Run ID: ERR4818811
Sample name:
Date: 01-04-2023 15:45:53
Number of reads: 1212024
Percentage reads mapped: 82.66
Strain: lineage2.2.1
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Ala | missense_variant | 0.96 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 0.89 | rifampicin |
rpoC | 764841 | p.Ile491Thr | missense_variant | 0.87 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288764 | p.Thr160Pro | missense_variant | 1.0 | pyrazinamide |
ethA | 4326317 | c.1156delT | frameshift_variant | 1.0 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8354 | c.1053G>C | synonymous_variant | 0.1 |
gyrA | 8840 | c.1539C>T | synonymous_variant | 0.15 |
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.17 |
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.17 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.14 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.14 |
gyrA | 8915 | c.1614A>G | synonymous_variant | 0.23 |
gyrA | 8924 | c.1623C>T | synonymous_variant | 0.25 |
gyrA | 8939 | c.1638T>G | synonymous_variant | 0.21 |
gyrA | 8945 | c.1644G>C | synonymous_variant | 0.18 |
gyrA | 8946 | c.1645_1647delTTGinsCTC | synonymous_variant | 0.19 |
gyrA | 8967 | p.Ala556Lys | missense_variant | 0.21 |
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.23 |
gyrA | 8993 | c.1692C>T | synonymous_variant | 0.22 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.22 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.22 |
gyrA | 9044 | c.1743C>G | synonymous_variant | 0.12 |
gyrA | 9051 | c.1750T>C | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.21 |
rpoB | 760196 | c.390C>G | synonymous_variant | 0.19 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.21 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.21 |
rpoB | 760244 | c.438G>C | synonymous_variant | 0.19 |
rpoB | 760376 | p.Asp190Glu | missense_variant | 0.14 |
rpoB | 760382 | c.576G>C | synonymous_variant | 0.14 |
rpoB | 760400 | c.594G>C | synonymous_variant | 0.19 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.19 |
rpoB | 760407 | p.Ser201Gly | missense_variant | 0.19 |
rpoB | 760412 | c.606C>T | synonymous_variant | 0.19 |
rpoB | 760415 | c.609C>T | synonymous_variant | 0.19 |
rpoB | 760418 | c.612G>A | synonymous_variant | 0.19 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.3 |
rpoB | 760433 | c.627C>T | synonymous_variant | 0.32 |
rpoB | 760454 | c.648C>G | synonymous_variant | 0.35 |
rpoB | 760457 | c.651C>T | synonymous_variant | 0.38 |
rpoB | 760469 | c.663C>T | synonymous_variant | 0.29 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.21 |
rpoB | 760478 | c.672C>T | synonymous_variant | 0.21 |
rpoB | 760481 | c.675G>T | synonymous_variant | 0.23 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.23 |
rpoB | 760487 | c.681G>C | synonymous_variant | 0.31 |
rpoB | 760502 | c.696C>G | synonymous_variant | 0.25 |
rpoB | 760508 | c.702G>A | synonymous_variant | 0.24 |
rpoB | 760511 | c.705G>C | synonymous_variant | 0.22 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.17 |
rpoB | 760532 | c.726T>C | synonymous_variant | 0.26 |
rpoB | 760541 | c.735G>T | synonymous_variant | 0.21 |
rpoB | 760561 | c.757_758delCG | frameshift_variant | 0.24 |
rpoB | 760571 | c.765G>C | synonymous_variant | 0.24 |
rpoB | 760588 | p.Thr261Ile | missense_variant | 0.18 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.22 |
rpoB | 760595 | c.789C>T | synonymous_variant | 0.24 |
rpoB | 760596 | p.Thr264Pro | missense_variant | 0.25 |
rpoB | 760607 | c.801G>C | synonymous_variant | 0.31 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.26 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.12 |
rpoB | 760646 | c.840C>G | synonymous_variant | 0.12 |
rpoB | 760655 | c.849A>G | synonymous_variant | 0.12 |
rpoB | 760661 | c.855A>C | synonymous_variant | 0.12 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.14 |
rpoB | 761027 | c.1221A>C | synonymous_variant | 0.14 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.14 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.13 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.11 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.14 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.14 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.14 |
