TB-Profiler result

Run: SRR13861500
Summary

Run ID: SRR13861500

Sample name:

Date: 03-04-2023 09:33:26

Number of reads: 407735

Percentage reads mapped: 8.16

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761131 p.Gly442Glu missense_variant 0.39 rifampicin
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 0.15 streptomycin
embB 4247448 p.His312Arg missense_variant 0.2 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6649 c.-653T>C upstream_gene_variant 0.14
gyrA 6655 c.-647T>C upstream_gene_variant 0.15
gyrA 6670 c.-632G>C upstream_gene_variant 0.2
gyrA 6673 c.-629A>C upstream_gene_variant 0.18
gyrA 6700 c.-602T>C upstream_gene_variant 0.29
gyrA 6703 c.-599G>C upstream_gene_variant 0.29
gyrA 6706 c.-596G>A upstream_gene_variant 0.29
gyrA 6709 c.-593A>G upstream_gene_variant 0.29
gyrA 6712 c.-590G>C upstream_gene_variant 0.29
gyrA 6727 c.-575G>T upstream_gene_variant 0.19
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.19
gyrA 6745 c.-557T>G upstream_gene_variant 0.19
gyrA 6760 c.-542G>C upstream_gene_variant 0.25
gyrA 6778 c.-524C>T upstream_gene_variant 0.24
gyrA 6793 c.-509T>C upstream_gene_variant 0.24
gyrB 6797 p.Gly520Thr missense_variant 0.2
gyrA 6824 c.-478C>T upstream_gene_variant 0.21
gyrA 6844 c.-458T>G upstream_gene_variant 0.14
gyrA 6853 c.-449A>G upstream_gene_variant 0.15
gyrA 6862 c.-440C>G upstream_gene_variant 0.14
gyrA 6878 c.-424T>C upstream_gene_variant 0.17
gyrA 6904 c.-398C>G upstream_gene_variant 0.21
gyrA 6934 c.-368A>G upstream_gene_variant 0.18
gyrA 6937 c.-365G>A upstream_gene_variant 0.17
gyrA 7066 c.-236G>C upstream_gene_variant 0.15
gyrA 7078 c.-224A>G upstream_gene_variant 0.15
gyrA 7081 c.-221T>C upstream_gene_variant 0.15
gyrA 7084 c.-218A>G upstream_gene_variant 0.15
gyrA 7093 c.-209T>C upstream_gene_variant 0.18
gyrA 7099 c.-203G>A upstream_gene_variant 0.17
gyrA 7108 c.-194G>A upstream_gene_variant 0.18
gyrA 7114 c.-188C>A upstream_gene_variant 0.17
gyrB 7124 p.Ser629Thr missense_variant 0.14
gyrA 7129 c.-173T>G upstream_gene_variant 0.15
gyrA 7132 c.-170T>G upstream_gene_variant 0.15
gyrA 7141 c.-161T>C upstream_gene_variant 0.15
gyrA 7147 c.-155G>C upstream_gene_variant 0.14
gyrA 7165 c.-137C>G upstream_gene_variant 0.17
gyrA 7760 c.459C>T synonymous_variant 0.12
gyrA 7763 c.462T>C synonymous_variant 0.12
gyrA 8156 c.855T>C synonymous_variant 0.21
gyrA 8168 c.867A>G synonymous_variant 0.23
gyrA 8174 c.873C>G synonymous_variant 0.29
gyrA 8177 c.876A>C synonymous_variant 0.29
gyrA 8198 c.897T>C synonymous_variant 0.29
gyrA 8204 c.903C>T synonymous_variant 0.33
gyrA 8207 c.906T>C synonymous_variant 0.33
gyrA 8216 c.915G>A synonymous_variant 0.33
gyrA 8219 c.918T>C synonymous_variant 0.33
gyrA 8225 c.924T>C synonymous_variant 0.29
gyrA 8234 c.933T>G synonymous_variant 0.27
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.27
gyrA 8253 p.Ile318Leu missense_variant 0.27
gyrA 8264 c.963T>C synonymous_variant 0.27
gyrA 8267 c.966G>C synonymous_variant 0.25
gyrA 8270 c.969G>C synonymous_variant 0.24
gyrA 8283 p.Ile328Leu missense_variant 0.27
gyrA 8288 c.987T>C synonymous_variant 0.24
gyrA 8294 c.993T>C synonymous_variant 0.2
gyrA 8324 c.1023T>C synonymous_variant 0.21
gyrA 8339 c.1038A>G synonymous_variant 0.27
gyrA 8342 c.1041G>C synonymous_variant 0.25
gyrA 8366 c.1065G>C synonymous_variant 0.25
gyrA 8375 c.1074G>C synonymous_variant 0.27
gyrA 8391 p.Tyr364His missense_variant 0.29
gyrA 8399 c.1098T>C synonymous_variant 0.31
gyrA 8420 c.1119T>C synonymous_variant 0.27
gyrA 8423 c.1122G>C synonymous_variant 0.29
gyrA 8442 c.1141C>T synonymous_variant 0.29
gyrA 8453 c.1152A>C synonymous_variant 0.38
gyrA 8462 c.1161A>G synonymous_variant 0.29
gyrA 8471 c.1170T>C synonymous_variant 0.27
gyrA 8480 c.1179C>T synonymous_variant 0.27
gyrA 8486 c.1185T>C synonymous_variant 0.27
gyrA 8489 c.1188A>G synonymous_variant 0.25
gyrA 8498 c.1197C>T synonymous_variant 0.27
gyrA 8504 c.1203G>C synonymous_variant 0.27
gyrA 8516 c.1215T>C synonymous_variant 0.27
gyrA 8519 c.1218A>C synonymous_variant 0.27
gyrA 8537 c.1236G>A synonymous_variant 0.25
gyrA 8546 c.1245T>C synonymous_variant 0.25
gyrA 8552 c.1251C>G synonymous_variant 0.23
gyrA 8556 p.Ala419Gln missense_variant 0.21
gyrA 8561 c.1260A>C synonymous_variant 0.25
gyrA 8562 c.1261C>T synonymous_variant 0.25
gyrA 8597 c.1296C>G synonymous_variant 0.25
gyrA 8603 c.1302A>G synonymous_variant 0.23
gyrA 8619 c.1318T>C synonymous_variant 0.25
gyrA 8624 c.1323G>C synonymous_variant 0.25
gyrA 8627 c.1326C>G synonymous_variant 0.18
gyrA 8636 c.1335A>G synonymous_variant 0.17
gyrA 8642 c.1341A>G synonymous_variant 0.18
gyrA 8645 c.1344C>G synonymous_variant 0.2
gyrA 8897 c.1596T>C synonymous_variant 0.22
gyrA 8903 c.1602T>C synonymous_variant 0.25
gyrA 8915 c.1614A>G synonymous_variant 0.22
gyrA 8939 c.1638T>C synonymous_variant 0.22
gyrA 8942 c.1641G>C synonymous_variant 0.22
gyrA 8945 c.1644G>C synonymous_variant 0.22
gyrA 8946 c.1645_1647delTTGinsCTC synonymous_variant 0.22
gyrA 8951 p.Lys550Asn missense_variant 0.22
gyrA 8966 c.1665C>G synonymous_variant 0.22
gyrA 8967 p.Ala556Arg missense_variant 0.22
gyrA 8987 c.1686C>G synonymous_variant 0.2
gyrA 8990 c.1689C>G synonymous_variant 0.3
gyrA 8996 c.1695T>C synonymous_variant 0.3
gyrA 8998 p.Leu566Trp missense_variant 0.3
