ERR11465353 Sensitive lineage4.3.4.1 None
ERR323066 HR-TB lineage4.9 None
ERR5987249 MDR-TB lineage4.3.2 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR176778 HR-TB lineage4.9 None
ERR2179737 HR-TB lineage4.2.1 None
ERR3797063 Other La3;lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR1049677 MDR-TB lineage4.3.3;lineage4.8 None
SRR8692782 Other lineage4.9 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR9787146 Sensitive lineage6.1.1 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR1181328 Other lineage2.2.1 None
SRR6982410 Sensitive lineage4.8.1 None
SRR10808805 Other La1;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR6982342 Sensitive lineage4.3.2.1 None
ERR176779 HR-TB lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR8692863 Other lineage2.2;lineage4 None
ERR4188396 Sensitive La1.8.1;lineage4.9 None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR10808399 Sensitive lineage4.9 None
SRR5341453 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR21747022 Pre-XDR-TB lineage2.2.2 None
ERR137226 MDR-TB lineage2.2.1 None
SRR19295647 HR-TB lineage4.9 None
ERR473332 Other lineage4.9 None
SRR9970978 Other La1;lineage4.1.2 None
SRR10808730 Other lineage4.9 None
SRR15315871 Sensitive lineage4.9 None
SRR5341467 Other lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR1023502 MDR-TB lineage2;lineage4 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR5341396 Other lineage3;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR3283021 MDR-TB lineage4.9 None
SRR10315701 MDR-TB lineage4.3.3 None
ERR970445 MDR-TB lineage2.2.1 None
ERR5162108 Other La1.8.1 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR8692887 Other None
ERR144568 Sensitive None
SRR8692905 Sensitive None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR6358979 HR-TB lineage4.9 None
SRR1173568 Sensitive lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR8692894 Other lineage4.9 None
SRR6982472 Sensitive lineage4.4.1.1 None
SRR1181136 Sensitive lineage2.2.1 None
ERR4769421 Other La1.2 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4818252 HR-TB lineage4.1.1.2 None
ERR2513121 Sensitive lineage3.1.3 None
SRR1792378 Other La1.8.1 None
ERR4188372 Sensitive La1.8.1;lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR6982115 Sensitive lineage4.3.2 None
ERR3801358 Sensitive lineage6.1.1 None
SRR5341298 Other lineage4.9 None
SRR10808668 Other lineage2.2.1 None
ERR11465235 Sensitive lineage4.3.4.2.1 None
ERR3797067 Other La1.8.1 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR6982465 Sensitive lineage4.3.4.2 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1791747 Other La1.8.1 None
ERR926165 Other lineage4.9 None
SRR6982510 Sensitive lineage2.2.1;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR144557 Sensitive lineage4.8 None
ERR6866410 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
ERR4872322 Pre-XDR-TB lineage2.2.1 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR3797060 Other La1.8.1 None
SRR9971195 MDR-TB lineage4.3.3 None
ERR4188352 Sensitive La1.8.1 None
ERR926162 Sensitive lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR11465628 Sensitive lineage4.3.4.2.1 None