EBG00000313339 - n.2096C>T
Drug resistance types
75 Sensitive
36 RR-TB
27 HR-TB
37 MDR-TB
28 Pre-XDR-TB
0 XDR-TB
168 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 35 |
| lineage2.1 | 2 |
| lineage5.2 | 2 |
| lineage2.2.1.1 | 5 |
| lineage4.1 | 3 |
| lineage4.4.1.1 | 7 |
| lineage4 | 48 |
| lineage3 | 32 |
| lineage4.3 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2 | 4 |
| lineage4.1.2.1 | 17 |
| lineage4.6.1.1 | 1 |
| La1.8.1 | 4 |
| lineage4.8 | 27 |
| lineage4.3.2.1 | 2 |
| lineage4.2.1 | 10 |
| lineage4.7 | 2 |
| lineage4.3.3 | 6 |
| lineage4.2.1;lineage2.2.1 | 1 |
| lineage2.2.2 | 1 |
| 31 | |
| La1.2 | 2 |
| lineage4.9 | 56 |
| La1.7.X-unk4 | 1 |
| La1.3 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage1.1.2 | 8 |
| lineage2.2.1.2 | 1 |
| lineage4.3.2 | 3 |
| lineage1.1.1.1 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.3.1 | 3 |
| lineage3.1.3 | 2 |
| lineage6.1.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6 | 1 |
| lineage4.4 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.2.1.1 | 3 |
| lineage4.4.2 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage4.1.1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage3.1.2 | 3 |
| lineage3.1.1 | 4 |
| lineage4.1.1.3 | 5 |
| lineage4.5 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.1.3.1 | 3 |
| lineage1.1.1 | 1 |
| lineage4.1.1.3.1;lineage3.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| La3 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.8.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 371 |
Geographic prevalence
Country level data for this variant is available for 31 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831739 | MDR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9971382 | Sensitive | lineage4.4.1.1 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR3275190 | Other | lineage3 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | SRR9613540 | Sensitive | lineage4.6.2.2 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131091 | Sensitive | lineage4.1.2 | None | SRR7131152 | MDR-TB | lineage2.2.1 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR8600046 | Other | La1.8.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR7646014 | MDR-TB | lineage4.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR8651616 | MDR-TB | lineage2.2.1 | None | SRR9971088 | RR-TB | lineage2.2.1 | None | SRR7755652 | Pre-XDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | SRR7755657 | Other | lineage4.8 | None | ERR323066 | Sensitive | lineage4 | None | DRR034348 | Other | lineage2.2.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR184932 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR1035122 | Sensitive | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR323107 | Other | lineage4 | None | SRR7851312 | Other | La1.2 | None | ERR323085 | Sensitive | lineage4 | None | ERR10796586 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR137286 | Sensitive | lineage4 | None | ERR1213932 | Sensitive | lineage4.1.2.1 | None | ERR3283014 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283028 | Other | None | ERR3283041 | Other | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439265 | Other | lineage4.9 | None | ERR3439277 | Sensitive | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4769419 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769495 | Other | La1.3 | None | ERR4769418 | Other | La1.2 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4798099 | Other | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4797780 | Pre-XDR-TB | lineage4.8 | in | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4811704 | Sensitive | lineage4.3.2 | None | ERR5865106 | MDR-TB | lineage4.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5866556 | MDR-TB | lineage2.2.1 | None | ERR6866022 | Other | None | ERR6358979 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR9117763 | HR-TB | lineage3 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR10272569 | Sensitive | lineage4.4.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9787362 | Sensitive | lineage6 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | SRR10808805 | Sensitive | None | SRR1173719 | HR-TB | lineage3 | None | SRR1172065 | Pre-XDR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173348 | RR-TB | lineage4.3.2 | None | SRR1173568 | Other | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR14334195 | Pre-XDR-TB | lineage2.2.1 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173777 | Other | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR12006547 | Sensitive | lineage1.2.1.2.1 | None | SRR14801749 | Sensitive | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156775 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18572456 | Sensitive | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR19303840 | Sensitive | lineage1.2.1.1 | None | SRR8692783 | Other | lineage4.9 | None | SRR18572455 | Sensitive | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR8692810 | Other | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692800 | Other | lineage4 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692828 | Other | lineage4.9 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692775 | Other | lineage4.9 | None | SRR8692899 | Other | lineage4.9 | None | SRR8692823 | Other | lineage4.9 | None | SRR8692871 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692838 | Other | lineage4.9 | None | SRR8692867 | Other | lineage4.9 