gyrA 9023 c.1722A>C synonymous_variant 0.43
gyrA 9029 c.1728T>C synonymous_variant 0.29
gyrA 9032 c.1731T>C synonymous_variant 0.29
gyrA 9502 p.Arg734His missense_variant 1.0
gyrA 9597 c.2296T>C synonymous_variant 0.15
gyrA 9665 c.2364A>G synonymous_variant 0.2
rpoB 759681 c.-126C>T upstream_gene_variant 1.0
rpoB 760091 c.285G>C synonymous_variant 0.13
rpoB 760106 c.300G>T synonymous_variant 0.14
rpoB 760112 c.306T>C synonymous_variant 0.15
rpoB 760118 c.312T>C synonymous_variant 0.17
rpoB 760121 c.315T>C synonymous_variant 0.17
rpoB 760130 p.Asp108Glu missense_variant 0.17
rpoB 760139 c.333A>G synonymous_variant 0.15
rpoB 760142 c.336C>G synonymous_variant 0.21
rpoB 760181 c.375T>C synonymous_variant 0.17
rpoB 760223 c.417T>C synonymous_variant 0.2
rpoB 760925 c.1119T>C synonymous_variant 0.17
rpoB 760928 c.1122G>C synonymous_variant 0.17
rpoB 760934 c.1128C>T synonymous_variant 0.17
rpoB 760946 c.1140A>G synonymous_variant 0.18
rpoB 760982 c.1176G>C synonymous_variant 0.18
rpoB 760985 c.1179G>C synonymous_variant 0.18
rpoB 760991 c.1185G>C synonymous_variant 0.17
rpoB 761015 c.1209G>C synonymous_variant 0.22
rpoB 761021 c.1215G>C synonymous_variant 0.2
rpoB 761027 c.1221A>G synonymous_variant 0.2
rpoB 761036 c.1230G>C synonymous_variant 0.2
rpoB 761037 c.1231T>C synonymous_variant 0.2
rpoB 761051 c.1245G>T synonymous_variant 0.2
rpoB 761054 c.1248G>C synonymous_variant 0.18
rpoB 761057 c.1251G>C synonymous_variant 0.18
rpoB 761060 c.1254C>G synonymous_variant 0.18
rpoB 761063 c.1257C>G synonymous_variant 0.18
rpoB 761126 c.1320G>T synonymous_variant 0.39
rpoB 761129 c.1323G>C synonymous_variant 0.39
rpoB 761133 p.Leu443Ile missense_variant 0.41
rpoB 761150 c.1344A>C synonymous_variant 0.47
rpoB 761151 p.Leu449Val missense_variant 0.37
rpoB 761156 c.1350G>C synonymous_variant 0.37
rpoB 761162 c.1356G>C synonymous_variant 0.4
rpoB 761165 c.1359G>C synonymous_variant 0.5
rpoB 761168 c.1362C>G synonymous_variant 0.56
rpoB 761171 c.1365C>T synonymous_variant 0.16
rpoB 761178 p.Ser458Thr missense_variant 0.42
rpoB 761189 c.1383T>G synonymous_variant 0.16
rpoB 761192 c.1386C>G synonymous_variant 0.4
rpoB 761195 c.1389G>C synonymous_variant 0.4
rpoB 761196 p.Leu464Phe missense_variant 0.4
rpoB 761204 c.1398C>T synonymous_variant 0.4
rpoB 761207 c.1401C>T synonymous_variant 0.4
rpoB 761213 c.1407G>A synonymous_variant 0.4
rpoB 761220 p.Ser472Thr missense_variant 0.38
rpoB 761234 c.1428G>C synonymous_variant 0.42
rpoB 761235 p.Met477Val missense_variant 0.42
rpoB 761239 p.Cys478Tyr missense_variant 0.45
rpoB 761255 c.1449T>G synonymous_variant 0.16
rpoB 761258 c.1452G>A synonymous_variant 0.12
rpoB 761261 c.1455G>T synonymous_variant 0.27
rpoB 761327 c.1521A>G synonymous_variant 0.15
rpoB 761360 c.1554T>C synonymous_variant 0.15
rpoB 761373 p.Val523Gln missense_variant 0.17
rpoB 761414 c.1608A>G synonymous_variant 0.17
rpoB 761885 c.2079T>C synonymous_variant 0.2
rpoB 761891 c.2085G>C synonymous_variant 0.2
rpoB 761906 c.2100C>G synonymous_variant 0.2
rpoB 761909 c.2103T>C synonymous_variant 0.2
rpoB 761912 c.2106T>C synonymous_variant 0.2
rpoB 761915 p.Asp703Glu missense_variant 0.2
rpoB 761916 p.Asp704Asn missense_variant 0.2
rpoB 761948 c.2142G>C synonymous_variant 0.2
rpoB 761954 c.2148C>G synonymous_variant 0.22
rpoB 761999 c.2193G>C synonymous_variant 0.25
rpoB 762008 c.2202C>G synonymous_variant 0.22
rpoB 762014 c.2208C>T synonymous_variant 0.25
rpoB 762017 c.2211A>G synonymous_variant 0.25
rpoB 762176 c.2370T>C synonymous_variant 0.2
rpoB 762185 c.2379G>C synonymous_variant 0.25
rpoB 762218 c.2412T>G synonymous_variant 0.24
rpoB 762254 c.2448T>C synonymous_variant 0.3
rpoB 762266 c.2460T>C synonymous_variant 0.3
rpoB 762284 c.2478G>C synonymous_variant 0.25
rpoB 762293 c.2487T>C synonymous_variant 0.25
rpoB 762317 c.2511A>G synonymous_variant 0.23
rpoB 762329 c.2523G>C synonymous_variant 0.19
rpoB 762338 c.2532T>C synonymous_variant 0.19
rpoB 762362 p.Glu852Asp missense_variant 0.17
rpoC 762860 c.-510G>C upstream_gene_variant 0.18
rpoC 762863 c.-507T>C upstream_gene_variant 0.18
rpoB 762878 p.Ile1024Met missense_variant 0.21
rpoB 762879 p.Met1025Leu missense_variant 0.21
rpoB 762888 p.His1028Asn missense_variant 0.23
rpoB 762911 p.Ile1035Met missense_variant 0.24
rpoC 762920 c.-450C>T upstream_gene_variant 0.24
rpoC 762929 c.-441G>C upstream_gene_variant 0.39
rpoB 762930 p.Pro1042Ser missense_variant 0.22
rpoC 762936 c.-434_-432delTCGinsAGC upstream_gene_variant 0.22
rpoB 762939 p.Met1045Leu missense_variant 0.22
rpoB 762942 p.Ile1046Val missense_variant 0.21
rpoC 762962 c.-408C>T upstream_gene_variant 0.15
rpoC 762971 c.-399G>A upstream_gene_variant 0.18
rpoC 762983 c.-387C>T upstream_gene_variant 0.17
rpoC 762989 c.-381G>C upstream_gene_variant 0.27
rpoC 762995 c.-375G>T upstream_gene_variant 0.3
rpoC 763028 c.-342T>C upstream_gene_variant 0.18
rpoC 763031 c.-339T>G upstream_gene_variant 0.18
rpoC 763034 c.-336C>G upstream_gene_variant 0.18
rpoC 763040 c.-330C>G upstream_gene_variant 0.19
rpoC 763070 c.-300T>C upstream_gene_variant 0.21
rpoC 763076 c.-294C>G upstream_gene_variant 0.21
rpoC 763085 c.-285C>G upstream_gene_variant 0.17
rpoC 763115 c.-255T>C upstream_gene_variant 0.14
rpoC 763136 c.-234C>T upstream_gene_variant 0.15
rpoC 763158 c.-212C>T upstream_gene_variant 0.17
