EBG00000313339 - n.2599A>T
Drug resistance types
99 Sensitive
21 RR-TB
72 HR-TB
44 MDR-TB
18 Pre-XDR-TB
0 XDR-TB
106 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 13 |
| lineage4.9 | 60 |
| La1.7.1 | 2 |
| lineage4.1.2.1 | 12 |
| lineage4 | 73 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1 | 38 |
| lineage4.5 | 1 |
| 46 | |
| lineage4;lineage2.2 | 1 |
| lineage4.6.2.2 | 6 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1.3 | 6 |
| lineage4.3.2.1 | 3 |
| lineage2.1 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.2 | 6 |
| lineage3 | 12 |
| lineage4.8 | 6 |
| lineage4.1.1 | 3 |
| lineage3.1.3 | 1 |
| lineage4.3.3 | 7 |
| lineage3.1 | 1 |
| lineage4.9;lineage2.1 | 1 |
| lineage5.2 | 3 |
| lineage2.2.1.1 | 5 |
| La1.3 | 1 |
| lineage4.1 | 1 |
| lineage5.1.1 | 2 |
| lineage4.1.2 | 2 |
| lineage4.7 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.2.1 | 3 |
| lineage2.2.2 | 3 |
| lineage4.9.1 | 1 |
| lineage2.2 | 2 |
| La1 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage4.4.1.1 | 4 |
| La1.2 | 1 |
| lineage4.9;La1.3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.5 | 2 |
| lineage1.1.3.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage6 | 4 |
| lineage6.1.3 | 1 |
| La1.6 | 1 |
| La2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 360 |
Geographic prevalence
Country level data for this variant is available for 17 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1791747 | Other | La1.8.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR18715102 | MDR-TB | lineage2.2.1 | None | SRR8692810 | Other | lineage4.9 | None | SRR8692807 | Other | lineage4.9 | None | SRR21713567 | Sensitive | lineage4.5 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692854 | Other | lineage4.9 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692858 | Sensitive | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692778 | Other | lineage4.9 | None | SRR8692908 | Other | lineage4.9 | None | SRR8692771 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692855 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692907 | Other | lineage4.9 | None | SRR8692791 | Other | lineage4.9 | None | SRR8692828 | Other | lineage4.9 | None | SRR8692894 | Other | lineage4.9 | None | SRR8692899 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR8692832 | Other | lineage4.9 | None | ERR4814312 | Other | lineage4 | None | ERR4815121 | HR-TB | lineage4.6.2.2 | None | ERR181744 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR1750897 | Sensitive | lineage4.1.1.3 | zw | ERR1750896 | Sensitive | lineage2.2.1 | zw | ERR1750926 | Other | lineage4.3.2.1 | za | ERR702405 | Sensitive | lineage2.1 | None | ERR1750907 | RR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4816110 | Sensitive | lineage4.9 | gb | SRR3675246 | Sensitive | lineage4 | None | ERR4817010 | HR-TB | lineage1.2.1.2.1 | None | ERR4817070 | Other | lineage1.1.2 | None | ERR4816231 | Other | lineage4 | None | ERR212123 | Other | None | ERR3275709 | HR-TB | lineage3 | nl | ERR4816417 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR212138 | HR-TB | lineage4 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816571 | Other | lineage1.1.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR216978 | Sensitive | lineage4.3.4.2.1 | None | ERR4816755 | Other | lineage4.1.1.3 | None | ERR4816711 | Sensitive | lineage4.1.1 | gb | ERR2513405 | Other | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513259 | Other | lineage3 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5341453 | Sensitive | None | ERR4817584 | MDR-TB | lineage3 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4817619 | Other | lineage4.1.2.1 | gb | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341396 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2514146 | Other | lineage4.1.2.1 | gb | SRR5341400 | HR-TB | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819840 | Sensitive | lineage4.8 | gb | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | ERR1023509 | Other | None | SRR5341308 | Sensitive | lineage4 | None | ERR2517074 | Pre-XDR-TB | lineage3 | gb | SRR5341323 | Sensitive | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341319 | Other | lineage3 | None | SRR5341467 | Other | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341461 | Sensitive | lineage4 | None | ERR4820083 | Sensitive | lineage3.1 | gb | ERR4821045 | Sensitive | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR4821057 | HR-TB | lineage4 | None | SAMN02403525 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6044780 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR2693227 | Other | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SRR6046839 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045010 | Other | lineage4 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR2815606 | Other | La1.7.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046376 | Other | lineage3 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR6511621 | HR-TB | None | SRR6152838 | Other | lineage2.2.1.1 | ca | ERR3077969 | Other | La1.3 | None | ERR4832031 | HR-TB | lineage2.2.1 | vn | ERR502470 | RR-TB | lineage4.9 | None | ERR4872107 | MDR-TB | lineage4.6.2.2 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR7496471 | Sensitive | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR8600276 | Other | La1.8.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | ERR323107 | Other | lineage4 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | DRR185024 | Other | lineage2.2.2 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR037504 | Other | lineage4.9.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035122 | Sensitive | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR1063857 | HR-TB | None | ERR1063896 | Sensitive | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR1213932 | Sensitive | lineage4.1.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063888 | HR-TB | lineage1.1.2 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR10796597 | Other | lineage4 | None | ERR1213928 | MDR-TB | lineage4.3.3 | pe | ERR3283028 | Other | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468443 | Other | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3468776 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797021 | Other | La1.8.1 | None | ERR3797019 | Other | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR4024892 | Sensitive | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR405209 | Sensitive | lineage4 | None | ERR4024991 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4586795 | Other | La1.8.1 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4132460 | MDR-TB | lineage2.2.1 | None | ERR4188247 | HR-TB | None | ERR4769421 | Other | La1.2 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4799378 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4800231 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5864556 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812495 | Other | lineage4.1.2.1 | pe | ERR5979407 | Other | lineage3 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359064 | Sensitive | lineage4.9 | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866410 | Sensitive | None | ERR6866022 | Other | None | ERR6865855 | Sensitive | lineage4.1.2.1 | None | ERR6866241 | Other | lineage4.3.2 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR751326 | Sensitive | lineage4 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | None | ERR9119513 | MDR-TB | lineage4.6.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR970443 | RR-TB | lineage2.2.1.1 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9992784 | Pre-XDR-TB | lineage2.2.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787033 | Sensitive | lineage6 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787336 | Other | lineage6 | None | ERR9787362 | Sensitive | lineage6 | None | ERR983241 | MDR-TB | lineage2.2.1 | None | ERR9786613 | Sensitive | lineage4.1.2.1 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | SRR1167271 | MDR-TB | lineage4.1.1.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1165306 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1169150 | MDR-TB | lineage4.4.1.1 | None | SRR1169145 | MDR-TB | lineage4.1.1 | None | SRR1172177 | MDR-TB | lineage4.1.1 | None | SRR1172090 | MDR-TB | lineage4.4.1.1 | None | SRR1172987 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173777 | Other | lineage4 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1180996 | HR-TB | lineage4 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR13888750 | Other | La2 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14802191 | Sensitive | lineage2.2.1 | None |
|---|
