Rv0006 - c.-134C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
102 Sensitive
1 RR-TB
32 HR-TB
4 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.9 | 130 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| La1.7 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1;lineage4.9 | 2 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La3;lineage4.9 | 6 |
| lineage4.1.1.3 | 1 |
| lineage3 | 2 |
| lineage4.2.1 | 1 |
| lineage2.2.1 | 7 |
| M.canetti;lineage4.9 | 2 |
| lineage5.1.4 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 3 | |
| lineage4.3.3 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4 | 4 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.3.2.1 | 4 |
| lineage4.4.1.1.1 | 1 |
| La1.8.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 210 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR9970980 | Other | lineage4.1.2 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR2514552 | Sensitive | lineage3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR736831 | Other | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1159378 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR13265833 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR751326 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR363502 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR369151 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None |
|---|
