TB-Profiler result

Run: SRR8692790
Summary

Run ID: SRR8692790

Sample name:

Date: 13-08-2023 19:09:12

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761160 p.Leu452Met missense_variant 0.13 rifampicin
rplC 801268 p.Cys154Arg missense_variant 0.64 linezolid
ethA 4326426 c.1047delT frameshift_variant 0.18 ethionamide, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5270 p.Glu11* stop_gained 0.2
gyrB 5494 c.255G>A synonymous_variant 0.18
gyrB 5504 p.His89Asn missense_variant 0.2
gyrB 5533 c.294G>A synonymous_variant 0.17
gyrB 6057 p.Ser273Ile missense_variant 0.14
gyrB 6125 p.Gly296Arg missense_variant 0.22
gyrB 6160 c.921C>A synonymous_variant 0.25
gyrA 6331 c.-971A>G upstream_gene_variant 0.12
gyrB 6767 p.Gly510Cys missense_variant 0.15
gyrA 7240 c.-62C>A upstream_gene_variant 0.22
gyrA 7412 c.111C>G synonymous_variant 0.29
gyrA 7421 c.120G>C synonymous_variant 0.29
gyrA 7424 c.123G>T synonymous_variant 0.29
gyrA 7427 c.126G>C synonymous_variant 0.33
gyrA 7433 c.132G>C synonymous_variant 0.33
gyrA 7442 c.141G>C synonymous_variant 0.33
gyrA 7451 c.150C>G synonymous_variant 0.33
gyrA 7457 c.156T>C synonymous_variant 0.33
gyrA 7475 c.174A>C synonymous_variant 0.33
gyrA 7480 p.Phe60Tyr missense_variant 0.33
gyrA 7484 c.183T>C synonymous_variant 0.4
gyrA 7487 c.186C>G synonymous_variant 0.4
gyrA 7502 c.201C>T synonymous_variant 0.33
gyrA 7506 p.Ser69Gly missense_variant 0.33
gyrA 7585 p.Ser95Thr missense_variant 0.29
gyrA 7595 c.294C>G synonymous_variant 0.25
gyrA 7607 c.306C>G synonymous_variant 0.25
gyrA 7631 c.330G>C synonymous_variant 0.33
gyrA 7637 c.336C>T synonymous_variant 0.33
gyrA 7658 c.357A>G synonymous_variant 0.43
gyrA 7661 c.360C>T synonymous_variant 0.43
gyrA 7664 c.363T>C synonymous_variant 0.43
gyrA 7670 c.369A>G synonymous_variant 0.43
gyrA 7676 c.375G>C synonymous_variant 0.43
gyrA 7679 c.378G>C synonymous_variant 0.43
gyrA 7683 c.382_384delAGGinsCGC synonymous_variant 0.5
gyrA 7694 c.393A>G synonymous_variant 0.57
gyrA 7700 c.399G>T synonymous_variant 0.57
gyrA 7706 c.405C>T synonymous_variant 0.57
gyrA 7709 c.408G>A synonymous_variant 0.57
gyrA 7710 c.409T>C synonymous_variant 0.57
gyrA 7715 c.414G>C synonymous_variant 0.57
gyrA 7728 c.427_429delAGGinsCGT synonymous_variant 0.6
gyrA 7752 p.Asp151Asn missense_variant 0.71
gyrA 7763 c.462T>C synonymous_variant 0.62
gyrA 7769 c.468C>T synonymous_variant 0.56
gyrA 7775 c.474C>G synonymous_variant 0.5
gyrA 7778 c.477G>C synonymous_variant 0.5
gyrA 7784 c.483A>G synonymous_variant 0.44
gyrA 7796 c.495G>C synonymous_variant 0.4
gyrA 7799 c.498A>G synonymous_variant 0.33
gyrA 7802 c.501C>G synonymous_variant 0.33
gyrA 7804 p.Ser168Ile missense_variant 0.17
gyrA 7814 c.513C>G synonymous_variant 0.31
gyrA 7832 c.531G>T synonymous_variant 0.31
gyrA 7835 c.534A>G synonymous_variant 0.33
gyrA 7841 c.540C>T synonymous_variant 0.27
gyrA 7853 c.552C>T synonymous_variant 0.25
gyrA 7859 c.558A>C synonymous_variant 0.24
gyrA 7865 c.564T>C synonymous_variant 0.22
gyrA 8020 p.Thr240Asn missense_variant 0.2
gyrA 8461 p.Arg387Leu missense_variant 0.22
gyrA 8627 c.1326C>A synonymous_variant 0.12
gyrA 9301 p.Ala667Asp missense_variant 0.18
gyrA 9304 p.Gly668Asp missense_variant 0.27
gyrA 9325 p.Ser675* stop_gained 0.15
gyrA 9372 p.Arg691Trp missense_variant 0.18
gyrA 9502 p.Arg734Leu missense_variant 0.15
fgd1 491164 p.Arg128Trp missense_variant 0.33
fgd1 491693 p.Gly304Val missense_variant 0.2
fgd1 491728 p.Asp316Asn missense_variant 0.25
mshA 575397 p.Arg17His missense_variant 0.17
mshA 575556 p.Val70Ala missense_variant 0.17
mshA 575864 c.517T>C synonymous_variant 0.14
mshA 575905 c.558G>C synonymous_variant 0.12
mshA 575908 c.561A>C synonymous_variant 0.12
mshA 575925 p.Gly193Ala missense_variant 0.12
mshA 575935 c.588G>C synonymous_variant 0.12
mshA 575936 p.Pro197Ala missense_variant 0.12
mshA 575945 p.Thr200Ser missense_variant 0.13
mshA 575953 c.606G>T synonymous_variant 0.15
mshA 575965 c.618C>G synonymous_variant 0.14
mshA 576256 c.909C>A synonymous_variant 0.14
mshA 576605 p.Ala420Ser missense_variant 0.18
ccsA 619781 c.-110T>C upstream_gene_variant 0.15
ccsA 619932 c.42C>A synonymous_variant 0.27
ccsA 620478 p.Phe196Leu missense_variant 0.18
ccsA 620541 c.651G>T synonymous_variant 0.15
ccsA 620557 p.Gln223Lys missense_variant 0.14
ccsA 620563 p.Leu225Met missense_variant 0.15
ccsA 620787 c.897C>A synonymous_variant 0.2
rpoB 760410 p.Arg202Ser missense_variant 0.22
rpoB 760424 c.618C>A synonymous_variant 0.29
rpoB 760541 c.735G>C synonymous_variant 0.22
rpoB 760547 c.741G>C synonymous_variant 0.25
rpoB 760561 c.757_758delCG frameshift_variant 0.25
rpoB 760567 p.Ser254Trp missense_variant 0.25
rpoB 760568 c.762_763insGC frameshift_variant 0.25
rpoB 760591 p.Val262Ala missense_variant 0.25
rpoB 760601 c.795C>T synonymous_variant 0.33
rpoB 760611 c.805T>C synonymous_variant 0.3