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR3675474 | Other | lineage4.1.1 | None | ERR4815143 | HR-TB | lineage4.2.2.2 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4815310 | Other | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | ERR4815502 | Other | lineage4.1 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675245 | Other | lineage4.1.2.1 | None | SRR3675273 | Sensitive | lineage3 | None | ERR4814878 | Sensitive | lineage4.8 | None | ERR4815550 | Other | lineage4 | None | ERR4815528 | Other | lineage4.8 | None | ERR4814951 | Pre-XDR-TB | lineage3.1.2 | gb | ERR4814905 | Other | lineage4.8 | gb | ERR4814911 | Other | lineage4.3.3 | None | SRR3675289 | MDR-TB | lineage2.2.1 | gb | ERR4814976 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4815079 | RR-TB | lineage3 | None | ERR2229557 | HR-TB | lineage4.8 | None | ERR4817464 | Other | lineage3.1.1 | None | ERR2228965 | Other | lineage4.8 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4816110 | Sensitive | lineage4.9 | gb | ERR4816322 | Other | lineage4.9 | None | ERR4816232 | Other | lineage4 | None | ERR2229147 | Other | lineage4.8 | None | ERR4816397 | Other | lineage1.1.2 | None | ERR4817069 | RR-TB | None | ERR2446509 | Other | lineage3 | nl | ERR4817109 | Other | lineage3 | None | ERR4816571 | Other | lineage1.1.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816569 | Other | lineage4.3.3 | gb | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816756 | RR-TB | None | ERR2229436 | Other | lineage4.8 | None | ERR2229435 | HR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4817434 | Other | lineage3 | None | ERR4816833 | Other | lineage4.1.1.3 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816883 | Other | lineage4.5 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR2228910 | Other | lineage4.8 | None | ERR2245421 | MDR-TB | lineage3.1.1 | no | SAMEA3450033 | Other | lineage4.8 | None | ERR4817948 | Other | lineage3 | gb | ERR4819002 | HR-TB | lineage4.8 | None | ERR4818726 | Other | lineage4.1.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4819012 | Other | lineage1.1.2 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818853 | Other | lineage4.1.2 | gb | ERR4818052 | Sensitive | lineage1.2.1.1 | gb | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818261 | Other | lineage1.1.2 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR4818283 | Sensitive | lineage4.5 | gb | ERR4818484 | Sensitive | lineage3 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818952 | Other | lineage3 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR5341453 | Sensitive | None | ERR4817569 | Other | lineage4.3.4.1 | None | SRR5341387 | Other | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4819206 | Other | lineage4.8 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2510419 | Pre-XDR-TB | lineage4.2.2.2 | pk | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR5341396 | Other | lineage4 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | SRR5341425 | Other | lineage4 | None | ERR4820290 | Other | lineage3 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR4820736 | Other | lineage4.1.2.1 | gb | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR4820397 | Other | lineage4.9 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR4819533 | Other | lineage1.1.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514351 | Sensitive | lineage3 | gb | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4820503 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819910 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | ERR4820130 | Other | lineage3 | None | ERR4820161 | Other | lineage3 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR5341308 | Sensitive | lineage4 | None | ERR4820107 | RR-TB | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | ERR4821136 | Other | lineage4.2.1 | gb | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR5341469 | Other | lineage4 | None | ERR4821802 | Other | La3 | gb | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4821288 | Other | lineage4.7 | None | ERR4821222 | Other | lineage4.3.2.1 | None | ERR4821962 | Other | lineage4.1.1.3 | gb | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4822105 | Other | lineage4.1 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4821616 | Other | lineage1.1.3.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR4821725 | Other | lineage4.8.2 | gb | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR6045892 | Sensitive | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045124 | Other | lineage4.9 | None | SRR6044817 | Other | lineage3 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045263 | Sensitive | lineage4.9 | None | SRR6045110 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6045248 | Other | lineage3.1.1 | None | SRR6046066 | HR-TB | None | SRR6045321 | Other | lineage1.1.3.1 | None | ERR4828879 | MDR-TB | lineage3 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046246 | Other | lineage3 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046398 | Other | lineage4.1.1.3.1 | gb | SRR6046273 | Other | lineage3.1.2 | None | SRR6046291 | Other | lineage3 | None | SRR6046508 | Sensitive | lineage3.1.2.2 | gb | SRR6046540 | HR-TB | None | SRR6046737 | Other | lineage4.9 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6046815 | Other | lineage3 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6511621 | HR-TB | None | SRR6397815 | Other | lineage4.4.1.1 | None |
|---|