rpoC 763166 c.-204A>G upstream_gene_variant 0.18
rpoC 763169 c.-201A>G upstream_gene_variant 0.18
rpoC 763696 c.327T>C synonymous_variant 0.15
rpoC 763709 c.340C>T synonymous_variant 0.15
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 763765 c.396T>C synonymous_variant 0.15
rpoC 763780 c.411C>G synonymous_variant 0.15
rpoC 763801 c.432C>G synonymous_variant 0.25
rpoC 763807 c.438T>C synonymous_variant 0.25
rpoC 763819 c.450G>C synonymous_variant 0.25
rpoC 763831 c.462A>G synonymous_variant 0.18
rpoC 763835 p.Ala156Met missense_variant 0.18
rpoC 763858 c.489A>G synonymous_variant 0.18
rpoC 763872 p.Gly168Ala missense_variant 0.15
rpoC 763933 c.564C>T synonymous_variant 0.19
rpoC 763945 c.576T>C synonymous_variant 0.18
rpoC 764257 c.888G>C synonymous_variant 0.21
rpoC 764266 c.897T>C synonymous_variant 0.2
rpoC 764269 c.900G>C synonymous_variant 0.2
rpoC 764278 c.909A>G synonymous_variant 0.19
rpoC 764282 c.913_915delTCGinsAGC synonymous_variant 0.19
rpoC 764320 c.951C>G synonymous_variant 0.19
rpoC 764387 c.1018T>C synonymous_variant 0.29
rpoC 764401 c.1032C>T synonymous_variant 0.27
rpoC 764404 c.1035C>T synonymous_variant 0.27
rpoC 764405 c.1036A>C synonymous_variant 0.36
rpoC 764419 c.1050C>T synonymous_variant 0.27
rpoC 764428 c.1059G>T synonymous_variant 0.27
rpoC 764431 c.1062G>C synonymous_variant 0.14
rpoC 764434 c.1065A>G synonymous_variant 0.41
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.29
rpoC 764441 p.Ile358Leu missense_variant 0.27
rpoC 764446 c.1077T>C synonymous_variant 0.41
rpoC 764449 c.1080G>C synonymous_variant 0.14
rpoC 764451 p.Gly361Ala missense_variant 0.3
rpoC 764455 c.1086G>T synonymous_variant 0.35
rpoC 764461 p.Glu364Asp missense_variant 0.35
rpoC 764470 c.1101C>G synonymous_variant 0.33
rpoC 764471 p.Asn368Arg missense_variant 0.32
rpoC 764479 c.1110G>A synonymous_variant 0.33
rpoC 764485 c.1116G>C synonymous_variant 0.35
rpoC 764498 p.Ser377Ala missense_variant 0.35
rpoC 764503 c.1134G>C synonymous_variant 0.38
rpoC 764509 c.1140G>C synonymous_variant 0.43
rpoC 764513 p.Phe382Leu missense_variant 0.43
rpoC 764521 c.1152T>C synonymous_variant 0.46
rpoC 764527 c.1158C>T synonymous_variant 0.18
rpoC 764858 c.1489T>C synonymous_variant 0.2
rpoC 764872 c.1503A>G synonymous_variant 0.21
rpoC 764893 c.1524T>C synonymous_variant 0.2
rpoC 764911 c.1542A>G synonymous_variant 0.23
rpoC 764923 c.1554A>G synonymous_variant 0.2
rpoC 764932 c.1563C>A synonymous_variant 0.14
rpoC 764995 c.1626C>G synonymous_variant 0.25
rpoC 765421 c.2052C>G synonymous_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.18
rpoC 765739 c.2370G>C synonymous_variant 0.18
rpoC 765751 c.2382C>G synonymous_variant 0.16
rpoC 765753 p.Asp795Ala missense_variant 0.17
rpoC 765772 c.2403C>G synonymous_variant 0.18
rpoC 765784 c.2415C>G synonymous_variant 0.18
rpoC 765796 c.2427C>T synonymous_variant 0.18
rpoC 765811 c.2442T>C synonymous_variant 0.15
rpoC 765814 c.2445A>G synonymous_variant 0.17
rpoC 765835 c.2466C>T synonymous_variant 0.17
rpoC 765883 c.2514C>G synonymous_variant 0.27
rpoC 765886 c.2517C>G synonymous_variant 0.21
rpoC 765892 c.2523T>C synonymous_variant 0.29
rpoC 765928 c.2559C>G synonymous_variant 0.27
rpoC 765967 c.2598C>T synonymous_variant 0.29
rpoC 765970 c.2601C>T synonymous_variant 0.33
rpoC 765979 c.2610C>G synonymous_variant 0.3
rpoC 765982 c.2613C>T synonymous_variant 0.25
rpoC 765985 c.2616C>T synonymous_variant 0.25
rpoC 765994 c.2625A>T synonymous_variant 0.27
rpoC 766021 c.2652G>C synonymous_variant 0.2
rpoC 766043 p.Gln892Glu missense_variant 0.18
rpoC 766054 c.2685C>G synonymous_variant 0.18
rpoC 766069 c.2700G>A synonymous_variant 0.15
rpoC 766082 p.Ala905Gln missense_variant 0.15
rpoC 766096 c.2727G>C synonymous_variant 0.15
rpoC 766105 c.2736C>T synonymous_variant 0.15
rpoC 766129 c.2760C>G synonymous_variant 0.14
rpoC 766135 c.2766G>A synonymous_variant 0.17
rpoC 766141 c.2772C>T synonymous_variant 0.17
rpoC 766142 c.2773C>T synonymous_variant 0.17
rpoC 767033 p.Ser1222Thr missense_variant 0.13
mmpL5 776185 p.Lys766Glu missense_variant 1.0
mmpL5 779400 c.-920C>A upstream_gene_variant 1.0
rpsL 781631 c.72G>C synonymous_variant 0.27
rpsL 781649 c.90T>C synonymous_variant 0.31
rpsL 781655 c.96T>C synonymous_variant 0.36
rpsL 781682 c.123T>C synonymous_variant 0.33
rpsL 781715 c.156T>C synonymous_variant 0.31
rpsL 781728 c.169T>C synonymous_variant 0.31
rpsL 781736 c.177T>C synonymous_variant 0.36
rpsL 781751 c.192G>C synonymous_variant 0.43
rpsL 781754 c.195G>C synonymous_variant 0.46
rpsL 781760 c.201T>C synonymous_variant 0.36
rpsL 781793 c.234G>C synonymous_variant 0.22
rplC 801171 c.363A>G synonymous_variant 0.22
rplC 801174 c.366T>C synonymous_variant 0.25
rplC 801222 c.414T>C synonymous_variant 0.25
rplC 801228 c.420T>C synonymous_variant 0.25
rplC 801246 c.438C>G synonymous_variant 0.22
rplC 801249 c.441T>G synonymous_variant 0.22
rplC 801255 c.447C>T synonymous_variant 0.2
rplC 801267 c.459A>C synonymous_variant 0.18
rplC 801270 c.462T>C synonymous_variant 0.18
rplC 801276 c.468G>C synonymous_variant 0.22
rplC 801301 c.493C>A synonymous_variant 0.22
rplC 801312 c.504G>C synonymous_variant 0.22
rplC 801324 c.516T>C synonymous_variant 0.2
rplC 801336 c.528C>G synonymous_variant 0.17
rplC 801339 c.531T>C synonymous_variant 0.17
rplC 801341 p.Leu178Gln missense_variant 0.17
rplC 801357 c.549T>C synonymous_variant 0.2
rplC 801367 p.Ala187Thr missense_variant 0.2
rplC 801396 c.588T>C synonymous_variant 0.18
rplC 801402 c.594T>C synonymous_variant 0.18
rplC 801405 c.597T>C synonymous_variant 0.18
rplC 801417 c.609T>C synonymous_variant 0.2
fbiC 1303638 c.708A>G synonymous_variant 0.19
fbiC 1304670 c.1740G>T synonymous_variant 0.15
fbiC 1304671 p.Val581Thr missense_variant 0.15
fbiC 1304675 p.Gly582Glu missense_variant 0.15
fbiC 1304691 c.1761G>C synonymous_variant 0.25
fbiC 1304694 c.1764A>C synonymous_variant 0.23
fbiC 1304703 c.1773C>G synonymous_variant 0.27
fbiC 1304715 c.1785G>C synonymous_variant 0.27
fbiC 1304724 c.1794A>G synonymous_variant 0.23
fbiC 1304727 c.1797A>G synonymous_variant 0.23
fbiC 1304742 c.1812T>C synonymous_variant 0.21
fbiC 1304748 c.1818T>C synonymous_variant 0.2
fbiC 1304754 c.1824G>A synonymous_variant 0.15
fbiC 1304757 c.1827A>G synonymous_variant 0.15
fbiC 1304784 c.1854T>C synonymous_variant 0.27
fbiC 1304787 c.1857T>C synonymous_variant 0.27
fbiC 1304790 c.1860C>G synonymous_variant 0.27
fbiC 1304808 c.1878C>G synonymous_variant 0.25
fbiC 1304811 c.1881C>G synonymous_variant 0.24
fbiC 1304817 c.1887T>C synonymous_variant 0.24
fbiC 1304829 c.1899T>C synonymous_variant 0.28
fbiC 1304832 c.1902C>G synonymous_variant 0.29
fbiC 1304853 c.1923C>G synonymous_variant 0.25
fbiC 1304856 c.1926C>G synonymous_variant 0.24
fbiC 1304872 c.1942_1944delAGCinsTCG synonymous_variant 0.21
fbiC 1304877 c.1947T>C synonymous_variant 0.21
fbiC 1304878 c.1948_1950delCGCinsAGG synonymous_variant 0.21
fbiC 1304893 p.Gly655Ser missense_variant 0.21
fbiC 1304916 c.1986T>C synonymous_variant 0.15
fbiC 1305311 p.Arg794Gln missense_variant 0.12
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.23
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.23
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.21
rrs 1472031 n.186G>A non_coding_transcript_exon_variant 0.19
rrs 1472044 n.199G>C non_coding_transcript_exon_variant 0.16
rrs 1472075 n.230A>G non_coding_transcript_exon_variant 0.16
rrs 1472865 n.1020C>G non_coding_transcript_exon_variant 0.78
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.33
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.32
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.32
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.32
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.32
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.32
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.24
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.25
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.35
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.26
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.26
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.37
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.35
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.35
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.35
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.35
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.37
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.37
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.37
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.37
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.39
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.27
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.27
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.3
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.3
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.3
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.29
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.14
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.14
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.23
rrl 1473813 n.156C>T non_coding_transcript_exon_variant 0.25
rrl 1473839 n.182G>T non_coding_transcript_exon_variant 0.27
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.18
rrl 1474051 n.394T>C non_coding_transcript_exon_variant 0.27
rrl 1474054 n.397T>C non_coding_transcript_exon_variant 0.2
rrl 1474056 n.399T>C non_coding_transcript_exon_variant 0.18
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.17
rrl 1474104 n.447G>A non_coding_transcript_exon_variant 0.17
rrl 1474111 n.454T>C non_coding_transcript_exon_variant 0.17
rrl 1474112 n.455T>A non_coding_transcript_exon_variant 0.17
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.15
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.17
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.14
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.31
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.24
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.27
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.27
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.21
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.15
rrl 1474959 n.1302C>T non_coding_transcript_exon_variant 0.17
rrl 1474962 n.1306delG non_coding_transcript_exon_variant 0.17
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.19
rrl 1474991 n.1334T>C non_coding_transcript_exon_variant 0.18