rpoB 760625 c.819C>G synonymous_variant 0.23
rpoB 760634 c.828T>C synonymous_variant 0.23
rpoB 760646 c.840C>G synonymous_variant 0.19
rpoB 760655 c.849A>G synonymous_variant 0.2
rpoB 760661 c.855A>C synonymous_variant 0.17
rpoB 760670 c.864G>C synonymous_variant 0.12
rpoB 760674 c.868T>C synonymous_variant 0.12
rpoB 760715 c.909C>T synonymous_variant 0.12
rpoB 760724 c.918T>C synonymous_variant 0.13
rpoB 760730 c.924T>C synonymous_variant 0.13
rpoB 760815 p.Glu337* stop_gained 0.14
rpoB 761061 c.1257delC frameshift_variant 0.14
rpoB 761171 c.1365C>T synonymous_variant 0.15
rpoB 761469 p.Val555Phe missense_variant 0.13
rpoB 761706 p.Asp634Asn missense_variant 0.2
rpoC 763028 c.-342T>C upstream_gene_variant 0.2
rpoC 763031 c.-339T>C upstream_gene_variant 0.22
rpoC 763034 c.-336C>A upstream_gene_variant 0.22
rpoC 763049 c.-321G>A upstream_gene_variant 0.2
rpoC 763053 c.-317_-315delTTGinsCTC upstream_gene_variant 0.2
rpoC 763070 c.-300T>C upstream_gene_variant 0.25
rpoC 763076 c.-294C>G upstream_gene_variant 0.27
rpoC 763079 c.-291C>G upstream_gene_variant 0.27
rpoC 763082 c.-288C>T upstream_gene_variant 0.3
rpoC 763085 c.-285C>G upstream_gene_variant 0.3
rpoC 763103 c.-267G>C upstream_gene_variant 0.3
rpoC 763115 c.-255T>C upstream_gene_variant 0.3
rpoC 763136 c.-234C>T upstream_gene_variant 0.23
rpoC 763148 c.-222G>C upstream_gene_variant 0.27
rpoC 763158 c.-212C>T upstream_gene_variant 0.27
rpoC 763166 c.-204A>G upstream_gene_variant 0.18
rpoC 763169 c.-201A>G upstream_gene_variant 0.18
rpoC 763181 c.-189G>C upstream_gene_variant 0.18
rpoC 763187 c.-183C>G upstream_gene_variant 0.18
rpoC 763190 c.-180C>T upstream_gene_variant 0.18
rpoC 763274 c.-96G>T upstream_gene_variant 0.22
rpoC 763378 p.Asp3Glu missense_variant 0.25
rpoC 763461 p.Pro31Leu missense_variant 0.14
rpoC 763573 c.204G>C synonymous_variant 0.18
rpoC 763594 c.225C>T synonymous_variant 0.13
rpoC 763633 c.264T>C synonymous_variant 0.17
rpoC 764102 p.Val245Ile missense_variant 0.2
rpoC 764549 p.Pro394Thr missense_variant 0.29
rpoC 764662 c.1293G>C synonymous_variant 0.12
rpoC 764719 c.1350G>A synonymous_variant 0.15
rpoC 764746 c.1377G>T synonymous_variant 0.22
rpoC 764752 c.1383G>C synonymous_variant 0.24
rpoC 764758 c.1389C>G synonymous_variant 0.24
rpoC 764764 c.1395T>C synonymous_variant 0.24
rpoC 764800 c.1431G>A synonymous_variant 0.18
rpoC 764803 c.1434C>T synonymous_variant 0.18
rpoC 764809 c.1440C>T synonymous_variant 0.18
rpoC 764815 c.1446A>G synonymous_variant 0.25
rpoC 764827 c.1458G>C synonymous_variant 0.33
rpoC 765271 p.Lys634Asn missense_variant 0.13
rpoC 765754 p.Asp795Glu missense_variant 0.4
rpoC 765772 c.2403C>G synonymous_variant 0.4
rpoC 765778 c.2409C>G synonymous_variant 0.4
rpoC 765779 p.Asp804Lys missense_variant 0.4
rpoC 765800 p.Phe811Leu missense_variant 0.38
rpoC 765811 c.2442T>C synonymous_variant 0.38
rpoC 765814 c.2445A>C synonymous_variant 0.38
rpoC 765820 c.2451G>C synonymous_variant 0.38
rpoC 765823 c.2454C>G synonymous_variant 0.33
rpoC 765826 c.2457T>C synonymous_variant 0.3
rpoC 765834 p.Gly822Asp missense_variant 0.18
rpoC 765861 p.Phe831Tyr missense_variant 0.33
rpoC 765875 p.Val836Ile missense_variant 0.42
rpoC 765886 c.2517C>G synonymous_variant 0.38
rpoC 765892 c.2523T>C synonymous_variant 0.38
rpoC 765898 c.2529C>T synonymous_variant 0.33
rpoC 765934 c.2565C>T synonymous_variant 0.13
rpoC 765937 c.2568T>C synonymous_variant 0.13
rpoC 765940 c.2571A>T synonymous_variant 0.14
rpoC 765946 c.2577C>T synonymous_variant 0.14
rpoC 765947 c.2578T>C synonymous_variant 0.14
rpoC 765952 c.2583G>C synonymous_variant 0.14
rpoC 765962 c.2593T>C synonymous_variant 0.14
rpoC 765967 c.2598C>T synonymous_variant 0.14
rpoC 766996 c.3627C>T synonymous_variant 0.18
rpoC 767002 c.3633G>C synonymous_variant 0.18
rpoC 767014 c.3645G>C synonymous_variant 0.18
rpoC 767023 c.3654C>T synonymous_variant 0.21
rpoC 767035 c.3666G>C synonymous_variant 0.21
rpoC 767098 c.3729T>C synonymous_variant 0.24
rpoC 767104 c.3735C>G synonymous_variant 0.27
rpoC 767106 p.Asn1246Met missense_variant 0.27
rpoC 767119 c.3750A>G synonymous_variant 0.25
rpoC 767151 p.Gly1261Val missense_variant 0.17
rpoC 767155 c.3786C>G synonymous_variant 0.17
rpoC 767162 p.Asn1265Ala missense_variant 0.15
mmpL5 775847 c.2634G>T synonymous_variant 0.17
mmpL5 775851 p.Ser877Thr missense_variant 0.17
mmpL5 775856 c.2625T>C synonymous_variant 0.23
mmpL5 775862 c.2619G>C synonymous_variant 0.15
mmpL5 775865 c.2616T>C synonymous_variant 0.15
mmpL5 775885 p.Ile866Leu missense_variant 0.14
mmpL5 775886 c.2595A>T synonymous_variant 0.14
mmpL5 775889 c.2592C>G synonymous_variant 0.13
mmpL5 775909 p.Leu858Ile missense_variant 0.14
mmpL5 775916 c.2565T>C synonymous_variant 0.14
mmpL5 775949 c.2532G>C synonymous_variant 0.11
mmpL5 775955 p.Ile842Met missense_variant 0.12
