lineage | Count |
---|---|
75 | |
La1.8.1 | 4 |
lineage4.9 | 80 |
lineage4 | 74 |
lineage4.1.2.1 | 18 |
lineage5.1.2 | 1 |
La1.3 | 3 |
lineage3 | 13 |
La1.2 | 1 |
lineage4.9;La1.3 | 1 |
lineage4.8 | 6 |
lineage1.1.2 | 1 |
lineage2.2.1 | 16 |
lineage4.5 | 3 |
lineage2.2 | 7 |
lineage2.2.1.2 | 3 |
lineage4.3.3 | 5 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.3.2 | 1 |
lineage3.1.1 | 2 |
lineage4.1.1.3 | 4 |
lineage4.7 | 1 |
lineage6 | 1 |
La1.6 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.4.1.1 | 3 |
lineage1.2.1.2 | 1 |
lineage4.2.1 | 3 |
lineage4.4.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage3.1.3 | 1 |
lineage4.1 | 4 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.1.1 | 2 |
lineage4;lineage1.1.2 | 1 |
lineage5.1.4 | 1 |
lineage4.3.2.1 | 2 |
lineage2.2.1.1 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.4.2;lineage2.2.1 | 1 |
lineage3.1.2 | 1 |
lineage4.8.1 | 1 |
lineage4.4.1.2 | 1 |
La1 | 1 |
spoligotype | Count |
---|---|
None | 358 |
ID | Drug resistance | Lineage | Country iso2 | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR400336 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4769516 | Other | La1.3 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4188350 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR473332 | Other | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769514 | Other | La1.3 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769552 | Other | La1.3 | None | ERR4797313 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798431 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799989 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4811030 | Sensitive | None | ERR9786076 | Sensitive | lineage3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9634265 | Sensitive | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358991 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR736837 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7801194 | HR-TB | lineage4.3.3 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR9787030 | Sensitive | lineage6 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR12882669 | RR-TB | lineage3.1.1 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861553 | Sensitive | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR14782006 | Sensitive | lineage4.8 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR3675477 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR26159063 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR5485431 | Sensitive | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3675501 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | ERR4815471 | Other | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | ERR3275450 | Other | lineage4 | None | ERR1750921 | Sensitive | lineage4.1.1.3 | None | SRR3675234 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675279 | Other | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675383 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR4816964 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675522 | Other | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | ERR212123 | Other | None | ERR212001 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816470 | Other | lineage3 | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3732702 | Sensitive | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.1 | None | ERR4817998 | Other | lineage3 | None | ERR3276178 | Sensitive | lineage4.1.2.1 | nl | ERR4819051 | Other | lineage4 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR2513259 | Other | lineage3 | None | SRR5341396 | Other | lineage4 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR3275220 | Other | lineage3 | nl | ERR4818536 | Other | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR1035138 | MDR-TB | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819933 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5485567 | MDR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2517475 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693227 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR4821276 | Other | lineage3 | None | SRR6045503 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR2446144 | Other | lineage3 | nl | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | ERR2693232 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | ERR2517528 | Other | lineage3 | nl | ERR2516173 | Sensitive | lineage4.1.2.1 | be | ERR4830353 | Other | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6046802 | Other | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831638 | Sensitive | None | ERR4831117 | HR-TB | None | ERR4831841 | HR-TB | lineage4.4.2;lineage2.2.1 | None | ERR4831746 | MDR-TB | lineage2.2.1 | None | ERR4831724 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR5311099 | HR-TB | None | SRR6982246 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6797752 | Sensitive | lineage3.1.2 | None | ERR323036 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR323038 | HR-TB | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323063 | HR-TB | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR3283055 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283028 | Other | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR10796569 | Other | lineage4.9 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None |
---|