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.2
rrl 1475015 n.1358C>T non_coding_transcript_exon_variant 0.25
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.18
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.2
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.2
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.2
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.22
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.22
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.2
rrl 1475271 n.1614A>C non_coding_transcript_exon_variant 0.22
rrl 1475273 n.1616T>A non_coding_transcript_exon_variant 0.22
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.22
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.22
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.22
rrl 1475333 n.1676T>C non_coding_transcript_exon_variant 0.25
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.33
rrl 1475369 n.1712G>C non_coding_transcript_exon_variant 0.33
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.33
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.23
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.21
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.17
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.17
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.38
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.2
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.21
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.31
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.78
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.83
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.84
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.83
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.84
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.83
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.83
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.84
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.85
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.84
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.86
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.86
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.86
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.86
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.85
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.85
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.85
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.85
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.83
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.84
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.48
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.2
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.25
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.25
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.31
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.31
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.33
inhA 1674216 c.15G>C synonymous_variant 0.18
inhA 1674231 c.30T>C synonymous_variant 0.2
inhA 1674237 c.36T>C synonymous_variant 0.2
inhA 1674239 p.Ser13Thr missense_variant 0.2
inhA 1674243 c.42A>G synonymous_variant 0.19
inhA 1674279 c.78A>C synonymous_variant 0.3
inhA 1674280 p.Arg27Lys missense_variant 0.3
inhA 1674285 c.84A>G synonymous_variant 0.3
inhA 1674301 c.102_103delCC frameshift_variant 0.25
inhA 1674307 c.106C>T synonymous_variant 0.23
inhA 1674315 c.114C>G synonymous_variant 0.23
inhA 1674321 c.120G>C synonymous_variant 0.23
inhA 1674342 c.141T>C synonymous_variant 0.21
inhA 1674352 p.Thr51Val missense_variant 0.21
inhA 1674585 c.384T>C synonymous_variant 0.22
inhA 1674589 p.Met130Leu missense_variant 0.22
inhA 1674624 c.423A>C synonymous_variant 0.2
inhA 1674627 c.426T>G synonymous_variant 0.2
inhA 1674630 c.429C>G synonymous_variant 0.2
inhA 1674636 c.435C>G synonymous_variant 0.2
inhA 1674654 c.453G>C synonymous_variant 0.25
inhA 1674756 c.555T>C synonymous_variant 0.18
inhA 1674771 c.570C>G synonymous_variant 0.17
inhA 1674774 c.573A>G synonymous_variant 0.17
inhA 1674780 c.579T>G synonymous_variant 0.17
inhA 1674786 c.585G>C synonymous_variant 0.15
inhA 1674799 p.Ser200Ala missense_variant 0.15
inhA 1674803 p.Ala201Gly missense_variant 0.23
inhA 1674816 c.615T>C synonymous_variant 0.15
inhA 1674818 p.Ala206Val missense_variant 0.15
inhA 1674828 p.Glu209Asp missense_variant 0.15
inhA 1674829 p.Glu210Gln missense_variant 0.15
inhA 1674836 p.Gly212Ala missense_variant 0.14
inhA 1674839 p.Ala213Asp missense_variant 0.14
inhA 1674855 c.654C>T synonymous_variant 0.14
inhA 1674942 c.741T>C synonymous_variant 0.18
inhA 1674957 c.756G>C synonymous_variant 0.15
inhA 1674963 c.762G>C synonymous_variant 0.16
inhA 1674966 c.765T>C synonymous_variant 0.17
inhA 1674967 p.Asp256Thr missense_variant 0.17
inhA 1674993 c.792G>C synonymous_variant 0.18
inhA 1674994 p.His265Ser missense_variant 0.18
inhA 1675008 c.807C>G synonymous_variant 0.18
rpsA 1833541 c.-1T>C upstream_gene_variant 0.15
rpsA 1833589 c.48A>T synonymous_variant 0.14
rpsA 1833595 c.54T>C synonymous_variant 0.14
rpsA 1833619 c.78A>C synonymous_variant 0.17
rpsA 1833661 c.120A>G synonymous_variant 0.23
