EBG00000313339 - n.2096C>T


Drug resistance types
72 Sensitive 36 RR-TB 27 HR-TB 35 MDR-TB 25 Pre-XDR-TB 0 XDR-TB 157 Other
lineage Counts
lineage Count
lineage4 48
lineage4.1.1.3.1;lineage3.1.2 1
lineage1.1.2 8
lineage4.9 55
lineage3 31
lineage2.2.1 34
lineage4.8 26
31
lineage4.1.2.1 15
lineage4.7 2
lineage4.9;lineage2.1 1
lineage4.3.2.1 2
lineage4.1 3
lineage3.1.1 3
lineage1.1.3.1 3
lineage1.2.2.2 1
lineage3.1.2 2
lineage4.4.1.2 1
lineage4.4.1.1 7
lineage2.1 2
lineage5.2 2
lineage2.2.1.1 5
lineage4.3.4.1 2
lineage4.6.2.2 3
lineage4.1.2 3
lineage1.2.1.1 3
lineage4.6.1.1 1
La1.8.1 4
lineage4.2.1 9
lineage4.3.3 5
lineage4.2.1;lineage2.2.1 1
lineage2.2.2 1
La1.2 2
lineage4.1.1.3 4
La1.7.X-unk4 1
lineage4.9;La1.3 1
lineage1.1.3.2 1
La1.3 1
lineage2.2.1.2 1
lineage4.3.2 3
lineage1.1.1.1 1
lineage4.6.5 2
lineage4.3 2
lineage4.3.4.2 1
lineage3.1.3 2
lineage6.1.3 1
lineage6 1
lineage1.2.1.2.1 1
lineage4.4 1
lineage4.4.2 1
lineage4;lineage2.2 1
lineage4.1.1 1
lineage4.2.2.2 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage4.5 1
lineage4.1.1.2 1
lineage4.3.4.2.1 1
lineage4.1.1.3.1 2
lineage1.1.1 1
spoligotype Counts
spoligotype Count
None 352
Geographic prevalence
Country level data for this variant is available for 12 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341300 Other lineage4 None
ERR2514430 Other lineage4.1.1.3.1;lineage3.1.2 None
ERR4819533 Other lineage1.1.2 None
ERR4820397 Other lineage4.9 None
SRR5341267 Pre-XDR-TB lineage3 None
SRR5341455 Sensitive lineage4 None
SRR5341298 Sensitive lineage4 None
ERR4820503 Other lineage2.2.1 None
SRR5341299 Sensitive lineage4 None
ERR4819910 Other lineage4.9 None
SRR5341303 RR-TB lineage4 None
SRR5341308 Sensitive lineage4 None
SAMEA3501070 RR-TB lineage4.8 None
SRR5341323 Sensitive lineage4 None
SRR5341310 Other lineage1.1.2 None
ERR4820161 Other lineage3 None
ERR4820107 RR-TB None
ERR4820130 Other lineage3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341461 Sensitive lineage4 None
SRR6045424 Other lineage1.1.2 None
ERR4821769 Other lineage4.1.2.1 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
SRR5341467 Other lineage4 None
SAMEA3501052 RR-TB lineage4.8 None
SRR5341469 Other lineage4 None
ERR2446509 Other lineage3 nl
ERR4821288 Other lineage4.7 None
ERR502511 Sensitive lineage4.9;lineage2.1 None
SAMEA3501046 RR-TB lineage4.8 None
ERR4821222 Other lineage4.3.2.1 None
ERR4822138 Other lineage4.1.2.1 None
ERR4822105 Other lineage4.1 None
SRR6045159 Other lineage3.1.1 None
SRR6045892 Sensitive None
SRR6044855 Other lineage4.9 None
SRR6045110 Other lineage3 None
ERR4821616 Other lineage1.1.3.1 None
ERR4821655 Sensitive lineage4 None
SRR5818672 Other lineage1.2.2.2 None
SRR6044817 Other lineage3 None
SRR6044904 Other lineage3 None
SRR6044952 RR-TB lineage4.9 None
SRR6045124 Other lineage4.9 None
SRR6045158 Other lineage4.9 None
SRR6045263 Sensitive lineage4.9 None
SRR6045248 Other lineage3.1.1 None
SRR6046246 Other lineage3 None
SRR6045321 Other lineage1.1.3.1 None
SRR6046250 Other lineage4.9 None
SRR6046066 HR-TB None
SRR6046273 Other lineage3.1.2 None
SRR6046291 Other lineage3 None
SRR6046385 Other lineage4.9 None
SRR6046540 HR-TB None
ERR4828879 MDR-TB lineage3 None
SRR6046655 Other lineage4.1.2.1 None
SRR6046815 Other lineage3 None
SRR6046737 Other lineage4.9 None
SRR6046852 MDR-TB lineage3 None
