EBG00000313339 - n.2599A>T
Drug resistance types
63 Sensitive
16 RR-TB
85 HR-TB
38 MDR-TB
15 Pre-XDR-TB
1 XDR-TB
95 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.2 | 1 |
| lineage2.2.1 | 30 |
| lineage4.9 | 129 |
| lineage3.1.3 | 1 |
| lineage4.1.2.1 | 6 |
| lineage2.2.1.1 | 4 |
| lineage4.6.2.2 | 3 |
| lineage4 | 4 |
| La1.8.1 | 9 |
| lineage4.6.5 | 2 |
| La1.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage3 | 11 |
| lineage4.8 | 5 |
| lineage4.3.4.1 | 3 |
| La3;lineage4.9 | 9 |
| lineage4.3.2.1 | 2 |
| La1;lineage4.9 | 2 |
| lineage3;lineage4 | 1 |
| La1.7;lineage4.9 | 6 |
| lineage2.2;lineage4 | 1 |
| lineage4.2.1 | 3 |
| lineage6 | 1 |
| lineage2.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.1.3 | 5 |
| lineage6.1.2 | 2 |
| lineage2;lineage4 | 1 |
| La1.2.BCG | 2 |
| La3;lineage4 | 1 |
| lineage4.3.3 | 7 |
| 3 | |
| lineage4.6.3;lineage4.9 | 1 |
| lineage3.1 | 1 |
| La1.6 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 2 |
| La2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage6.1.3 | 2 |
| lineage5.2 | 3 |
| lineage4.1.1.1 | 2 |
| lineage1.1.2 | 4 |
| La1.7;lineage3.1;lineage4 | 1 |
| La2 | 1 |
| La3;lineage4.3.4 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage5.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage2.2.2 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.5 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage2.2 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.3.4.2 | 2 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 313 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769421 | Other | La1.2 | None | SRR14802191 | Sensitive | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR8692790 | Other | lineage4 | None | SRR1791747 | Other | La1.8.1 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR10315466 | RR-TB | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR6866410 | HR-TB | lineage4.9 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | SRR1238559 | Other | lineage4.9 | None | ERR3077969 | Other | La1.3 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR5341408 | Sensitive | lineage3 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR2229198 | Sensitive | lineage4.8 | None | ERR3797019 | Other | La1.8.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR1173740 | Other | lineage3;lineage4 | None | SRR5341387 | Other | lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4816417 | Other | lineage4.9 | None | ERR6359064 | Sensitive | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR9787362 | Sensitive | lineage6 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | SRR1173281 | Other | lineage3 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1158918 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | ERR9787030 | RR-TB | lineage6.1.2 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR1915487 | Other | La1.2.BCG | None | SRR8692897 | Other | lineage4.9 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR4769442 | Sensitive | lineage4.9 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR28045146 | Other | lineage4.3.3 | None | SRR8692905 | Sensitive | None | ERR1063896 | HR-TB | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR28351442 | HR-TB | lineage3.1 | None | ERR9786597 | Other | lineage4.6.2.2 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR10993951 | RR-TB | La1.6 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR3797067 | Other | La1.8.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR9787033 | Sensitive | lineage6.1.2 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR926157 | Other | lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR18715102 | MDR-TB | lineage2.2.1 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR9787256 | Other | lineage6.1.3 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR1172177 | HR-TB | lineage4.1.1.1 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR13888750 | Other | La2 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR8692782 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR8692800 | Sensitive | lineage4 | None | SRR1180996 | Other | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR4800231 | Pre-XDR-TB | lineage2.2.1 | in | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR12420628 | MDR-TB | lineage2.2.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR1163055 | MDR-TB | lineage4.8 | None | ERR4796254 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | DRR185024 | Other | lineage2.2.2 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR21713567 | Other | lineage4.5 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR26159035 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR4816711 | Sensitive | lineage4.1.1.1 | gb | ERR9992784 | XDR-TB | lineage2.2.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR245675 | Sensitive | lineage1.1.2 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR867566 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9786076 | Other | lineage3 | None | SRR6046839 | Other | lineage4.9 | None | ERR4586795 | Other | La1.8.1 | None | ERR9786592 | Other | lineage4.3.4.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR7535082 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | ERR970443 | RR-TB | lineage2.2.1.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR1063888 | HR-TB | lineage1.1.2 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR7236177 | Other | La1.8.1 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR6982141 | Other | lineage4.3.3 | None | ERR926160 | Other | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4796351 | Sensitive | lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR5979407 | Other | lineage3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3468488 | Other | La1.8.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | ERR10796597 | Other | lineage4.3.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR3797086 | Sensitive | lineage4.9 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR5341319 | Other | lineage3 | None | ERR11465579 | Sensitive | lineage4.3.4.1 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | SRR8692887 | Other | None | ERR3797029 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None |
|---|