rpoB | 761258 | c.1452G>A | synonymous_variant | 0.14 |
rpoB | 761261 | c.1455G>C | synonymous_variant | 0.15 |
rpoB | 761264 | c.1458C>G | synonymous_variant | 0.15 |
rpoB | 761273 | c.1467T>C | synonymous_variant | 0.18 |
rpoB | 761282 | c.1476C>T | synonymous_variant | 0.15 |
rpoB | 761288 | c.1482G>T | synonymous_variant | 0.15 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.11 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.11 |
rpoB | 762038 | c.2232C>T | synonymous_variant | 0.15 |
rpoB | 762047 | c.2241G>A | synonymous_variant | 0.15 |
rpoB | 762053 | c.2247T>C | synonymous_variant | 0.14 |
rpoB | 762056 | c.2250G>A | synonymous_variant | 0.14 |
rpoB | 762065 | c.2259T>G | synonymous_variant | 0.14 |
rpoB | 762083 | c.2277T>C | synonymous_variant | 0.12 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.11 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.11 |
rpoB | 762194 | c.2388G>C | synonymous_variant | 0.12 |
rpoB | 762221 | c.2415G>A | synonymous_variant | 0.22 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.28 |
rpoB | 762236 | c.2430G>C | synonymous_variant | 0.24 |
rpoB | 762245 | c.2439G>C | synonymous_variant | 0.27 |
rpoB | 762284 | c.2478G>T | synonymous_variant | 0.26 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.18 |
rpoB | 762296 | c.2490G>C | synonymous_variant | 0.17 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.11 |
rpoB | 762329 | c.2523G>C | synonymous_variant | 0.11 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.13 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.13 |
rpoC | 763082 | c.-288C>T | upstream_gene_variant | 0.13 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.14 |
rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.11 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.17 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.14 |
rpoC | 763618 | c.249C>T | synonymous_variant | 0.14 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.14 |
rpoC | 763747 | c.378G>A | synonymous_variant | 0.15 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.12 |
rpoC | 763768 | c.399C>T | synonymous_variant | 0.12 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.11 |
rpoC | 764339 | c.970C>T | synonymous_variant | 0.13 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.12 |
rpoC | 764371 | c.1002G>T | synonymous_variant | 0.12 |
rpoC | 764377 | c.1008C>G | synonymous_variant | 0.12 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.12 |
rpoC | 764383 | c.1014C>T | synonymous_variant | 0.12 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.12 |
rpoC | 764407 | p.Arg346Ser | missense_variant | 0.11 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.13 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.14 |
rpoC | 764530 | c.1161C>T | synonymous_variant | 0.14 |
rpoC | 764533 | c.1164C>A | synonymous_variant | 0.14 |
rpoC | 764536 | c.1167G>T | synonymous_variant | 0.14 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.13 |
rpoC | 764548 | c.1179G>A | synonymous_variant | 0.14 |
rpoC | 764554 | c.1185C>T | synonymous_variant | 0.14 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.18 |
rpoC | 764575 | c.1206T>G | synonymous_variant | 0.2 |
rpoC | 764578 | c.1209C>G | synonymous_variant | 0.2 |
rpoC | 764593 | c.1224C>T | synonymous_variant | 0.17 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.15 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.15 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.16 |
rpoC | 764635 | c.1266C>T | synonymous_variant | 0.14 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.13 |
rpoC | 764713 | c.1344G>T | synonymous_variant | 0.26 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 0.23 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.17 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 0.17 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.17 |
rpoC | 764803 | c.1434C>T | synonymous_variant | 0.18 |