SRR6511621 HR-TB None
SRR6397733 Other lineage4.4.1.2 None
ERR4814905 Sensitive lineage4.8 gb
SRR6397815 Other lineage4.4.1.1 None
ERR4831618 MDR-TB lineage2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4872077 Pre-XDR-TB lineage5.2 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831657 MDR-TB lineage2.2.1 None
ERR2503533 Other lineage4.1.2.1 fi
ERR4831739 MDR-TB lineage2.2.1 None
SRR6981961 Sensitive lineage2.2.1 None
SRR6789624 MDR-TB lineage4.1 None
ERR4815783 Other lineage4.1.2.1 gb
ERR2984792 Pre-XDR-TB lineage4.3.4.1 None
ERR502510 Sensitive lineage4 None
SRR9613540 Sensitive lineage4.6.2.2 None
SRR7131091 Sensitive lineage4.1.2 None
SRR7131152 MDR-TB lineage2.2.1 None
ERR4818052 Sensitive lineage1.2.1.1 gb
SRR7535047 RR-TB lineage4.6.1.1 None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR9971382 Sensitive lineage4.4.1.1 None
SRR9970980 Other lineage4.1.2 None
SRR7535082 Sensitive lineage4 None
SRR7645899 RR-TB lineage2.2.1 None
SRR8600046 Other La1.8.1 None
SRR9970979 Sensitive lineage4.8 None
SRR9970978 Sensitive lineage4.1.2 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7645901 MDR-TB lineage2.2.1 None
SRR7645928 RR-TB lineage4.7 None
SRR7645906 Other lineage2.2.1 None
SRR7645924 Pre-XDR-TB lineage4.2.1 None
SRR7645927 Other lineage4.8 None
SRR7645971 Other lineage2.2.1 None
SRR8600288 Other La1.8.1 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR7645972 MDR-TB lineage4.2.1 None
SRR7755642 MDR-TB lineage4.2.1 None
SRR7645977 MDR-TB lineage4.2.1 None
SRR9971088 RR-TB lineage2.2.1 None
SRR7646014 MDR-TB lineage4.2.1 None
SRR7646018 MDR-TB lineage4.2.1 None
SRR8651616 MDR-TB lineage2.2.1 None
SRR7755652 Pre-XDR-TB lineage4.2.1;lineage2.2.1 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR7755655 Other lineage4.1.2.1 None
SRR7755649 MDR-TB lineage4.2.1 None
SRR7755657 Other lineage4.8 None
ERR323107 Other lineage4 None
SRR7755688 Pre-XDR-TB lineage4.2.1 None
ERR1063896 Sensitive None
ERR323066 Sensitive lineage4 None
DRR184932 Other lineage2.2.1 None
DRR185024 Other lineage2.2.2 None
ERR323085 Sensitive lineage4 None
ERR1035122 Sensitive None
ERR1063883 Sensitive lineage4 None
SRR7851312 Other La1.2 None
DRR034348 Other lineage2.2.1 None
DRR184629 Other lineage2.2.1 None
ERR4819175 Other lineage4.1.1.3 gb
ERR10796563 Other lineage4.3.3 None
ERR10796575 RR-TB lineage4.9 None
ERR10796586 Other lineage4.9 None
ERR3273109 MDR-TB lineage4 None
ERR137286 Sensitive lineage4 None
ERR1213932 Sensitive lineage4.1.2.1 None
ERR323115 Sensitive lineage4 None
ERR3283014 HR-TB None
ERR3283013 MDR-TB lineage4 None
ERR3797048 HR-TB None
ERR3283028 Other None
ERR3439265 Other lineage4.9 None
ERR3439277 Sensitive lineage4.9 None
ERR3283031 HR-TB None
ERR3283041 Other lineage4.9 None
ERR3283047 HR-TB None
ERR3283057 HR-TB lineage4 None
ERR3445487 Other La1.7.X-unk4 None
ERR3797063 HR-TB None
ERR3797067 Other La1.8.1 None
ERR3806850 HR-TB lineage4.1.2.1 None
ERR3797079 Sensitive lineage4 None
ERR3797087 Sensitive lineage4 None
ERR3797064 Sensitive None
ERR4024582 MDR-TB lineage4.1.2.1 None
ERR4769417 Pre-XDR-TB lineage4.9 None
ERR4024991 Other None
ERR4457829 MDR-TB lineage4.1.2.1 None
ERR4769419 Other lineage4.9 None
ERR4769418 Other La1.2 None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4769433 Pre-XDR-TB lineage4.9 None