mmpL5 775961 c.2520C>G synonymous_variant 0.12
mmpL5 775981 p.Leu834Met missense_variant 0.13
mmpL5 776100 p.Thr794Ile missense_variant 0.15
mmpL5 776830 p.His551Asn missense_variant 0.15
mmpS5 779615 c.-710C>G upstream_gene_variant 0.29
rpsL 781506 c.-54C>T upstream_gene_variant 0.2
rpsL 781644 p.Gln29Lys missense_variant 0.17
rpsL 781682 c.123T>C synonymous_variant 0.13
rpsL 781715 c.156T>C synonymous_variant 0.12
rpsL 781728 c.169T>C synonymous_variant 0.12
rpsL 781736 p.Ser59Arg missense_variant 0.12
rpsL 781737 p.Gln60Gly missense_variant 0.12
rpsL 781742 c.183C>T synonymous_variant 0.14
rpsL 781751 c.192G>C synonymous_variant 0.13
rpsL 781754 c.195G>C synonymous_variant 0.13
rpsL 781760 c.201T>C synonymous_variant 0.14
rpsL 781769 c.210G>A synonymous_variant 0.14
rpsL 781805 c.246G>C synonymous_variant 0.21
rpsL 781811 c.252C>T synonymous_variant 0.21
rpsL 781814 c.255C>T synonymous_variant 0.21
rpsL 781817 c.258G>T synonymous_variant 0.2
rpsL 781829 c.270G>C synonymous_variant 0.14
rpsL 781832 c.273T>G synonymous_variant 0.13
rpsL 781859 c.300T>C synonymous_variant 0.13
rpsL 781868 c.309T>C synonymous_variant 0.13
rpsL 781871 c.312G>C synonymous_variant 0.13
rpsL 781874 p.Gln105His missense_variant 0.13
rpsL 781875 p.Gly106Cys missense_variant 0.13
rpsL 781892 c.333A>G synonymous_variant 0.11
rpsL 781916 c.357T>G synonymous_variant 0.12
rplC 800612 c.-197A>G upstream_gene_variant 0.18
rplC 800618 c.-191T>C upstream_gene_variant 0.15
rplC 800633 c.-176T>C upstream_gene_variant 0.17
rplC 800639 c.-170C>T upstream_gene_variant 0.18
rplC 800655 c.-154A>G upstream_gene_variant 0.18
rplC 801150 c.342G>T synonymous_variant 0.17
fbiC 1303277 p.Ala116Asp missense_variant 0.17
fbiC 1303703 p.Gly258Asp missense_variant 0.2
fbiC 1304695 p.Trp589Arg missense_variant 0.18
fbiC 1304789 p.Ala620Asp missense_variant 0.15
Rv1258c 1406500 p.Leu281Met missense_variant 0.17
Rv1258c 1406686 p.Val219Ile missense_variant 0.92
Rv1258c 1406832 p.Gly170Val missense_variant 0.22
Rv1258c 1407134 p.Phe69Leu missense_variant 0.33
embR 1416249 p.Asp367Tyr missense_variant 0.17
embR 1416533 p.Gly272Val missense_variant 0.15
embR 1416577 c.771G>A synonymous_variant 0.22
embR 1416907 c.441G>T synonymous_variant 0.18
embR 1417259 p.Ser30* stop_gained 0.17
rrs 1471653 n.-193C>A upstream_gene_variant 0.17
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471674 n.-172G>A upstream_gene_variant 0.15
rrs 1471704 n.-142C>A upstream_gene_variant 0.15
rrs 1471773 n.-73G>T upstream_gene_variant 0.2
rrs 1471866 n.21C>T non_coding_transcript_exon_variant 0.25
rrs 1471922 n.78delT non_coding_transcript_exon_variant 0.55
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.6
rrs 1471931 n.87delA non_coding_transcript_exon_variant 0.6
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.55
rrs 1471979 n.134T>C non_coding_transcript_exon_variant 0.7
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 0.64
rrs 1472019 n.174G>A non_coding_transcript_exon_variant 0.55
rrs 1472023 n.178G>T non_coding_transcript_exon_variant 0.5
rrs 1472029 n.184C>T non_coding_transcript_exon_variant 0.38
rrs 1472030 n.185G>T non_coding_transcript_exon_variant 0.38
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 0.43
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 0.43
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 0.38
rrs 1472043 n.198T>G non_coding_transcript_exon_variant 0.44
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 0.5
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 0.55
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.62
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 0.62
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.71
rrs 1472176 n.331G>A non_coding_transcript_exon_variant 0.17
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.4
rrs 1472317 n.472G>T non_coding_transcript_exon_variant 0.22
rrs 1472360 n.515G>T non_coding_transcript_exon_variant 0.18
rrs 1472755 n.910G>A non_coding_transcript_exon_variant 0.8
rrs 1472847 n.1002G>C non_coding_transcript_exon_variant 0.18
rrs 1472849 n.1004C>G non_coding_transcript_exon_variant 0.18
rrs 1472850 n.1005T>C non_coding_transcript_exon_variant 0.18
rrs 1472857 n.1012A>G non_coding_transcript_exon_variant 0.17
rrs 1472858 n.1013G>T non_coding_transcript_exon_variant 0.17
rrs 1472859 n.1014G>C non_coding_transcript_exon_variant 0.17
rrs 1472860 n.1015C>G non_coding_transcript_exon_variant 0.23
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.5
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.5
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.62
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.62
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.56
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.56
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.56