rpoC | 764810 | p.Pro481Ala | missense_variant | 0.15 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.14 |
rpoC | 764827 | c.1458G>C | synonymous_variant | 0.14 |
rpoC | 764858 | c.1489T>C | synonymous_variant | 0.16 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.11 |
rpoC | 764912 | p.Met515Leu | missense_variant | 0.1 |
rpoC | 764932 | c.1563C>A | synonymous_variant | 0.14 |
rpoC | 764948 | c.1579T>C | synonymous_variant | 0.12 |
rpoC | 764968 | c.1599T>C | synonymous_variant | 0.14 |
rpoC | 765073 | c.1704G>C | synonymous_variant | 0.12 |
rpoC | 765449 | p.Ala694Ser | missense_variant | 0.15 |
rpoC | 765454 | c.2085C>G | synonymous_variant | 0.15 |
rpoC | 765469 | c.2100G>C | synonymous_variant | 0.16 |
rpoC | 765478 | c.2109T>G | synonymous_variant | 0.18 |
rpoC | 765480 | p.Tyr704Phe | missense_variant | 0.18 |
rpoC | 765496 | c.2127C>T | synonymous_variant | 0.16 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.16 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
rpoC | 767080 | c.3711G>C | synonymous_variant | 0.24 |
rpoC | 767098 | c.3729T>C | synonymous_variant | 0.33 |
rpoC | 767100 | p.Lys1244Arg | missense_variant | 0.33 |
rpoC | 767104 | c.3735C>G | synonymous_variant | 0.36 |
rpoC | 767107 | c.3738C>T | synonymous_variant | 0.36 |
rpoC | 767119 | c.3750A>G | synonymous_variant | 0.31 |
rpoC | 767125 | c.3756G>C | synonymous_variant | 0.25 |
rpoC | 767134 | c.3765C>T | synonymous_variant | 0.23 |
rpoC | 767138 | c.3769C>T | synonymous_variant | 0.23 |
rpoC | 767149 | c.3780C>T | synonymous_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.96 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781829 | c.270G>C | synonymous_variant | 0.12 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.11 |
fbiC | 1304533 | p.Leu535Ile | missense_variant | 0.12 |
fbiC | 1304539 | p.Arg537Ala | missense_variant | 0.12 |
fbiC | 1304547 | c.1617C>G | synonymous_variant | 0.12 |
fbiC | 1304559 | p.Glu543Asp | missense_variant | 0.12 |
fbiC | 1304562 | c.1632G>C | synonymous_variant | 0.12 |
fbiC | 1304565 | c.1635C>G | synonymous_variant | 0.11 |
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.11 |
fbiC | 1304574 | c.1644C>G | synonymous_variant | 0.12 |
fbiC | 1304578 | c.1648_1650delCGTinsAGG | synonymous_variant | 0.12 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472464 | n.619A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472860 | n.1015C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472861 | n.1016G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473082 | n.1237G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473099 | n.1254T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473129 | n.1284C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473288 | n.1443C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473812 | n.155G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473814 | n.157A>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473815 | n.158T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1473829 | n.172G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1473831 | n.174G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473832 | n.175C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473839 | n.182G>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473899 | n.242A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473916 | n.259C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473924 | n.267_268insT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473943 | n.286G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473945 | n.288T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473946 | n.289A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473950 | n.293G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474626 | n.969T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474630 | n.973T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474639 | n.982G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474640 | n.983C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475443 | n.1786G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475452 | n.1795C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475475 | n.1818C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475479 | n.1822C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475480 | n.1823A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1674049 | p.Gln204Glu | missense_variant | 0.14 |