rpsA 1833667 c.126C>G synonymous_variant 0.23
rpsA 1833724 c.183C>G synonymous_variant 0.33
rpsA 1833727 c.186G>C synonymous_variant 0.33
rpsA 1833742 c.201A>G synonymous_variant 0.31
rpsA 1833745 c.204G>C synonymous_variant 0.31
rpsA 1833787 c.246C>G synonymous_variant 0.21
rpsA 1833790 c.249T>A synonymous_variant 0.21
rpsA 1833799 c.258C>G synonymous_variant 0.21
rpsA 1833811 c.270G>C synonymous_variant 0.17
rpsA 1833838 c.297G>C synonymous_variant 0.17
rpsA 1833841 c.300C>G synonymous_variant 0.17
rpsA 1833856 c.315A>G synonymous_variant 0.15
rpsA 1833862 c.321G>T synonymous_variant 0.17
rpsA 1833874 c.333T>C synonymous_variant 0.13
rpsA 1833928 c.387G>C synonymous_variant 0.18
rpsA 1833940 c.399C>G synonymous_variant 0.17
rpsA 1834264 c.723G>C synonymous_variant 0.19
rpsA 1834297 c.756C>G synonymous_variant 0.24
rpsA 1834303 c.762T>G synonymous_variant 0.22
rpsA 1834306 c.765T>C synonymous_variant 0.21
rpsA 1834348 c.807T>C synonymous_variant 0.18
rpsA 1834366 c.825A>G synonymous_variant 0.22
rpsA 1834375 c.834G>A synonymous_variant 0.23
rpsA 1834396 c.855G>C synonymous_variant 0.24
rpsA 1834411 c.870T>C synonymous_variant 0.32
rpsA 1834417 c.876G>C synonymous_variant 0.27
rpsA 1834423 c.882G>C synonymous_variant 0.3
rpsA 1834435 c.894G>C synonymous_variant 0.32
rpsA 1834451 c.910T>C synonymous_variant 0.35
rpsA 1834465 c.924T>C synonymous_variant 0.38
rpsA 1834468 c.927A>G synonymous_variant 0.32
rpsA 1834474 c.933C>G synonymous_variant 0.35
rpsA 1834489 c.948T>C synonymous_variant 0.33
rpsA 1834498 c.957C>T synonymous_variant 0.35
rpsA 1834528 c.987T>C synonymous_variant 0.36
rpsA 1834546 c.1005T>C synonymous_variant 0.4
rpsA 1834555 c.1014T>C synonymous_variant 0.33
rpsA 1834558 c.1017C>G synonymous_variant 0.32
rpsA 1834606 c.1065C>G synonymous_variant 0.28
rpsA 1834609 c.1068T>C synonymous_variant 0.28
rpsA 1834622 c.1081_1083delTCGinsAGC synonymous_variant 0.25
rpsA 1834633 c.1092A>G synonymous_variant 0.33
rpsA 1834639 c.1098T>C synonymous_variant 0.36
rpsA 1834666 c.1125G>C synonymous_variant 0.33
rpsA 1834669 c.1128G>C synonymous_variant 0.33
rpsA 1834688 c.1147_1149delAGTinsTCC synonymous_variant 0.36
rpsA 1834732 c.1191T>C synonymous_variant 0.4
rpsA 1834733 p.Ala398Pro missense_variant 0.4
rpsA 1834753 c.1212T>C synonymous_variant 0.43
rpsA 1834765 c.1224A>G synonymous_variant 0.38
rpsA 1834780 c.1239A>G synonymous_variant 0.33
rpsA 1834786 c.1245A>G synonymous_variant 0.29
rpsA 1834789 c.1248T>C synonymous_variant 0.27
rpsA 1834792 c.1251G>C synonymous_variant 0.27
tlyA 1918063 p.Pro42Ala missense_variant 1.0
ndh 2102494 c.549T>C synonymous_variant 0.19
ndh 2102497 c.546T>C synonymous_variant 0.18
ndh 2102509 c.534T>G synonymous_variant 0.18
ndh 2102517 p.Val176Ile missense_variant 0.21
ndh 2102518 c.525T>G synonymous_variant 0.22
ndh 2102527 c.516A>C synonymous_variant 0.29
ndh 2102533 c.510A>G synonymous_variant 0.29
ndh 2102545 c.498G>A synonymous_variant 0.24
ndh 2102559 p.Ser162Arg missense_variant 0.25
ndh 2102566 c.477A>G synonymous_variant 0.24
ndh 2102572 c.471A>G synonymous_variant 0.24
ndh 2102575 c.468G>A synonymous_variant 0.24
ndh 2102581 c.462T>G synonymous_variant 0.25
ndh 2102589 c.454T>C synonymous_variant 0.27
ndh 2102590 c.453A>C synonymous_variant 0.27
ndh 2102593 c.450C>G synonymous_variant 0.27
ndh 2102596 c.447C>G synonymous_variant 0.27
ndh 2102599 c.444T>C synonymous_variant 0.27
ndh 2102604 p.Leu147Val missense_variant 0.27
ndh 2102608 c.433_435delTTGinsCTC synonymous_variant 0.25
ndh 2102635 c.408C>G synonymous_variant 0.21
ndh 2102638 c.405A>G synonymous_variant 0.21
ndh 2102985 p.Ile20Val missense_variant 1.0
katG 2155020 c.1092C>T synonymous_variant 0.15
katG 2155029 c.1083C>G synonymous_variant 0.17
katG 2155032 c.1080T>C synonymous_variant 0.17
katG 2155054 p.Tyr353Phe missense_variant 0.15
katG 2155056 c.1056A>G synonymous_variant 0.15
katG 2155062 c.1050T>C synonymous_variant 0.18
katG 2155065 c.1047C>G synonymous_variant 0.18
katG 2155068 c.1044T>C synonymous_variant 0.18
katG 2155071 c.1041T>C synonymous_variant 0.18
katG 2155080 c.1032G>C synonymous_variant 0.18
katG 2155856 p.Thr86Ser missense_variant 1.0
PPE35 2169233 c.1379delT frameshift_variant 1.0
kasA 2518504 c.390T>C synonymous_variant 0.23
kasA 2518506 p.Ala131Glu missense_variant 0.23
kasA 2518513 c.399C>G synonymous_variant 0.23
kasA 2518519 c.405G>C synonymous_variant 0.25
kasA 2518528 c.414C>G synonymous_variant 0.21
kasA 2518540 c.426T>G synonymous_variant 0.25
kasA 2518561 c.447T>C synonymous_variant 0.25
kasA 2518567 c.453G>C synonymous_variant 0.25
kasA 2518570 c.456G>C synonymous_variant 0.25
kasA 2518574 p.Ile154Val missense_variant 0.25
kasA 2518588 c.474T>C synonymous_variant 0.3
kasA 2518591 c.477G>C synonymous_variant 0.33
kasA 2518609 p.Met165Ile missense_variant 0.3
kasA 2518621 c.507G>A synonymous_variant 0.38
kasA 2518663 c.549T>C synonymous_variant 0.27
kasA 2518672 c.558G>C synonymous_variant 0.36
kasA 2518687 c.573C>T synonymous_variant 0.4
kasA 2518696 c.582C>G synonymous_variant 0.4
kasA 2518702 c.588C>T synonymous_variant 0.4
kasA 2518711 c.597A>G synonymous_variant 0.4
kasA 2518714 c.600A>C synonymous_variant 0.4
kasA 2518717 c.603C>T synonymous_variant 0.33
kasA 2518723 p.Glu203Asp missense_variant 0.31
kasA 2518732 c.618C>G synonymous_variant 0.29
