Rv0006 - c.1644G>C
Drug resistance types
88 Sensitive
4 RR-TB
119 HR-TB
7 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
63 Other
lineage Counts
| lineage | Count |
|---|---|
| 87 | |
| lineage2.2.1 | 14 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.2 | 1 |
| lineage4.4.2 | 1 |
| lineage3.1 | 2 |
| lineage4.1.2.1 | 9 |
| lineage4 | 65 |
| lineage4.9 | 59 |
| La1.8.1 | 1 |
| lineage5.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| lineage4.5 | 3 |
| lineage2.2 | 6 |
| lineage4.3.3 | 3 |
| lineage4.3.4 | 1 |
| lineage4.3.2 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1.2 | 1 |
| La3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.2.1.2 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.1 | 3 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1 | 2 |
| lineage2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3 | 3 |
| lineage4.2.1 | 2 |
| lineage5.1.4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.1 | 1 |
| lineage4.9.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 285 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323036 | HR-TB | None | ERR323041 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9971114 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR10796569 | Other | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4 | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3445503 | HR-TB | None | ERR363456 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797046 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR400326 | Sensitive | lineage4 | None | ERR387051 | HR-TB | None | ERR400320 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188247 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4797313 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4798431 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4811493 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR736839 | Other | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1169249 | Other | La3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13837824 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176779 | HR-TB | None | ERR176778 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3675210 | Sensitive | lineage4.9 | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4815263 | Sensitive | lineage4.9 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675229 | Other | lineage4 | None | SRR3675249 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675265 | Other | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | ERR176643 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | SRR3675387 | Sensitive | None | SRR3675456 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | SRR3675527 | RR-TB | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR4816113 | Sensitive | lineage4.1.1 | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675558 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4817998 | Other | lineage3 | None | ERR2446566 | Other | lineage4.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2512770 | Other | lineage4.2.1 | None | ERR2513283 | Other | lineage5.1.4 | None | SRR5341396 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341456 | Other | None | ERR1035138 | MDR-TB | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341315 | Sensitive | None | ERR4819933 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341323 | Sensitive | lineage4 | None | SRR6045450 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6046133 | HR-TB | None | ERR278594 | HR-TB | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045050 | Sensitive | lineage4.3.2.1 | None | SRR6045952 | HR-TB | None | SRR6045399 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046299 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046802 | Other | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR6325447 | HR-TB | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831638 | Sensitive | None | ERR4831719 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None |
|---|