ERR4796929 Sensitive lineage4 None
ERR4769508 RR-TB lineage4.9 None
ERR2514801 Other lineage1.1.3.2 gb
ERR4769495 Other La1.3 None
ERR4769530 RR-TB lineage4.9 None
ERR4796254 Sensitive lineage4 None
ERR4797184 Sensitive lineage4 None
ERR2514351 Sensitive lineage3 gb
ERR2514215 Other lineage2.2.1 gb
ERR4797193 HR-TB lineage1.1.2 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR4797264 Sensitive None
ERR4799378 Sensitive lineage4 None
ERR4797474 Other None
ERR4798099 Other None
ERR5917972 MDR-TB lineage4.4.1.1 za
ERR5866556 MDR-TB lineage2.2.1 None
ERR4811704 Sensitive lineage4.3.2 None
ERR5865106 MDR-TB lineage4.2.1 None
ERR5979454 Pre-XDR-TB lineage3 None
ERR6866022 Other None
ERR6358979 Other None
ERR736834 Sensitive lineage4 None
ERR6866410 Sensitive None
ERR6866547 Sensitive lineage4 None
ERR6866639 Other None
ERR736856 HR-TB lineage4 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR736872 Sensitive lineage4 None
ERR751326 Sensitive lineage4 None
ERR7801176 RR-TB lineage4.6.5 None
ERR7801175 RR-TB lineage4.6.5 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9117763 HR-TB lineage3 None
ERR9117760 HR-TB lineage4.3 None
ERR9786592 Sensitive lineage4.3.4.2 None
ERR9117826 Other lineage3.1.3 None
ERR9119483 Pre-XDR-TB lineage5.2 None
ERR9787256 Other lineage6.1.3 None
ERR9786911 HR-TB lineage4.1.2.1 None
SRR10315579 Other lineage2.2.1.1 None
ERR983238 MDR-TB lineage2.2.1.1 None
ERR9787362 Sensitive lineage6 None
SRR10272569 Sensitive lineage4.4.1.1 None
SRR10315464 MDR-TB lineage4.4.1.1 None
SRR10808490 Sensitive lineage2.2.1.1 None
SRR10808399 Sensitive lineage4 None
SRR11444077 Sensitive lineage4.6.2.2 None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10808805 Sensitive None
SRR10809074 Sensitive lineage4 None
SRR1173310 MDR-TB None
SRR1172065 Pre-XDR-TB lineage3 None
SRR1158918 Sensitive lineage4 None
SRR1173348 RR-TB lineage4.3.2 None
SRR1173719 HR-TB lineage3 None
SRR1173568 Other lineage4.9 None
SRR1173777 Other lineage4 None
SRR12006547 Sensitive lineage1.2.1.2.1 None
SRR1180996 HR-TB lineage4 None
SRR1183965 Sensitive lineage4.9 None
SRR14801749 Sensitive None
SRR14334195 Pre-XDR-TB lineage2.2.1 None
SRR14334194 Pre-XDR-TB lineage2.2.1 None
SRR16627752 RR-TB lineage4.4 None
SRR16156775 Other lineage4.9 None
SRR16156697 MDR-TB lineage2.2.1 None
SRR18572456 Sensitive lineage4.9 None
SRR18002896 Pre-XDR-TB lineage2.2.1 None
SRR18002987 Other lineage2.2.1 None
SRR18572455 Sensitive lineage4.9 None
SRR1791747 Other La1.8.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002908 Other lineage2.2.1 None
SRR18003033 Other lineage2.2.1 None
SRR18213726 Other lineage3 None
SRR18213736 MDR-TB lineage3 None
SRR20969542 Other lineage4.4.2 None
SRR18909918 Other lineage2.2.1.1 None
SRR19303840 Sensitive lineage1.2.1.1 None
SRR5709926 MDR-TB lineage2.2.1 None
SRR8692790 RR-TB lineage4 None
SRR8692783 Other lineage4.9 None
SRR8692807 Other lineage4.9 None
SRR8692812 Other lineage4.9 None
SRR8692810 Other lineage4.9 None
SRR8692879 HR-TB lineage4.9 None
SRR8692822 Other lineage4.9 None
SRR8692858 Sensitive lineage4.9 None
SRR8692893 Other lineage4.9 None
SRR8692885 Other lineage4.9 None
SRR8692881 Other lineage4.9 None
SRR8692825 Other lineage4.9 None
SRR8692897 Other lineage4.9 None
SRR8692782 Other lineage4.9 None
SRR8692800 Other lineage4 None