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.42
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.42
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.12
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.12
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.43
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.33
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.29
rrl 1473814 n.157A>C non_coding_transcript_exon_variant 0.29
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 0.29
rrl 1473816 n.159C>G non_coding_transcript_exon_variant 0.29
rrl 1473828 n.171G>C non_coding_transcript_exon_variant 0.29
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 0.29
rrl 1473830 n.173T>G non_coding_transcript_exon_variant 0.29
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 0.29
rrl 1473869 n.212C>A non_coding_transcript_exon_variant 0.29
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 0.29
rrl 1473887 n.230T>A non_coding_transcript_exon_variant 0.29
rrl 1473888 n.231T>A non_coding_transcript_exon_variant 0.29
rrl 1473908 n.251C>A non_coding_transcript_exon_variant 0.4
rrl 1473994 n.337C>A non_coding_transcript_exon_variant 0.4
rrl 1474135 n.478G>A non_coding_transcript_exon_variant 0.3
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.3
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.3
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.5
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.5
rrl 1474185 n.528G>A non_coding_transcript_exon_variant 0.5
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474495 n.838G>A non_coding_transcript_exon_variant 0.33
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 0.33
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 0.33
rrl 1474498 n.841G>A non_coding_transcript_exon_variant 0.33
rrl 1474505 n.848C>T non_coding_transcript_exon_variant 0.4
rrl 1474506 n.849C>G non_coding_transcript_exon_variant 0.4
rrl 1474507 n.850G>T non_coding_transcript_exon_variant 0.4
rrl 1474508 n.851C>T non_coding_transcript_exon_variant 0.33
rrl 1474552 n.895C>T non_coding_transcript_exon_variant 0.22
rrl 1474694 n.1037C>A non_coding_transcript_exon_variant 0.22
rrl 1474708 n.1051C>A non_coding_transcript_exon_variant 0.22
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.2
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.25
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.4
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.44
rrl 1475158 n.1501C>A non_coding_transcript_exon_variant 0.67
rrl 1475187 n.1530C>A non_coding_transcript_exon_variant 0.4
rrl 1475363 n.1706C>T non_coding_transcript_exon_variant 0.4
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.4
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.4
rrl 1475381 n.1724G>T non_coding_transcript_exon_variant 0.4
rrl 1475382 n.1725A>C non_coding_transcript_exon_variant 0.4
rrl 1475395 n.1738T>G non_coding_transcript_exon_variant 0.33
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.33
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.33
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.29
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.29
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.5
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 0.38
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 0.38
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 0.33
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 0.33
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.33
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.33
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 0.33
rrl 1475544 n.1887A>T non_coding_transcript_exon_variant 0.3
rrl 1475634 n.1977G>A non_coding_transcript_exon_variant 0.33
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.5
rrl 1475759 n.2102C>T non_coding_transcript_exon_variant 0.57
rrl 1475762 n.2105G>T non_coding_transcript_exon_variant 0.67
rrl 1475763 n.2106C>T non_coding_transcript_exon_variant 0.67
rrl 1475764 n.2107A>C non_coding_transcript_exon_variant 0.67
rrl 1475765 n.2108A>G non_coding_transcript_exon_variant 0.57
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.56
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.36
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.36
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.36
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.3
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.33
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.38
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.38
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.38
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.38
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.5
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.43
