EBG00000313325 - n.87delA
Drug resistance types
64 Sensitive
5 RR-TB
77 HR-TB
12 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
84 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 148 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.2.1 | 13 |
| lineage4.3.4.2.1 | 4 |
| lineage4.1.1.3 | 4 |
| La1.7;lineage4.9 | 4 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| La3;lineage4.9 | 8 |
| La1;lineage4.1.2 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage3 | 5 |
| lineage1.1.3.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.3 | 4 |
| lineage2.2.1.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| La1.3 | 3 |
| lineage4.5 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.2.1 | 4 |
| lineage1.1.2 | 3 |
| M.canetti;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage5.1.4 | 1 |
| 2 | |
| lineage4.1.1.1 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4 | 2 |
| lineage4.1.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage4.2.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| La1;lineage4.9 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.2;lineage4.5 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 247 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14801749 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR1180996 | Other | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR349264 | Other | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR4815471 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR6044875 | Other | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR12708392 | Other | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR1173777 | Sensitive | lineage4.9 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR2100532 | Sensitive | lineage3 | None | SRR6045503 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR6045795 | Other | lineage2.2.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR369162 | Other | lineage4.9 | None | SRR1173568 | Sensitive | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR373945 | Other | lineage4.9 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR7535082 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR228175 | Sensitive | lineage3 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4769552 | Sensitive | La1.3 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675387 | Other | lineage4.9 | None | ERR3283014 | Other | La3;lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR363490 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR363479 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR349300 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363449 | Other | lineage4.9 | None | ERR4817998 | Other | lineage3 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR363499 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR9786076 | Other | lineage3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | SRR8692790 | Other | lineage4 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR6045832 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR10808490 | Sensitive | lineage2.2.1.1 | None | ERR736831 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4769555 | Sensitive | La1.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | SRR5341319 | Other | lineage3 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4831763 | HR-TB | lineage2.2;lineage4.5 | None | ERR369159 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR6045359 | HR-TB | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR363421 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR3283031 | Other | La3;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR176580 | Sensitive | lineage4.3.4.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None |
|---|
