Rv1630 - c.957C>T
Drug resistance types
94 Sensitive
12 RR-TB
112 HR-TB
23 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
92 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 48 |
| lineage2.2.1 | 27 |
| lineage1.2.1.2 | 1 |
| lineage4.5 | 2 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1.8.1 | 4 |
| 84 | |
| lineage2.2.2 | 3 |
| lineage4 | 80 |
| lineage4.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 3 |
| lineage4.4.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3 | 1 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage4.1.1 | 2 |
| lineage4.8 | 3 |
| lineage4;lineage1.1.2 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.1.2.1 | 19 |
| lineage3 | 7 |
| lineage3.1.3 | 1 |
| lineage4.3.2 | 2 |
| lineage1.1.2 | 4 |
| lineage4.6.2.2 | 5 |
| lineage4.9;lineage2.1 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.1 | 1 |
| lineage4.3.3 | 5 |
| lineage2.2 | 3 |
| lineage2.2.1.1 | 3 |
| lineage3.1 | 2 |
| lineage4.1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage5.1.2 | 1 |
| La1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6.1.3 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1 | 2 |
| La3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 344 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184308 | Sensitive | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861326 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR1640750 | HR-TB | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR20632814 | Sensitive | lineage4 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675486 | HR-TB | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR1750938 | Other | lineage4.4.1 | None | ERR1750907 | RR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR176643 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR176751 | HR-TB | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3675558 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675545 | HR-TB | None | ERR2229147 | Other | lineage4.8 | None | ERR4816322 | Other | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR2513259 | Other | lineage3 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818407 | Other | lineage4.3.2 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819305 | RR-TB | lineage4.9 | None | SRR5341453 | Sensitive | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341425 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341455 | Sensitive | lineage4 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341308 | Sensitive | lineage4 | None | ERR2514929 | HR-TB | lineage1.1.2 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515228 | Other | lineage2.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | ERR1023509 | Other | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341310 | Other | lineage1.1.2 | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341469 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045503 | HR-TB | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR4821288 | Other | lineage4.7 | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6325444 | HR-TB | None | SRR6046376 | Other | lineage3 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR2851359 | Other | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046492 | Other | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4972477 | MDR-TB | lineage4.3.3 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR323038 | HR-TB | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR294248 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1034634 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023525 | HR-TB | lineage4 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR323045 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR108471 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR1063858 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468704 | Other | La1.8.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4024991 | Other | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR473332 | Other | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797264 | Sensitive | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6865502 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866639 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786528 | Sensitive | lineage4.6.2.2 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR9786597 | Sensitive | lineage4.6.2.2 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9896144 | Other | lineage3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR11349186 | MDR-TB | lineage4.3.3 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173740 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None |
|---|