SRR8692824 Other lineage4.9 None
SRR8692898 Other lineage4.9 None
SRR8692905 HR-TB None
SRR8692775 Other lineage4.9 None
SRR8692878 Other lineage4.9 None
SRR8692894 Other lineage4.9 None
SRR8692828 Other lineage4.9 None
SRR8692863 Other lineage4;lineage2.2 None
SRR8692882 HR-TB lineage4.9 None
SRR8692823 Other lineage4.9 None
SRR8692791 Other lineage4.9 None
SRR8692867 Other lineage4.9 None
SRR8692838 Other lineage4.9 None
SRR3675474 Other lineage4.1.1 None
SRR8692899 Other lineage4.9 None
SAMEA3501065 RR-TB lineage4.8 None
SRR8692871 Other lineage4.9 None
SRR8692887 Other None
ERR4815143 HR-TB lineage4.2.2.2 None
ERR4814356 Pre-XDR-TB lineage3.1.2 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
ERR4815310 Other None
SRR3675230 RR-TB lineage3 None
SRR3675246 Sensitive lineage4 None
ERR702405 Sensitive lineage2.1 None
ERR4815528 Other lineage4.8 None
SRR3675273 Sensitive lineage3 None
ERR4814878 Sensitive lineage4.8 None
ERR4815502 Other lineage4.1 None
SRR3675245 Other lineage4.1.2.1 None
ERR4814911 Other lineage4.3.3 None
ERR4814976 Other lineage4.9 None
ERR4815550 Other lineage4 None
ERR4815556 RR-TB lineage3 None
ERR2228965 Other lineage4.8 None
ERR4815079 RR-TB lineage3 None
SAMEA3501015 Other lineage4.8 None
ERR4816184 Other lineage4.1.2.1 None
ERR4817464 Other lineage3.1.1 None
ERR2229557 HR-TB lineage4.8 None
ERR2027209 MDR-TB lineage1.2.1.1 None
ERR4816232 Other lineage4 None
ERR4816322 Other lineage4.9 None
ERR2229435 HR-TB lineage4.8 None
SRR5341384 Sensitive lineage4.9 None
ERR4816571 Other lineage1.1.2 None
ERR4816702 RR-TB lineage4.6.2.2 None
ERR4816756 RR-TB None
ERR2229147 Other lineage4.8 None
ERR4817069 RR-TB None
ERR4816397 Other lineage1.1.2 None
ERR4817109 Other lineage3 None
ERR4816852 Other lineage4.9 None
ERR2229436 Other lineage4.8 None
ERR4817434 Other lineage3 None
ERR4816833 Other lineage4.1.1.3 None
ERR2228890 Other lineage4 None
ERR2228815 RR-TB lineage4.8 None
ERR4816868 Other lineage4.4.1.1 None
ERR4816883 Other lineage4.5 None
ERR2228838 RR-TB lineage4.8 None
SAMEA3501063 RR-TB lineage4.8 None
ERR2228910 Other lineage4.8 None
SAMEA3450033 Other lineage4.8 None
ERR2513121 Sensitive lineage3.1.3 None
ERR3275190 Other lineage3 nl
ERR4818252 Other lineage4.1.1.2 None
ERR2228899 RR-TB lineage4.8 None
ERR2228900 RR-TB lineage4.8 None
ERR2513382 RR-TB lineage4.1.1.3 None
ERR4819002 HR-TB lineage4.8 None
ERR4818726 Other lineage4.1.2.1 None
ERR4819012 Other lineage1.1.2 None
ERR2512423 Other lineage4.1.1.3 None
ERR3275941 RR-TB lineage4.3 nl
ERR4818272 Other lineage4.3.2 None
ERR4818261 Other lineage1.1.2 None
ERR4818484 Sensitive lineage3 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4818522 Pre-XDR-TB lineage3 None
ERR4818952 Other lineage3 None
ERR4818583 Other lineage4.3.3 None
ERR4817569 Other lineage4.3.4.1 None
SRR5341453 Sensitive None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007178 Pre-XDR-TB lineage4.1.1.3.1 None
ERR4817554 Other lineage1.1.1 None
ERR4817584 MDR-TB lineage3 None
SRR5341366 Sensitive lineage4 None
SRR5341387 Other lineage4 None
SAMEA3501067 RR-TB lineage4.8 None
ERR4819206 Other lineage4.8 None
SRR5341396 Other lineage4 None
ERR4820290 Other lineage3 None
ERR4820723 RR-TB lineage4.4.1.1 None
SRR5153833 Other lineage2.2.1 None
SRR5341425 Other lineage4 None
ERR2514137 Pre-XDR-TB lineage2.2.1 None