kasA 2518741 c.627G>C synonymous_variant 0.21
kasA 2518747 c.633C>G synonymous_variant 0.31
kasA 2518768 c.654C>G synonymous_variant 0.29
kasA 2518783 c.669T>C synonymous_variant 0.31
kasA 2518792 c.678C>G synonymous_variant 0.29
kasA 2518795 c.681C>G synonymous_variant 0.29
kasA 2519095 c.981C>G synonymous_variant 0.17
kasA 2519098 c.984C>G synonymous_variant 0.17
kasA 2519104 c.990T>A synonymous_variant 0.18
kasA 2519108 p.Asp332His missense_variant 0.17
kasA 2519111 p.Gln333Glu missense_variant 0.18
kasA 2519116 c.1002C>G synonymous_variant 0.18
kasA 2519125 c.1011C>T synonymous_variant 0.2
kasA 2519137 c.1023T>C synonymous_variant 0.21
kasA 2519146 c.1032C>A synonymous_variant 0.19
kasA 2519152 c.1038G>A synonymous_variant 0.19
kasA 2519167 c.1053T>C synonymous_variant 0.19
kasA 2519173 c.1059C>G synonymous_variant 0.23
kasA 2519176 c.1062G>A synonymous_variant 0.23
kasA 2519197 c.1083G>C synonymous_variant 0.15
folC 2747236 c.363G>C synonymous_variant 0.15
folC 2747243 p.Gln119Arg missense_variant 0.17
folC 2747245 c.354G>C synonymous_variant 0.15
folC 2747264 p.Gly112Ala missense_variant 0.17
folC 2747275 c.324T>C synonymous_variant 0.17
folC 2747281 c.318A>G synonymous_variant 0.17
folC 2747289 p.Pro104Ala missense_variant 0.2
folC 2747290 c.309A>C synonymous_variant 0.2
folC 2747293 c.306G>A synonymous_variant 0.2
folC 2747302 c.297A>G synonymous_variant 0.17
folC 2747314 c.285A>C synonymous_variant 0.17
folC 2747317 c.282C>G synonymous_variant 0.17
Rv2752c 3064893 c.1299C>G synonymous_variant 0.17
Rv2752c 3064896 c.1296T>C synonymous_variant 0.17
Rv2752c 3064911 c.1281C>G synonymous_variant 0.18
Rv2752c 3064928 c.1264T>C synonymous_variant 0.17
Rv2752c 3064962 c.1230C>A synonymous_variant 0.15
Rv2752c 3065376 c.815delT frameshift_variant 1.0
Rv2752c 3066351 c.-160G>T upstream_gene_variant 1.0
thyX 3067277 c.669C>G synonymous_variant 0.23
thyX 3067280 c.666G>C synonymous_variant 0.23
thyX 3067284 p.Ala221Asp missense_variant 0.25
thyX 3067286 c.660C>G synonymous_variant 0.25
thyX 3067289 c.657C>G synonymous_variant 0.25
thyX 3067293 p.Gln218Arg missense_variant 0.27
thyX 3067304 c.642A>G synonymous_variant 0.23
thyX 3067316 c.630A>G synonymous_variant 0.25
thyX 3067325 c.621A>G synonymous_variant 0.23
thyX 3067355 c.591A>C synonymous_variant 0.18
thyX 3067367 c.579G>C synonymous_variant 0.17
thyX 3067376 c.570G>C synonymous_variant 0.15
thyX 3067391 c.555G>C synonymous_variant 0.21
thyX 3067394 c.552G>C synonymous_variant 0.21
thyX 3067412 c.534C>G synonymous_variant 0.23
thyX 3067439 c.507A>G synonymous_variant 0.17
thyX 3067445 c.501C>G synonymous_variant 0.18
thyX 3067451 c.495G>A synonymous_variant 0.18
thyX 3067457 c.489C>G synonymous_variant 0.18
thyX 3067463 p.Ile161Val missense_variant 0.18
thyX 3067466 c.480G>C synonymous_variant 0.18
thyX 3067470 p.Asn159Ser missense_variant 0.2
thyX 3067493 c.453A>G synonymous_variant 0.2
thyX 3067500 p.Lys149Arg missense_variant 0.2
thyX 3067515 p.Ser144Thr missense_variant 0.18
thyX 3067526 c.420C>G synonymous_variant 0.22
thyX 3067731 p.Val72Ala missense_variant 0.94
thyX 3067793 c.153T>C synonymous_variant 0.14
thyX 3067799 c.147G>A synonymous_variant 0.16
thyX 3067802 c.144C>G synonymous_variant 0.16
thyX 3067825 p.Arg41Gly missense_variant 0.84
thyX 3067826 c.120C>G synonymous_variant 0.16
thyX 3067850 c.96A>C synonymous_variant 0.18
thyX 3067874 c.72C>A synonymous_variant 0.14
thyX 3067886 c.60A>C synonymous_variant 0.14
thyX 3067889 c.57C>G synonymous_variant 0.14
thyX 3067894 c.52T>C synonymous_variant 0.14
thyA 3074031 c.441T>C synonymous_variant 0.2
fbiD 3338949 c.-169_-168insT upstream_gene_variant 1.0
Rv3083 3448707 c.204G>A synonymous_variant 1.0
Rv3083 3449768 p.Thr422Lys missense_variant 1.0
fbiB 3641403 c.-132C>T upstream_gene_variant 0.88
alr 3840344 c.1077A>G synonymous_variant 0.15
alr 3840364 c.1056delC frameshift_variant 0.17
alr 3840380 p.Met347Val missense_variant 0.17
alr 3841257 p.His55Leu missense_variant 1.0
rpoA 3877601 p.Gln303* stop_gained 0.87
rpoA 3877656 c.852T>C synonymous_variant 0.16
rpoA 3877764 c.744C>G synonymous_variant 0.17
rpoA 3877770 c.738A>G synonymous_variant 0.15
rpoA 3877776 c.732T>C synonymous_variant 0.15
rpoA 3877782 c.726T>C synonymous_variant 0.15
rpoA 3877839 c.669G>C synonymous_variant 0.15
rpoA 3878040 c.468T>C synonymous_variant 0.14
rpoA 3878049 c.459G>C synonymous_variant 0.14
rpoA 3878055 c.453A>G synonymous_variant 0.27
rpoA 3878061 c.447G>C synonymous_variant 0.25
rpoA 3878067 c.441C>G synonymous_variant 0.25
rpoA 3878070 c.438T>C synonymous_variant 0.25
rpoA 3878082 c.426T>C synonymous_variant 0.27
rpoA 3878094 c.414C>G synonymous_variant 0.31
rpoA 3878100 c.408C>G synonymous_variant 0.31
rpoA 3878103 c.405A>G synonymous_variant 0.29
rpoA 3878106 c.402G>C synonymous_variant 0.31
rpoA 3878118 c.390T>C synonymous_variant 0.29
rpoA 3878141 p.Met123Leu missense_variant 0.25
rpoA 3878142 p.Gly122Glu missense_variant 0.27
rpoA 3878169 c.339G>C synonymous_variant 0.23
rpoA 3878184 c.324C>T synonymous_variant 0.22
rpoA 3878187 c.321C>G synonymous_variant 0.22
rpoA 3878193 c.315T>C synonymous_variant 0.18
rpoA 3878199 c.309T>C synonymous_variant 0.27
rpoA 3878271 c.237T>C synonymous_variant 0.25
rpoA 3878284 p.Glu75Ala missense_variant 0.25
