Run ID: ERR4188369
Sample name:
Date: 01-04-2023 05:02:50
Number of reads: 1128637
Percentage reads mapped: 91.07
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491386 | p.Leu202Ile | missense_variant | 0.19 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472669 | n.824_825insTGG | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472679 | n.834T>C | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472681 | n.838_843delTGGGAT | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472708 | n.863T>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472733 | n.888G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472742 | n.897C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472969 | n.1125_1126delCG | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472974 | n.1129A>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472975 | n.1130T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472977 | n.1132G>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473001 | n.1156G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473002 | n.1157G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473008 | n.1163C>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473009 | n.1164T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473020 | n.1175T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474012 | n.355C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476608 | n.2951C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476614 | n.2957A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476619 | n.2962C>T | non_coding_transcript_exon_variant | 0.22 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102193 | p.Arg284Trp | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 0.95 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
thyA | 3073755 | c.717C>T | synonymous_variant | 1.0 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242680 | p.Ala940Ser | missense_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.98 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 0.97 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4327530 | c.-57G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |