Rv3596c - c.1164C>G
Drug resistance types
52 Sensitive
2 RR-TB
64 HR-TB
10 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1;lineage4.9 | 2 |
| lineage4.6.1.2 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage4.3.3 | 3 |
| lineage3;lineage4.9 | 1 |
| lineage4.9 | 108 |
| 3 | |
| La1.8.1 | 3 |
| lineage2.2.1 | 17 |
| lineage4.1.1.3 | 2 |
| lineage1.1.2 | 1 |
| lineage4 | 7 |
| lineage4.8 | 2 |
| lineage4.1.2.1 | 5 |
| lineage4.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage4.5 | 2 |
| La3;lineage4.3.4 | 1 |
| lineage2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.6.2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 3 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.2.1 | 5 |
| La1.7.1 | 1 |
| lineage4.4.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 194 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR7236177 | Other | La1.8.1 | None | ERR323066 | HR-TB | lineage4.9 | None | SRR10808668 | Other | lineage2.2.1 | None | ERR502511 | HR-TB | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | ERR4797474 | Other | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR4816964 | HR-TB | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR16156804 | Sensitive | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR4816151 | Other | lineage4.8 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | ERR4816548 | HR-TB | lineage4.5 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR349264 | Other | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR2517475 | Other | lineage4 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1158918 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR10315558 | RR-TB | lineage2.2.1 | None | ERR369162 | Other | lineage4.9 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR3275450 | Other | lineage4 | None | ERR369151 | Other | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR400326 | Other | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR363498 | Other | lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR4796254 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | SRR1238558 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR349266 | Other | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | ERR1063896 | HR-TB | None | ERR4796577 | HR-TB | None | ERR323062 | HR-TB | lineage4.9 | None | ERR4798823 | HR-TB | lineage4 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR1181403 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR5341298 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6046141 | Other | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341300 | HR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR6046897 | Sensitive | lineage4.9 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR4811031 | Other | lineage4.5 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR4815471 | HR-TB | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR10808399 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Other | lineage4.9 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SRR5341455 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None |
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