Rv0006 - c.1623C>T
Drug resistance types
65 Sensitive
2 RR-TB
57 HR-TB
3 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 22 |
| lineage7;lineage2.2.1.2 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1 | 8 |
| lineage4.9;lineage4.6.3 | 1 |
| 40 | |
| lineage4 | 55 |
| lineage2.2.1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage2.1 | 1 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage4.1.2.1 | 6 |
| lineage3 | 3 |
| lineage4.1 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9.1 | 1 |
| La2 | 1 |
| lineage4.4.1.1;lineage1.2.2.1 | 1 |
| lineage6.1.1 | 2 |
| lineage5.1.2 | 1 |
| La1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 153 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16157123 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR176778 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR176779 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675265 | Other | lineage4 | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | ERR176651 | HR-TB | None | ERR4815552 | HR-TB | lineage2.2.1.1 | None | ERR212125 | HR-TB | lineage4 | None | SRR3675510 | Other | None | SRR3675542 | Other | lineage4.9 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR2513438 | Sensitive | lineage4.1.2.1 | None | ERR4817998 | Other | lineage3 | None | ERR2446566 | Other | lineage4.1 | None | ERR2513862 | HR-TB | lineage4.9 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341315 | Sensitive | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341470 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045450 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044838 | Other | lineage4.9 | None | ERR502943 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046492 | Other | None | SRR6046802 | Other | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | ERR4831638 | Sensitive | None | ERR502524 | HR-TB | La2 | None | SRR7496471 | Sensitive | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323053 | HR-TB | None | ERR3283025 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063896 | Sensitive | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3283014 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283028 | Other | None | ERR349296 | Sensitive | lineage4 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797063 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR473332 | Other | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798431 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4811493 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR736865 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736875 | HR-TB | lineage4 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9119669 | HR-TB | None | SRR1172310 | HR-TB | None | ERR987722 | HR-TB | None | ERR9787014 | Other | lineage6.1.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423629 | MDR-TB | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None |
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