rpoA 3878292 c.216T>C synonymous_variant 0.25
rpoA 3878298 c.210A>G synonymous_variant 0.25
rpoA 3878304 c.204G>C synonymous_variant 0.22
rpoA 3878313 c.195G>C synonymous_variant 0.18
rpoA 3878322 c.186A>G synonymous_variant 0.2
rpoA 3878331 c.177A>G synonymous_variant 0.18
rpoA 3878334 c.174T>C synonymous_variant 0.18
rpoA 3878337 c.171T>C synonymous_variant 0.18
ddn 3986668 c.-176T>C upstream_gene_variant 1.0
clpC1 4038740 c.1965G>C synonymous_variant 0.15
clpC1 4038782 c.1923G>C synonymous_variant 0.14
clpC1 4038790 c.1915C>T synonymous_variant 0.15
clpC1 4038812 c.1893T>C synonymous_variant 0.15
clpC1 4038815 c.1890G>T synonymous_variant 0.15
clpC1 4038851 c.1854G>A synonymous_variant 0.17
clpC1 4038878 c.1827A>G synonymous_variant 0.18
clpC1 4038908 c.1797C>G synonymous_variant 0.17
clpC1 4038914 c.1791G>C synonymous_variant 0.17
clpC1 4038923 c.1782A>G synonymous_variant 0.17
clpC1 4038932 c.1773G>C synonymous_variant 0.17
clpC1 4038953 c.1752A>G synonymous_variant 0.17
clpC1 4038956 c.1749T>C synonymous_variant 0.15
clpC1 4038965 c.1740T>C synonymous_variant 0.17
clpC1 4038971 c.1734T>C synonymous_variant 0.17
clpC1 4038974 c.1731T>C synonymous_variant 0.17
clpC1 4038989 c.1716T>C synonymous_variant 0.17
clpC1 4039565 c.1140G>C synonymous_variant 0.15
clpC1 4039576 p.Ala377Ser missense_variant 0.17
clpC1 4039577 c.1128T>C synonymous_variant 0.17
clpC1 4039748 c.957G>C synonymous_variant 0.17
clpC1 4039760 c.945T>C synonymous_variant 0.16
clpC1 4039766 c.939T>C synonymous_variant 0.21
clpC1 4039781 c.924G>C synonymous_variant 0.17
clpC1 4039787 p.Ser306Cys missense_variant 0.17
clpC1 4039793 c.912C>G synonymous_variant 0.17
clpC1 4039817 c.888A>T synonymous_variant 0.17
clpC1 4039820 c.885T>G synonymous_variant 0.21
clpC1 4039831 c.874T>C synonymous_variant 0.16
clpC1 4039832 c.873C>G synonymous_variant 0.16
embC 4240105 c.243C>T synonymous_variant 0.17
embC 4240123 c.261C>G synonymous_variant 0.21
embC 4240141 c.279A>G synonymous_variant 0.21
embC 4240148 c.288_291delATCG frameshift_variant 0.21
embC 4240155 p.Gln98Pro missense_variant 0.21
embC 4240183 c.321A>G synonymous_variant 0.2
embC 4240204 c.342T>C synonymous_variant 0.21
embC 4240210 c.348C>G synonymous_variant 0.21
embC 4240216 c.354T>C synonymous_variant 0.21
embC 4240229 p.Leu123Ile missense_variant 0.17
embC 4240232 p.Gln124Val missense_variant 0.17
embC 4240780 c.918T>C synonymous_variant 0.21
embC 4240783 c.921G>C synonymous_variant 0.21
embC 4240789 c.927T>C synonymous_variant 0.2
embC 4240819 c.957A>G synonymous_variant 0.19
embC 4240825 c.963G>A synonymous_variant 0.19
embC 4240831 c.969T>G synonymous_variant 0.2
embC 4240867 c.1005T>G synonymous_variant 0.19
embC 4240870 c.1008T>C synonymous_variant 0.19
embC 4240879 c.1017G>C synonymous_variant 0.21
embC 4240880 p.Ala340Thr missense_variant 0.16
embC 4240885 c.1023T>C synonymous_variant 0.16
embC 4241671 c.1809T>G synonymous_variant 0.18
embC 4241689 c.1827G>C synonymous_variant 0.25
embC 4241691 p.Gly610Ala missense_variant 0.25
embC 4241695 c.1833T>G synonymous_variant 0.29
embC 4241704 c.1842C>G synonymous_variant 0.29
embC 4241707 c.1845G>C synonymous_variant 0.29
embC 4241713 c.1851G>C synonymous_variant 0.29
embC 4241719 c.1857G>C synonymous_variant 0.25
embC 4241725 c.1863G>C synonymous_variant 0.22
embC 4241727 p.Phe622Tyr missense_variant 0.22
embC 4241741 p.Val627Leu missense_variant 0.25
embC 4241746 c.1884C>T synonymous_variant 0.25
embC 4241747 p.Val629Leu missense_variant 0.25
embC 4241750 p.Leu630Val missense_variant 0.25
embC 4241755 c.1893C>G synonymous_variant 0.25
embC 4241770 c.1908T>C synonymous_variant 0.22
embC 4241864 p.Leu668Met missense_variant 1.0
embB 4245557 c.-957G>A upstream_gene_variant 1.0
embB 4247395 c.882C>G synonymous_variant 0.17
embB 4247401 c.888T>C synonymous_variant 0.17
embB 4247437 c.924A>G synonymous_variant 0.2
embB 4247440 c.927C>G synonymous_variant 0.2
embB 4247464 c.951C>G synonymous_variant 0.27
embB 4247470 c.957T>C synonymous_variant 0.27
embB 4247491 c.978G>C synonymous_variant 0.27
embB 4247497 c.984T>C synonymous_variant 0.27
embB 4247500 c.987C>G synonymous_variant 0.2
embB 4247512 c.999T>C synonymous_variant 0.2
embB 4247536 c.1023C>G synonymous_variant 0.17
embB 4247590 c.1077A>C synonymous_variant 0.18
embB 4249521 p.Ala1003Val missense_variant 0.17
embB 4249525 c.3012T>C synonymous_variant 0.17
embB 4249528 c.3015C>G synonymous_variant 0.17
embB 4249529 p.Ile1006Val missense_variant 0.17
embB 4249532 p.Ala1007Thr missense_variant 0.15
embB 4249537 c.3024A>G synonymous_variant 0.15
embB 4249543 c.3030G>C synonymous_variant 0.15
embB 4249558 c.3045A>C synonymous_variant 0.15
embB 4249564 c.3051C>T synonymous_variant 0.15
embB 4249568 p.Ser1019Thr missense_variant 0.15
embB 4249573 c.3060T>C synonymous_variant 0.14
embB 4249580 p.Leu1023Met missense_variant 0.15
embB 4249594 c.3081G>C synonymous_variant 0.17
embB 4249600 c.3087A>G synonymous_variant 0.17
embB 4249609 c.3096T>C synonymous_variant 0.2
embB 4249615 c.3102C>G synonymous_variant 0.18
embB 4249624 c.3111C>G synonymous_variant 0.17
embB 4249640 c.3127T>C synonymous_variant 0.17
ubiA 4269301 p.Leu178Pro missense_variant 0.29
ethA 4327092 p.Ala128Pro missense_variant 1.0
gid 4408151 p.Leu18Val missense_variant 1.0