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 0.38
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 0.18
rrl 1476095 n.2438C>T non_coding_transcript_exon_variant 0.18
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 0.17
rrl 1476188 n.2531C>A non_coding_transcript_exon_variant 0.17
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.41
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.44
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.41
rrl 1476251 n.2594T>G non_coding_transcript_exon_variant 0.47
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.5
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.5
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.46
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.45
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 0.45
rrl 1476317 n.2660C>A non_coding_transcript_exon_variant 0.17
rrl 1476518 n.2861G>T non_coding_transcript_exon_variant 0.18
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.3
rrl 1476563 n.2906G>T non_coding_transcript_exon_variant 0.25
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.3
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.22
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.22
fabG1 1673910 p.Lys157Asn missense_variant 0.33
inhA 1674620 p.Pro140His missense_variant 0.22
inhA 1674771 c.570C>G synonymous_variant 0.12
inhA 1674774 c.573A>G synonymous_variant 0.19
inhA 1674780 c.579T>G synonymous_variant 0.19
inhA 1674789 c.588G>C synonymous_variant 0.18
inhA 1674795 c.594G>C synonymous_variant 0.24
inhA 1674801 c.600T>C synonymous_variant 0.25
inhA 1674804 c.603G>C synonymous_variant 0.25
inhA 1674810 c.609C>G synonymous_variant 0.27
inhA 1674822 c.621C>G synonymous_variant 0.25
inhA 1674827 p.Glu209Ala missense_variant 0.25
inhA 1674839 p.Ala213Asp missense_variant 0.31
inhA 1674846 p.Ile215Met missense_variant 0.36
inhA 1674848 p.Gln216Arg missense_variant 0.36
inhA 1674858 c.657G>A synonymous_variant 0.4
inhA 1674866 p.Trp222* stop_gained 0.22
inhA 1674879 c.678T>A synonymous_variant 0.44
inhA 1674883 p.Ile228Val missense_variant 0.44
inhA 1674904 p.Ala235Pro missense_variant 0.33
inhA 1674909 c.708G>C synonymous_variant 0.25
inhA 1674915 c.714C>G synonymous_variant 0.33
inhA 1674930 c.729C>T synonymous_variant 0.29
rpsA 1833745 c.204G>C synonymous_variant 0.14
rpsA 1833760 c.219C>T synonymous_variant 0.14
rpsA 1833787 c.246C>G synonymous_variant 0.15
rpsA 1833790 c.249T>C synonymous_variant 0.14
rpsA 1833793 c.252C>T synonymous_variant 0.14
rpsA 1833802 c.261A>G synonymous_variant 0.14
rpsA 1833808 c.267G>C synonymous_variant 0.14
rpsA 1833811 c.270G>T synonymous_variant 0.14
rpsA 1833829 c.288A>G synonymous_variant 0.15
rpsA 1833832 c.291G>A synonymous_variant 0.15
rpsA 1833838 c.297G>C synonymous_variant 0.16
rpsA 1833841 c.300C>G synonymous_variant 0.15
rpsA 1833847 c.306C>G synonymous_variant 0.15
rpsA 1834090 c.549G>T synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.13
rpsA 1834264 c.723G>C synonymous_variant 0.13
rpsA 1834279 c.738C>T synonymous_variant 0.12
rpsA 1834294 c.753G>C synonymous_variant 0.12
rpsA 1834299 p.Gln253Pro missense_variant 0.12
rpsA 1834303 c.762T>C synonymous_variant 0.12
rpsA 1834306 c.765T>C synonymous_variant 0.12
rpsA 1834348 c.807T>C synonymous_variant 0.16
rpsA 1834361 c.820T>C synonymous_variant 0.15
rpsA 1834366 c.825A>G synonymous_variant 0.15
rpsA 1834387 c.846C>T synonymous_variant 0.15
rpsA 1834396 c.855G>C synonymous_variant 0.17
rpsA 1834411 c.870T>C synonymous_variant 0.14
rpsA 1834417 c.876G>C synonymous_variant 0.13
rpsA 1834423 c.882G>C synonymous_variant 0.12
rpsA 1834451 c.910T>C synonymous_variant 0.18
rpsA 1834456 c.915T>G synonymous_variant 0.19
rpsA 1834468 c.927A>G synonymous_variant 0.2
rpsA 1834475 p.Arg312Ser missense_variant 0.17
rpsA 1834489 c.948T>C synonymous_variant 0.14
rpsA 1834666 c.1125G>C synonymous_variant 0.15
rpsA 1834667 p.Ala376Ser missense_variant 0.15
rpsA 1834690 c.1149T>C synonymous_variant 0.14
rpsA 1834700 p.Gln387Ala missense_variant 0.17
rpsA 1834705 c.1164C>G synonymous_variant 0.18
rpsA 1834732 c.1191T>C synonymous_variant 0.2
rpsA 1834738 p.Glu399Asp missense_variant 0.25
rpsA 1834753 c.1212T>C synonymous_variant 0.29
rpsA 1834759 c.1218A>C synonymous_variant 0.33
rpsA 1834765 p.Glu408Asp missense_variant 0.33
tlyA 1917823 c.-117C>A upstream_gene_variant 0.17
tlyA 1917955 p.Arg6Ser missense_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 0.3
tlyA 1917985 p.Leu16Met missense_variant 0.18
tlyA 1918431 p.Leu164Phe missense_variant 0.33
tlyA 1918455 c.516G>T synonymous_variant 0.25
tlyA 1918479 c.540G>T synonymous_variant 0.25
ndh 2101976 p.Pro356Gln missense_variant 0.29
ndh 2102052 p.Gly331Cys missense_variant 0.13
ndh 2102469 p.Leu192Met missense_variant 0.25
