EBG00000313339 - n.2096C>T
Drug resistance types
21 Sensitive
36 RR-TB
46 HR-TB
24 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
127 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 76 |
| lineage4.8 | 48 |
| 3 | |
| lineage2.2.1 | 26 |
| lineage4.6.2.2 | 2 |
| lineage4.4.1.1 | 3 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3 | 5 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1.2.1 | 11 |
| lineage4.2.1 | 9 |
| lineage4.1.2 | 2 |
| La1.8.1 | 4 |
| lineage2.2.1.1 | 5 |
| La3;lineage4.9 | 8 |
| lineage4.1.1.1 | 1 |
| lineage4.3 | 1 |
| lineage3;lineage4 | 1 |
| lineage6.1.3 | 1 |
| lineage5.2 | 2 |
| lineage3 | 8 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.2.1.1 | 3 |
| La1.3 | 1 |
| lineage1.1.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 2 |
| lineage1.1.3.1 | 2 |
| lineage4.3.3 | 3 |
| lineage2.2.1.2 | 1 |
| lineage4 | 2 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.4.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| lineage1.2.2.2 | 2 |
| lineage6 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.1.1 | 1 |
| La1.2 | 2 |
| lineage1.1.1 | 1 |
| La1.7.X-unk4 | 1 |
| La3;lineage4 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage1.1.3.2 | 1 |
| lineage2.2.2 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 270 |
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1735598 | RR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4817069 | RR-TB | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR137286 | Other | lineage4.9 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR978733 | RR-TB | lineage4.8 | None | ERR4797264 | HR-TB | lineage4.9 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR7069473 | Other | lineage4.1.1.2 | None | SRR8692894 | Other | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR978694 | Other | lineage4.8 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR7069931 | Other | lineage4.2.2.2 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR978756 | Other | lineage4.8 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | ERR978747 | Other | lineage4.8 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR7617847 | Other | La1.8.1 | None | DRR184629 | Other | lineage2.2.1 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR978726 | RR-TB | lineage4.8 | None | ERR4769433 | RR-TB | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7131152 | MDR-TB | lineage2.2.1 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR3675230 | Other | lineage3;lineage4 | None | SRR7645927 | Other | lineage4.8 | None | SRR10315579 | Other | lineage2.2.1.1 | None | ERR978735 | Other | lineage4.8 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR978762 | Other | lineage4.8 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR4819002 | HR-TB | lineage4.8 | None | ERR978748 | Other | lineage4.8 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR4821769 | Other | lineage4.1.2.1 | None | SRR7645928 | Other | lineage4.7 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR1180996 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SAMEA3450033 | Other | lineage4.8 | None | ERR4818052 | Sensitive | lineage1.2.1.1 | gb | SRR7645899 | Other | lineage2.2.1 | None | SRR8692893 | Other | lineage4.9 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | SRR5341323 | Sensitive | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR5865106 | MDR-TB | lineage4.2.1 | None | ERR4769495 | Other | La1.3 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR323107 | HR-TB | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR978752 | Other | lineage4.8 | None | SRR16156775 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR978734 | RR-TB | lineage4.8 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | SRR5341467 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | SRR1173310 | Other | lineage3.1.1 | None | ERR502510 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | SRR7646014 | MDR-TB | lineage4.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR736856 | HR-TB | lineage4.9 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR1063896 | HR-TB | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR7069922 | Other | lineage2.2.1 | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | ERR4815783 | Other | lineage4.1.2.1 | gb | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692858 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR2229436 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | ERR4816322 | Other | lineage4.9 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | ERR3283044 | Other | lineage4 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR2503533 | Other | lineage4.1.2.1 | fi | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | ERR10796563 | Other | lineage4.3.3 | None | SRR7236177 | Other | La1.8.1 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR911930 | Other | lineage4.8 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR5818672 | Other | lineage1.2.2.2 | None | ERR9787362 | Sensitive | lineage6 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR4818272 | Other | lineage4.3.2 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR2228900 | Other | lineage4.8 | None | ERR4769418 | Other | La1.2 | None | SRR7236330 | Other | La1.8.1 | None | ERR4817554 | Other | lineage1.1.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR6045158 | Other | lineage4.9 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | ERR4797184 | HR-TB | lineage4.9 | None | ERR4814905 | Sensitive | lineage4.8 | gb | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR2514351 | Sensitive | lineage3 | gb | SRR7851312 | Other | La1.2 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR8692898 | Other | lineage4.9 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR978761 | Other | lineage4.8 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR8692887 | Other | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR4816852 | Other | lineage4.9 | None | SRR6397733 | Other | lineage4.4.1.2 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | SRR6044952 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR779852 | HR-TB | lineage4.9 | None | SRR7755657 | Other | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4816702 | Other | lineage4.6.2.2 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | ERR4822138 | Other | lineage4.1.2.1 | None | ERR9786592 | Other | lineage4.3.4.2 | None | SRR7755655 | Other | lineage4.1.2.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7069784 | Other | lineage1.2.2.2 | None | SRR7535082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303840 | Sensitive | lineage1.2.1.1 | None | ERR867575 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR4817434 | Other | lineage3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446509 | Other | lineage3 | nl | SRR5341384 | HR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | ERR4816868 | Other | lineage4.4.1.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR18213736 | Other | lineage3 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR6046250 | Other | lineage4.9 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR7070293 | Other | lineage4.8 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR8692782 | Other | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | ERR978693 | Other | lineage4.8 | None | ERR3273109 | HR-TB | lineage4 | None | ERR3275190 | Other | lineage3 | nl | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4814976 | Other | lineage4.9 | None | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR5153833 | Other | lineage2.2.1 | None | ERR4796254 | Other | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR2228910 | Other | lineage4.8 | None | SRR5341453 | Other | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1173719 | Other | lineage4.9 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | DRR185024 | Other | lineage2.2.2 | None | SRR6044904 | Other | lineage3 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR911929 | Other | lineage4.8 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None |
|---|