inhA | 1674054 | c.-148T>C | upstream_gene_variant | 0.14 |
inhA | 1674060 | c.-142A>G | upstream_gene_variant | 0.16 |
inhA | 1674069 | c.-133G>A | upstream_gene_variant | 0.16 |
inhA | 1674072 | c.-130C>G | upstream_gene_variant | 0.16 |
fabG1 | 1674079 | p.Pro214Ala | missense_variant | 0.14 |
inhA | 1674084 | c.-118C>T | upstream_gene_variant | 0.14 |
inhA | 1674592 | p.Ala131Thr | missense_variant | 0.12 |
rpsA | 1833790 | c.249T>C | synonymous_variant | 0.11 |
rpsA | 1833802 | c.261A>G | synonymous_variant | 0.14 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.14 |
rpsA | 1833829 | c.288A>G | synonymous_variant | 0.18 |
rpsA | 1833832 | c.291G>A | synonymous_variant | 0.18 |
rpsA | 1833838 | c.297G>T | synonymous_variant | 0.18 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.19 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.22 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.18 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.21 |
rpsA | 1833874 | c.333T>G | synonymous_variant | 0.23 |
rpsA | 1833886 | c.345C>G | synonymous_variant | 0.22 |
rpsA | 1833892 | c.351G>A | synonymous_variant | 0.19 |
rpsA | 1833894 | p.Ala118Glu | missense_variant | 0.19 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.15 |
rpsA | 1833934 | c.393C>T | synonymous_variant | 0.17 |
rpsA | 1833949 | c.408T>C | synonymous_variant | 0.16 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.12 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.12 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.12 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.18 |
rpsA | 1834073 | p.Lys178Arg | missense_variant | 0.18 |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834228 | c.687C>A | synonymous_variant | 0.16 |
rpsA | 1834231 | c.690T>G | synonymous_variant | 0.17 |
rpsA | 1834234 | c.693G>T | synonymous_variant | 0.17 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.17 |
rpsA | 1834246 | c.705G>T | synonymous_variant | 0.15 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.17 |
rpsA | 1834252 | c.711C>G | synonymous_variant | 0.15 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.15 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.15 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.12 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.17 |
rpsA | 1834378 | c.837T>C | synonymous_variant | 0.17 |
rpsA | 1834396 | c.855G>T | synonymous_variant | 0.18 |
rpsA | 1834405 | c.864C>T | synonymous_variant | 0.14 |
rpsA | 1834408 | c.867C>T | synonymous_variant | 0.14 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.14 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.14 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.13 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.13 |
rpsA | 1834520 | p.Ala327Ser | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102895 | c.148C>T | synonymous_variant | 0.12 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.94 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168432 | c.2181G>A | synonymous_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714478 | c.855C>G | synonymous_variant | 0.11 |
Rv2752c | 3065414 | p.Ser260Thr | missense_variant | 0.14 |
thyA | 3074022 | c.450C>T | synonymous_variant | 0.22 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.2 |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.15 |
thyA | 3074045 | c.427C>T | synonymous_variant | 0.13 |
thyA | 3074056 | p.Glu139Pro | missense_variant | 0.13 |
thyA | 3074061 | c.411A>G | synonymous_variant | 0.13 |
thyA | 3074067 | c.405C>G | synonymous_variant | 0.13 |
thyA | 3074087 | p.Ile129Val | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449112 | c.609T>C | synonymous_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474208 | c.206delA | frameshift_variant | 0.14 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
