Rv1630 - c.219C>T
Drug resistance types
105 Sensitive
1 RR-TB
39 HR-TB
12 MDR-TB
13 Pre-XDR-TB
0 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 36 |
| 45 | |
| lineage4.9;lineage3;lineage2.1 | 1 |
| lineage4.2;lineage2.1;lineage1.1.2 | 1 |
| lineage2.2.1 | 12 |
| lineage5.1 | 1 |
| lineage2.1 | 5 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage4.5;lineage2.1 | 3 |
| lineage4 | 69 |
| lineage6.2;lineage4.9;lineage4.3.2;lineage4.3.1;lineage2.1 | 1 |
| lineage3 | 5 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.2.1 | 8 |
| lineage4.8 | 2 |
| lineage6.2;lineage4.9;lineage4.8.2;lineage4.5;lineage4.3.1;lineage2.1 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.9;lineage2.1 | 4 |
| lineage4.3.4.2.1;lineage1.2.2.2 | 1 |
| lineage6.1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.1.2 | 1 |
| lineage4.8;lineage4.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage5.2 | 1 |
| lineage2.2 | 5 |
| lineage2.2.1.1 | 2 |
| lineage4.8.1 | 1 |
| lineage4.4.2;lineage2.2.1 | 1 |
| La2 | 1 |
| La1.3 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3 | 1 |
| M.bovis | 1 |
| lineage1.1.2 | 1 |
| lineage6.2;lineage4.8.2 | 1 |
| lineage4.9;lineage1.1.2 | 1 |
| lineage4.8.2;lineage4.3.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage5.1.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 238 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341453 | Sensitive | None | ERR6358951 | Sensitive | lineage4.9;lineage3;lineage2.1 | None | SRR5341296 | Sensitive | lineage4.2;lineage2.1;lineage1.1.2 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359069 | Sensitive | lineage5.1 | None | SRR5341437 | Sensitive | lineage2.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR5341455 | Sensitive | lineage4.9;lineage4.5;lineage2.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | ERR4819462 | Other | lineage4 | None | SRR5341467 | Other | lineage6.2;lineage4.9;lineage4.3.2;lineage4.3.1;lineage2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR2515970 | Sensitive | lineage4.3.4.2.1 | za | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341299 | Sensitive | lineage2.1 | None | ERR2446382 | Other | lineage4 | None | SRR5341396 | Other | None | SRR5341366 | Sensitive | lineage6.2;lineage4.9;lineage4.8.2;lineage4.5;lineage4.3.1;lineage2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2693231 | Other | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR5341469 | Other | lineage4.9;lineage4.5;lineage2.1 | None | ERR2517475 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2660417 | Sensitive | lineage4.3.4.2.1;lineage1.2.2.2 | None | ERR2660516 | Sensitive | lineage4.3.4.2.1 | None | ERR2693230 | Other | None | ERR2660416 | Sensitive | lineage4.3.4.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR1158918 | Sensitive | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR12006550 | Other | lineage1.2.1.2 | None | ERR6359066 | HR-TB | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6982365 | Other | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | SRR1172310 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR1167384 | Other | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR502472 | Other | lineage4.6.2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR4831638 | Sensitive | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR10808805 | Sensitive | None | ERR294266 | HR-TB | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR502943 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | ERR4831841 | HR-TB | lineage4.4.2;lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | SRR1183049 | Other | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | ERR323085 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR137286 | Sensitive | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283024 | Other | None | ERR3283031 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283032 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3335747 | Pre-XDR-TB | lineage4 | pk | ERR3335734 | Pre-XDR-TB | lineage4 | pk | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR3797014 | Other | None | ERR369163 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR3797024 | Other | lineage4.9 | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR3797061 | Other | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR400345 | Other | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769436 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4797313 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4812155 | Sensitive | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811030 | Sensitive | None | ERR4809127 | Sensitive | lineage4.3.4.2.1 | za | ERR4809167 | Sensitive | lineage4.3.4.2.1 | za | ERR4811031 | Sensitive | lineage4.5 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR6359074 | HR-TB | lineage2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR3275450 | Other | lineage4 | None | SRR5341298 | Sensitive | lineage4.9;lineage2.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176751 | HR-TB | None | ERR176643 | HR-TB | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR4814976 | Other | lineage4.9 | None | ERR176740 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2 | None | ERR6359045 | Other | None | ERR212001 | HR-TB | None | SRR5341300 | Other | lineage4.9;lineage2.1 | None | ERR212033 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR5341470 | HR-TB | M.bovis | None | ERR216965 | HR-TB | lineage4.9 | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4816852 | Other | lineage4.9 | None | SRR5341308 | Sensitive | lineage4.9;lineage4.5;lineage2.1 | None | ERR4816466 | HR-TB | None | SRR5341303 | Sensitive | lineage6.2;lineage4.8.2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR5341461 | Sensitive | lineage4.9;lineage1.1.2 | None | ERR4817998 | Other | lineage3 | None | SRR5341387 | Other | lineage4.8.2;lineage4.3.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR751326 | Sensitive | lineage4.9;lineage2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None |
|---|