ndh 2102564 p.Arg160Leu missense_variant 0.13
katG 2154724 p.Arg463Leu missense_variant 0.15
katG 2154864 c.1248C>A synonymous_variant 0.22
katG 2155706 p.Pro136Ala missense_variant 0.13
katG 2155716 c.396T>C synonymous_variant 0.14
katG 2155722 c.390G>T synonymous_variant 0.14
katG 2155728 c.384G>C synonymous_variant 0.14
katG 2155964 p.Gln50Lys missense_variant 0.33
PPE35 2168560 p.Ala685Ser missense_variant 0.18
PPE35 2168562 p.Pro684His missense_variant 0.18
PPE35 2168679 p.Ser645Ile missense_variant 0.14
Rv1979c 2221758 c.1407A>G synonymous_variant 0.18
Rv1979c 2221977 p.Leu396Phe missense_variant 0.15
Rv1979c 2222021 c.1144C>A synonymous_variant 0.2
Rv1979c 2222086 p.Ala360Glu missense_variant 0.18
Rv1979c 2222318 p.Ala283Ser missense_variant 0.2
Rv1979c 2222337 c.828G>T synonymous_variant 0.17
Rv1979c 2222340 p.Met275Ile missense_variant 0.17
Rv1979c 2223056 p.Gly37Cys missense_variant 0.2
Rv1979c 2223213 c.-49G>T upstream_gene_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 0.2
Rv1979c 2223321 c.-157G>T upstream_gene_variant 0.2
pncA 2288894 c.348G>T synonymous_variant 0.17
pncA 2289135 p.Ala36Asp missense_variant 0.13
pncA 2289156 p.Arg29His missense_variant 0.14
pncA 2289735 c.-494C>A upstream_gene_variant 0.29
kasA 2517941 c.-174C>G upstream_gene_variant 0.17
kasA 2517950 c.-165C>G upstream_gene_variant 0.17
kasA 2517962 c.-153C>G upstream_gene_variant 0.15
kasA 2517968 c.-147T>C upstream_gene_variant 0.16
kasA 2517974 c.-141T>C upstream_gene_variant 0.16
kasA 2518318 c.204C>A synonymous_variant 0.29
eis 2714221 p.Ala371Asp missense_variant 0.17
eis 2714230 p.Thr368Lys missense_variant 0.15
folC 2746299 p.Glu434* stop_gained 0.17
folC 2746328 p.Arg424Leu missense_variant 0.15
folC 2746749 p.Gly284Trp missense_variant 0.25
folC 2746807 c.792G>T synonymous_variant 0.18
folC 2746842 p.Asp253Tyr missense_variant 0.25
folC 2746892 p.Arg236Leu missense_variant 0.29
folC 2747026 c.573C>A synonymous_variant 0.2
folC 2747065 c.534C>A synonymous_variant 0.22
folC 2747080 c.519C>A synonymous_variant 0.17
pepQ 2859568 p.Ala284Asp missense_variant 0.29
pepQ 2859827 p.Ala198Thr missense_variant 0.2
ribD 2987401 p.Arg188Leu missense_variant 0.14
Rv2752c 3064991 c.1201C>A synonymous_variant 0.13
Rv2752c 3065004 c.1188G>T synonymous_variant 0.13
Rv2752c 3065551 p.Ser214* stop_gained 0.2
Rv2752c 3065979 c.213T>C synonymous_variant 0.18
Rv2752c 3065982 c.210G>C synonymous_variant 0.18
Rv2752c 3065987 p.Asp69Asn missense_variant 0.18
Rv2752c 3065988 c.204A>G synonymous_variant 0.18
Rv2752c 3065993 p.Val67Ile missense_variant 0.18
Rv2752c 3065997 c.195C>G synonymous_variant 0.18
Rv2752c 3066002 p.Met64Leu missense_variant 0.18
Rv2752c 3066006 c.186G>C synonymous_variant 0.17
Rv2752c 3066018 c.174T>C synonymous_variant 0.17
Rv2752c 3066021 c.171C>G synonymous_variant 0.17
Rv2752c 3066024 c.168T>G synonymous_variant 0.17
Rv2752c 3066039 c.153C>T synonymous_variant 0.18
Rv2752c 3066042 c.150T>C synonymous_variant 0.17
Rv2752c 3066045 c.147T>C synonymous_variant 0.15
Rv2752c 3066054 c.138T>G synonymous_variant 0.17
Rv2752c 3066066 c.126T>C synonymous_variant 0.17
Rv2752c 3066069 c.121_123delTTGinsCTC synonymous_variant 0.15
Rv2752c 3066312 c.-121C>A upstream_gene_variant 0.14
Rv2752c 3067019 c.-828C>A upstream_gene_variant 0.29
Rv2752c 3067157 c.-966G>T upstream_gene_variant 0.29
thyX 3067901 c.45C>A synonymous_variant 0.17
thyX 3067989 c.-44C>A upstream_gene_variant 0.18
thyA 3073929 c.543T>C synonymous_variant 0.13
thyA 3073947 c.525G>C synonymous_variant 0.14
thyA 3073953 c.519T>C synonymous_variant 0.14
thyA 3073956 c.516G>C synonymous_variant 0.14
thyA 3073959 c.513T>C synonymous_variant 0.14
thyA 3073968 c.504C>G synonymous_variant 0.18
thyA 3073977 c.495A>G synonymous_variant 0.2
thyA 3073983 c.489C>G synonymous_variant 0.2
thyA 3073989 c.483T>C synonymous_variant 0.18
thyA 3073993 c.478_479delAGinsTC synonymous_variant 0.18
thyA 3073999 p.Arg158Lys missense_variant 0.29
thyA 3074004 c.468T>C synonymous_variant 0.25
thyA 3074031 c.441T>C synonymous_variant 0.22
thyA 3074034 c.438T>C synonymous_variant 0.25
thyA 3074037 c.435C>G synonymous_variant 0.25
thyA 3074046 c.426G>C synonymous_variant 0.2
thyA 3074053 p.Arg140Gln missense_variant 0.2
thyA 3074056 p.Glu139Pro missense_variant 0.2
thyA 3074061 c.411A>G synonymous_variant 0.2
thyA 3074064 c.408C>T synonymous_variant 0.2
thyA 3074316 p.Phe52Leu missense_variant 0.14
thyA 3074322 c.150C>A synonymous_variant 0.14
thyA 3074378 p.Gln32Lys missense_variant 0.15
ald 3086712 c.-108C>A upstream_gene_variant 0.15
ald 3086788 c.-32T>C upstream_gene_variant 0.18
ald 3086812 c.-8G>T upstream_gene_variant 0.25
ald 3087542 c.723G>A synonymous_variant 0.22
ald 3087577 p.Ser253* stop_gained 0.29
ald 3087698 c.879G>T synonymous_variant 0.2
fbiD 3339014 c.-104C>A upstream_gene_variant 0.17
