Rv0005 - c.1914G>C
Drug resistance types
46 Sensitive
5 RR-TB
43 HR-TB
14 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
90 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;M.canetti;lineage4.9 | 3 |
| M.canetti;lineage2.2 | 2 |
| lineage5.1.4 | 1 |
| lineage4.9 | 109 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.2;lineage4.9 | 2 |
| 2 | |
| lineage2.2.1 | 5 |
| lineage3 | 2 |
| lineage4.4.1.1.1 | 1 |
| lineage1.1.2;lineage2.2.1 | 1 |
| La3;lineage4.9 | 7 |
| lineage4.1.2.1 | 3 |
| lineage4.2.2 | 1 |
| lineage4.8 | 1 |
| lineage4.1.1.3 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| La1.7;lineage4.9 | 4 |
| La1.7.1;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4 | 5 |
| lineage1.2.1.2.1 | 2 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.1 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage1.1.1;lineage4 | 1 |
| La3;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage4.5 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.2.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR6045503 | Other | lineage4.9 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4817998 | Other | lineage3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6046046 | Other | lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR4797284 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1 | in | ERR3797048 | Other | La3;lineage4.9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR926156 | Other | lineage4.9 | None | ERR4811340 | Sensitive | lineage4.2.2 | cn | ERR736848 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | ERR373946 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR22424854 | RR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR3675582 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR363490 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR9125789 | HR-TB | lineage1.2.1.2.1 | None | SRR16058126 | HR-TB | lineage1.2.1.2.1 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR6046485 | Other | lineage4.9 | None | ERR363479 | Other | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6045053 | Other | lineage4 | None | ERR4796577 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR363499 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR14782054 | Other | lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045706 | Other | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR473332 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR369159 | Other | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR349300 | Other | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6045555 | Other | lineage4.9 | None | ERR11068099 | Sensitive | lineage4 | None | ERR181887 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR4797471 | Pre-XDR-TB | lineage4.9 | in | ERR3283011 | Other | La3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR349264 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | ERR363453 | Other | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR373947 | Other | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4769450 | Other | lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None |
|---|