Rv3236c | 3613025 | p.Ser31* | stop_gained | 0.12 |
rpoA | 3877752 | p.Asp252Glu | missense_variant | 0.12 |
rpoA | 3877758 | c.750G>C | synonymous_variant | 0.11 |
rpoA | 3877764 | c.744C>G | synonymous_variant | 0.1 |
rpoA | 3877770 | c.738A>G | synonymous_variant | 0.1 |
rpoA | 3877773 | c.735G>C | synonymous_variant | 0.12 |
rpoA | 3877776 | c.732T>C | synonymous_variant | 0.12 |
rpoA | 3877782 | c.726T>C | synonymous_variant | 0.12 |
rpoA | 3877785 | c.723C>A | synonymous_variant | 0.12 |
rpoA | 3877818 | c.690A>G | synonymous_variant | 0.17 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.12 |
rpoA | 3878061 | c.447G>C | synonymous_variant | 0.15 |
rpoA | 3878070 | c.438T>C | synonymous_variant | 0.13 |
rpoA | 3878079 | c.429C>T | synonymous_variant | 0.13 |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.13 |
rpoA | 3878143 | p.Gly122Asp | missense_variant | 0.12 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.11 |
rpoA | 3878197 | p.Glu104Ala | missense_variant | 0.11 |
rpoA | 3878283 | p.Glu75Asp | missense_variant | 0.11 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.11 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.11 |
rpoA | 3878301 | c.207C>G | synonymous_variant | 0.12 |
rpoA | 3878310 | c.198G>T | synonymous_variant | 0.12 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.13 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.11 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.17 |
rpoA | 3878364 | c.144A>C | synonymous_variant | 0.2 |
rpoA | 3878367 | c.141C>G | synonymous_variant | 0.21 |
rpoA | 3878370 | c.138T>C | synonymous_variant | 0.21 |
rpoA | 3878373 | c.135G>C | synonymous_variant | 0.2 |
rpoA | 3878391 | c.117T>G | synonymous_variant | 0.13 |
rpoA | 3878400 | c.108T>C | synonymous_variant | 0.12 |
rpoA | 3878424 | c.84G>C | synonymous_variant | 0.14 |
rpoA | 3878433 | c.75G>C | synonymous_variant | 0.15 |
rpoA | 3878436 | c.72A>G | synonymous_variant | 0.11 |
rpoA | 3878442 | c.66G>C | synonymous_variant | 0.11 |
clpC1 | 4038842 | c.1863G>T | synonymous_variant | 0.14 |
clpC1 | 4038845 | c.1858_1860delTCGinsAGC | synonymous_variant | 0.14 |
clpC1 | 4038860 | c.1845G>T | synonymous_variant | 0.14 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.12 |
clpC1 | 4039264 | p.Asp481His | missense_variant | 0.12 |
clpC1 | 4039283 | c.1422C>T | synonymous_variant | 0.11 |
clpC1 | 4039286 | c.1419T>G | synonymous_variant | 0.15 |
clpC1 | 4039292 | c.1413C>T | synonymous_variant | 0.18 |
clpC1 | 4039316 | p.Glu463Asp | missense_variant | 0.19 |
clpC1 | 4039319 | c.1386T>A | synonymous_variant | 0.19 |
clpC1 | 4039322 | c.1383T>G | synonymous_variant | 0.18 |
clpC1 | 4039328 | c.1377A>G | synonymous_variant | 0.2 |
clpC1 | 4039336 | c.1369C>T | synonymous_variant | 0.17 |
clpC1 | 4039338 | p.Thr456Gln | missense_variant | 0.15 |
clpC1 | 4039346 | p.Arg453Ser | missense_variant | 0.21 |
clpC1 | 4039360 | p.Ser449Arg | missense_variant | 0.24 |
clpC1 | 4039361 | c.1344C>T | synonymous_variant | 0.24 |
clpC1 | 4039391 | c.1314T>C | synonymous_variant | 0.12 |
clpC1 | 4039397 | c.1308A>G | synonymous_variant | 0.12 |
clpC1 | 4039733 | c.972G>C | synonymous_variant | 0.11 |
clpC1 | 4039739 | c.966C>G | synonymous_variant | 0.14 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.1 |
clpC1 | 4039769 | c.936C>T | synonymous_variant | 0.12 |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.12 |
clpC1 | 4039805 | c.900C>T | synonymous_variant | 0.12 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.11 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.12 |
clpC1 | 4040042 | c.663C>T | synonymous_variant | 0.12 |
clpC1 | 4040057 | c.648C>T | synonymous_variant | 0.12 |
clpC1 | 4040087 | c.618G>T | synonymous_variant | 0.17 |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 0.17 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326951 | p.Ala175Ser | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4408006 | p.Val66Ala | missense_variant | 0.11 |