fbiD 3339029 c.-89C>A upstream_gene_variant 0.18
fbiD 3339051 c.-67C>A upstream_gene_variant 0.22
fbiD 3339088 c.-30C>A upstream_gene_variant 0.2
fbiD 3339472 p.Ala119Ser missense_variant 0.17
fbiD 3339480 p.Gln121His missense_variant 0.2
fbiD 3339488 p.Glu124Gly missense_variant 0.25
fbiD 3339692 p.Pro192His missense_variant 0.18
fbiD 3339754 p.His213Asn missense_variant 0.22
Rv3083 3448458 c.-46C>A upstream_gene_variant 0.33
Rv3083 3449009 p.Trp169Leu missense_variant 0.18
fprA 3473854 c.-153G>T upstream_gene_variant 0.13
fprA 3474283 p.Leu93Ile missense_variant 0.15
fprA 3474427 p.Val141Ile missense_variant 0.18
fprA 3474466 p.Gly154Cys missense_variant 0.13
fprA 3475078 p.Gly358Trp missense_variant 0.13
fprA 3475143 c.1137C>A synonymous_variant 0.17
fprA 3475295 p.Glu430Val missense_variant 0.15
fprA 3475329 c.1323G>T synonymous_variant 0.2
whiB7 3568556 p.Leu42Met missense_variant 0.15
Rv3236c 3611959 c.1158G>T stop_lost&splice_region_variant 0.15
Rv3236c 3612169 p.Glu316Asp missense_variant 0.14
Rv3236c 3612727 c.390G>T synonymous_variant 0.18
Rv3236c 3612813 p.Thr102Ala missense_variant 0.2
Rv3236c 3613251 c.-135C>T upstream_gene_variant 0.13
fbiB 3640656 c.-879C>T upstream_gene_variant 0.25
fbiA 3641044 p.His168Asn missense_variant 0.25
fbiA 3641333 p.Gly264Val missense_variant 0.15
fbiB 3642138 p.Ala202Thr missense_variant 0.25
fbiB 3642806 c.1272C>A synonymous_variant 0.2
alr 3840248 c.1173C>T synonymous_variant 0.22
alr 3840350 c.1071G>A synonymous_variant 0.4
alr 3841128 p.Leu98Pro missense_variant 0.29
alr 3841310 p.Glu37Asp missense_variant 0.22
alr 3841517 c.-97G>T upstream_gene_variant 0.2
alr 3841545 c.-125G>T upstream_gene_variant 0.2
rpoA 3877833 c.675C>A synonymous_variant 0.17
rpoA 3878147 p.Pro121Thr missense_variant 0.22
rpoA 3878487 c.21C>A synonymous_variant 0.29
ddn 3986645 c.-199G>A upstream_gene_variant 0.25
ddn 3986648 c.-196C>G upstream_gene_variant 0.25
ddn 3986659 c.-185A>G upstream_gene_variant 0.29
ddn 3986661 c.-183C>A upstream_gene_variant 0.29
ddn 3986667 c.-177_-176delCTinsAC upstream_gene_variant 0.29
ddn 3986696 c.-148G>C upstream_gene_variant 0.22
clpC1 4038596 c.2109A>G synonymous_variant 0.15
clpC1 4038605 c.2100G>A synonymous_variant 0.19
clpC1 4038613 p.Asn698His missense_variant 0.19
clpC1 4038614 c.2091C>T synonymous_variant 0.19
clpC1 4038620 p.Gln695Leu missense_variant 0.2
clpC1 4038623 c.2082A>G synonymous_variant 0.2
clpC1 4038640 p.Asp689Asn missense_variant 0.28
clpC1 4038647 c.2058T>C synonymous_variant 0.25
clpC1 4038650 c.2055C>T synonymous_variant 0.25
clpC1 4038658 p.Lys683Gln missense_variant 0.24
clpC1 4038661 p.Ser682Thr missense_variant 0.23
clpC1 4038662 c.2043T>C synonymous_variant 0.24
clpC1 4038671 c.2034T>G synonymous_variant 0.26
clpC1 4038677 p.Pro676Ala missense_variant 0.29
clpC1 4038683 c.2022T>C synonymous_variant 0.31
clpC1 4038704 c.2001T>C synonymous_variant 0.25
clpC1 4038707 c.1998C>G synonymous_variant 0.25
clpC1 4038710 c.1995G>C synonymous_variant 0.25
clpC1 4038713 c.1992T>C synonymous_variant 0.25
clpC1 4038755 c.1950G>C synonymous_variant 0.17
clpC1 4038773 c.1932T>C synonymous_variant 0.15
clpC1 4038779 c.1926C>G synonymous_variant 0.15
clpC1 4038899 c.1806C>A synonymous_variant 0.25
clpC1 4039028 p.Lys559Asn missense_variant 0.22
clpC1 4039118 c.1587C>G synonymous_variant 0.15
clpC1 4039121 c.1584T>C synonymous_variant 0.15
clpC1 4039142 c.1563A>G synonymous_variant 0.15
clpC1 4039145 c.1560G>C synonymous_variant 0.15
clpC1 4039169 p.Glu512Asp missense_variant 0.22
clpC1 4039183 c.1522T>C synonymous_variant 0.22
clpC1 4039187 c.1518G>C synonymous_variant 0.18
clpC1 4039440 p.Arg422Leu missense_variant 0.18
clpC1 4039718 c.987C>G synonymous_variant 0.12
clpC1 4039724 c.981A>G synonymous_variant 0.15
clpC1 4039733 c.972G>C synonymous_variant 0.15
clpC1 4039751 c.954A>G synonymous_variant 0.17
clpC1 4039757 c.948A>G synonymous_variant 0.17
clpC1 4039760 c.945T>C synonymous_variant 0.16
clpC1 4039766 c.939T>C synonymous_variant 0.16
clpC1 4039769 c.936C>G synonymous_variant 0.17
clpC1 4039775 c.930G>C synonymous_variant 0.17
clpC1 4039778 c.927A>G synonymous_variant 0.17
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 0.16
clpC1 4039817 c.888A>T synonymous_variant 0.17
clpC1 4039820 c.885T>C synonymous_variant 0.18
clpC1 4039823 c.882T>A synonymous_variant 0.18
clpC1 4039831 c.874T>C synonymous_variant 0.2
clpC1 4039832 c.873C>G synonymous_variant 0.2
clpC1 4039850 c.855T>C synonymous_variant 0.13
clpC1 4039865 c.840T>C synonymous_variant 0.24
clpC1 4039898 c.807C>G synonymous_variant 0.17
clpC1 4039931 c.774T>C synonymous_variant 0.22
clpC1 4039934 c.771G>C synonymous_variant 0.25
clpC1 4039937 c.768G>C synonymous_variant 0.27
clpC1 4039946 c.759A>C synonymous_variant 0.22
clpC1 4039949 c.756G>C synonymous_variant 0.21
clpC1 4039952 c.753T>C synonymous_variant 0.2
clpC1 4039979 c.726C>G synonymous_variant 0.22
clpC1 4039991 c.714G>C synonymous_variant 0.24
clpC1 4040015 c.690G>C synonymous_variant 0.19
clpC1 4040021 c.684A>C synonymous_variant 0.2
clpC1 4040024 c.681A>G synonymous_variant 0.21
clpC1 4040030 c.675C>G synonymous_variant 0.2
clpC1 4040033 c.672G>C synonymous_variant 0.2
clpC1 4040042 c.663C>T synonymous_variant 0.16
clpC1 4040087 c.618G>C synonymous_variant 0.12
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.12
clpC1 4040144 c.561G>C synonymous_variant 0.27
clpC1 4040147 c.558A>G synonymous_variant 0.25
clpC1 4040153 c.552A>G synonymous_variant 0.23
clpC1 4040159 c.546G>C synonymous_variant 0.23
clpC1 4040162 c.543G>C synonymous_variant 0.23
clpC1 4040165 c.540G>C synonymous_variant 0.23
clpC1 4040168 c.537G>C synonymous_variant 0.25
clpC1 4040195 c.510G>C synonymous_variant 0.3
clpC1 4040200 c.505T>C synonymous_variant 0.3
clpC1 4040201 c.504C>A synonymous_variant 0.3
clpC1 4040204 c.501G>C synonymous_variant 0.3
clpC1 4040207 c.498T>G synonymous_variant 0.3
clpC1 4040213 p.Ser164Asn missense_variant 0.33
clpC1 4040228 c.477G>C synonymous_variant 0.33
clpC1 4040237 c.468C>T synonymous_variant 0.25
clpC1 4040246 c.459C>A synonymous_variant 0.25
clpC1 4040458 p.Arg83Ser missense_variant 0.13
clpC1 4040522 c.183T>C synonymous_variant 0.17
clpC1 4040531 c.174T>C synonymous_variant 0.21
clpC1 4040537 c.168G>C synonymous_variant 0.21
clpC1 4040540 c.165G>C synonymous_variant 0.21
clpC1 4040551 c.154T>C synonymous_variant 0.27
clpC1 4040558 c.147G>C synonymous_variant 0.29
clpC1 4040561 c.144A>G synonymous_variant 0.27
clpC1 4040573 c.132T>C synonymous_variant 0.29
clpC1 4040579 c.126A>G synonymous_variant 0.27
clpC1 4040582 c.123G>C synonymous_variant 0.27
clpC1 4040585 c.120A>G synonymous_variant 0.27
clpC1 4040588 c.117T>C synonymous_variant 0.25
clpC1 4040594 c.111G>C synonymous_variant 0.25
clpC1 4040600 c.103_105delTTAinsCTC synonymous_variant 0.22
clpC1 4040603 c.102T>G synonymous_variant 0.22
clpC1 4040606 c.99T>C synonymous_variant 0.21
clpC1 4040644 c.61A>C synonymous_variant 0.22
clpC1 4040648 c.57G>A synonymous_variant 0.24
panD 4044207 c.75G>T synonymous_variant 0.22
embC 4240386 p.Pro175His missense_variant 0.14
embC 4241017 c.1155T>C synonymous_variant 0.17
embC 4241023 c.1161T>G synonymous_variant 0.17
embC 4241024 p.Val388Phe missense_variant 0.17
embC 4241035 c.1173G>C synonymous_variant 0.16
embC 4241039 p.Asp393Asn missense_variant 0.16
embC 4241050 c.1188T>G synonymous_variant 0.17
embC 4241056 c.1194C>G synonymous_variant 0.18
embC 4241072 p.Leu404Val missense_variant 0.11
embC 4241107 c.1245G>C synonymous_variant 0.13
embC 4241109 p.Ala416Gly missense_variant 0.13
embC 4241116 c.1254C>G synonymous_variant 0.15
embC 4241634 p.Gly591Val missense_variant 0.17
embC 4241729 p.Ala623Thr missense_variant 0.2
embC 4242492 p.Arg877Leu missense_variant 0.15
embA 4242643 c.-590C>T upstream_gene_variant 0.17
embC 4242962 p.Gly1034Ser missense_variant 0.4
embA 4243182 c.-51G>T upstream_gene_variant 0.4
embA 4244055 p.Gly275Cys missense_variant 0.22
embA 4244073 p.Ala281Ser missense_variant 0.22
embA 4244397 p.Val389Leu missense_variant 0.25
embA 4245387 p.Ala719Ser missense_variant 0.18
embA 4245558 p.Gly776Arg missense_variant 0.22
embA 4245820 p.Ser863Thr missense_variant 0.14
embA 4245840 p.Val870Thr missense_variant 0.13
embB 4245845 c.-669T>C upstream_gene_variant 0.13
embA 4245846 p.Ser872Ala missense_variant 0.12
embB 4245854 c.-660C>G upstream_gene_variant 0.13
embA 4245868 p.Ser879Phe missense_variant 0.14
embA 4245873 p.Lys881Glu missense_variant 0.15
embA 4245892 p.Ile887Asn missense_variant 0.12
embB 4245905 c.-609C>G upstream_gene_variant 0.12
embB 4246788 p.Pro92Gln missense_variant 0.14
embB 4247299 c.786G>A synonymous_variant 0.2
embB 4247758 c.1245C>A synonymous_variant 0.22
embB 4248553 c.2040C>A synonymous_variant 0.25
embB 4248660 p.Ala716Glu missense_variant 0.12
embB 4249484 p.Gly991Cys missense_variant 0.22
embB 4249507 p.Gln998His missense_variant 0.22
aftB 4267070 c.1767C>A synonymous_variant 0.15
aftB 4267215 p.Gly541Val missense_variant 0.22
aftB 4267628 c.1209C>A synonymous_variant 0.15
aftB 4268314 c.523T>C synonymous_variant 0.12
aftB 4268683 p.Gly52Cys missense_variant 0.12
ubiA 4269019 p.Gly272Val missense_variant 0.2
ubiA 4269974 c.-141C>A upstream_gene_variant 0.18
ubiA 4269982 c.-149T>C upstream_gene_variant 0.18
ethA 4326064 c.1410C>A synonymous_variant 0.17
ethA 4326175 p.Glu433Asp missense_variant 0.29
ethA 4326422 p.Gly351Val missense_variant 0.18
ethA 4326750 p.Asn242Asp missense_variant 0.2
ethA 4327013 p.Ser154* stop_gained 0.17
ethA 4327031 p.Ser148* stop_gained 0.18
ethR 4327865 p.Gly106Val missense_variant 0.2
gid 4407780 c.423G>A synonymous_variant 0.33
gid 4408356 c.-154G>T upstream_gene_variant 0.15