Rv2043c - p.Thr160Pro
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
1 HR-TB
109 MDR-TB
39 Pre-XDR-TB
11 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 93 |
| lineage4.6.4 | 12 |
| lineage4.2.1 | 4 |
| lineage4.3.2 | 18 |
| lineage4.3.4.1 | 1 |
| lineage3 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.3 | 1 |
| lineage4.3.3 | 3 |
| lineage2.2.2 | 3 |
| lineage4.2.2.2 | 2 |
| lineage4.4.2 | 2 |
| lineage4.1.2.1 | 3 |
| lineage4 | 1 |
| lineage4.5 | 2 |
| lineage1.1.2 | 2 |
| lineage2.2;lineage4.3.2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage1.2.2.2;lineage4.1.2 | 1 |
| lineage4.1.1;lineage4.3.2 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1.1.3.3 | 1 |
| lineage4.1.2 | 2 |
| La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 162 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29356650 | MDR-TB | lineage2.2.1 | None | ERR9119563 | MDR-TB | lineage4.6.4 | None | SRR29539641 | Pre-XDR-TB | lineage4.2.1 | None | ERR4872164 | MDR-TB | lineage4.6.4 | None | ERR4827902 | MDR-TB | lineage2.2.1 | None | ERR4814503 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798630 | MDR-TB | lineage2.2.1 | None | ERR13285856 | MDR-TB | lineage2.2.1 | None | SRR29231327 | MDR-TB | lineage4.3.2 | None | SRR29539850 | MDR-TB | lineage2.2.1 | None | SRR9971214 | MDR-TB | lineage2.2.1 | None | ERR9119610 | MDR-TB | lineage4.6.4 | None | ERR5897085 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813614 | MDR-TB | lineage4.3.2 | None | ERR4872166 | MDR-TB | lineage4.6.4 | None | ERR11043051 | MDR-TB | lineage4.3.4.1 | None | SRR6964672 | Pre-XDR-TB | lineage3 | None | SRR18714896 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180396 | MDR-TB | lineage2.2.1 | None | SRR1140901 | MDR-TB | lineage2.2.1 | None | ERR4811662 | MDR-TB | lineage4.3.2 | pe | SRR14781891 | MDR-TB | lineage2.2.1 | None | ERR552982 | MDR-TB | lineage2.2.1 | None | ERR4872354 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813335 | MDR-TB | lineage4.3.2 | None | SRR5153816 | MDR-TB | lineage2.2.1 | None | ERR3287704 | MDR-TB | lineage4.3.2 | pe | ERR4811921 | MDR-TB | lineage4.3.2 | pe | SRR10380184 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707130 | MDR-TB | lineage4.3.2 | cd | ERR4812792 | MDR-TB | lineage4.3.2 | pe | ERR4813737 | MDR-TB | lineage4.3.2 | None | SRR21732111 | HR-TB | lineage2.2.1 | None | SAMN02350465 | MDR-TB | lineage2.2.1 | za | ERR1035353 | MDR-TB | lineage4.4.1.2 | br | ERR10762270 | MDR-TB | lineage2.2.1 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166106 | MDR-TB | lineage2.2.1 | None | ERR10762368 | MDR-TB | lineage2.2.1 | None | ERR4827579 | MDR-TB | lineage2.2.1 | None | ERR8773892 | MDR-TB | lineage4.3 | None | ERR4872216 | MDR-TB | lineage4.6.4 | None | ERR1035306 | Pre-XDR-TB | lineage4.3.3 | br | ERR4810477 | Pre-XDR-TB | lineage2.2.2 | cn | SRR27757531 | XDR-TB | lineage2.2.1 | None | SRR5153919 | MDR-TB | lineage2.2.1 | None | SRR11662207 | MDR-TB | lineage2.2.1 | None | ERR10762486 | MDR-TB | lineage2.2.1 | None | SRR3205963 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723567 | MDR-TB | lineage2.2.1 | cn | ERR4407496 | MDR-TB | lineage2.2.1 | None | ERR13284041 | MDR-TB | lineage2.2.1 | None | SRR29093650 | MDR-TB | lineage4.2.2.2 | None | SRR15316361 | MDR-TB | lineage4.4.2 | None | ERR9119533 | MDR-TB | lineage4.1.2.1 | None | SRR10040549 | Pre-XDR-TB | lineage2.2.2 | None | SRR20632811 | Pre-XDR-TB | lineage2.2.1 | None | SRR6964603 | MDR-TB | lineage3 | None | ERR4872174 | MDR-TB | lineage4.6.4 | None | ERR13260344 | MDR-TB | lineage4 | None | ERR13289472 | MDR-TB | lineage2.2.1 | None | ERR13285923 | MDR-TB | lineage2.2.1 | None | SRR1019140 | MDR-TB | lineage2.2.1 | None | ERR8650528 | MDR-TB | lineage2.2.1 | None | SRR29231713 | MDR-TB | lineage4.6.4 | None | ERR13249493 | MDR-TB | lineage4.5 | None | ERR4831522 | MDR-TB | lineage2.2.1 | pk | SRR6964563 | MDR-TB | lineage1.1.2 | None | SRR6964565 | MDR-TB | lineage1.1.2 | None | ERR15686441 | MDR-TB | lineage2.2.1 | None | ERR16022286 | MDR-TB | lineage2.2.1 | None | ERR11798629 | MDR-TB | lineage2.2.1 | None | ERR5865659 | MDR-TB | lineage4.3.3 | None | ERR4799012 | Pre-XDR-TB | lineage2.2.1 | in | ERR9119572 | MDR-TB | lineage4.6.4 | None | ERR8665777 | Pre-XDR-TB | lineage2.2.1 | None | ERR2864290 | MDR-TB | lineage2.2.1 | pt | ERR4813371 | MDR-TB | lineage2.2;lineage4.3.2 | pe | SRR22461667 | Pre-XDR-TB | lineage4.3.2 | None | ERR4813047 | RR-TB | lineage4.3.2 | None | ERR4813404 | MDR-TB | lineage4.3.2 | pe | SRR5153852 | MDR-TB | lineage2.2.1 | None | ERR2707101 | MDR-TB | lineage4.6.4 | cd | ERR4813403 | MDR-TB | lineage4.3.2 | pe | ERR4831012 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4813433 | MDR-TB | lineage4.3.2 | pe | SRR1180315 | MDR-TB | lineage2.2.1 | None | SRR27757532 | XDR-TB | lineage2.2.1 | None | ERR4818510 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865660 | MDR-TB | lineage4.3.3 | None | SAMEA2535049 | MDR-TB | lineage2.2.1 | uz | ERR067618 | Pre-XDR-TB | lineage2.2.1 | ru | SRR3205964 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034704 | MDR-TB | lineage4.3.2 | pe | SRR28888058 | XDR-TB | lineage2.2.1 | None | SRR16088210 | Pre-XDR-TB | lineage2.2.1 | None | SRR28888076 | XDR-TB | lineage2.2.1 | None | ERR4827904 | MDR-TB | lineage2.2.1 | None | SRR22175261 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR3105752 | MDR-TB | lineage1.2.2.2;lineage4.1.2 | None | SRR28888072 | XDR-TB | lineage2.2.1 | None | SRR11662548 | MDR-TB | lineage2.2.1 | None | ERR4872161 | MDR-TB | lineage4.6.4 | None | ERR12117982 | MDR-TB | lineage4.3.2 | None | ERR13285858 | MDR-TB | lineage2.2.1 | None | SRR29385482 | MDR-TB | lineage2.2.1.1 | None | SRR6831916 | MDR-TB | lineage2.2.1 | None | SRR1169110 | MDR-TB | lineage4.2.1 | None | SRR13355778 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR27757530 | XDR-TB | lineage2.2.1 | None | SRR14782041 | MDR-TB | lineage2.2.1 | None | ERR13249495 | MDR-TB | lineage4.5 | None | SRR25207090 | Pre-XDR-TB | lineage2.2.2 | None | ERR13292552 | MDR-TB | lineage2.2.1 | None | ERR8665778 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972376 | MDR-TB | lineage2.2.1 | None | SRR1166177 | MDR-TB | lineage4.2.1 | None | SRR6964510 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380066 | MDR-TB | lineage2.2.1 | None | ERR552983 | MDR-TB | lineage2.2.1 | None | ERR11641190 | MDR-TB | lineage2.2.1 | None | SAMN02584675 | MDR-TB | lineage4.2.1 | md | ERR4813120 | Pre-XDR-TB | lineage4.1.1;lineage4.3.2 | None | ERR3794545 | MDR-TB | lineage2.2.1 | None | SRR29539731 | MDR-TB | lineage2.2.1 | None | ERR4011970 | MDR-TB | lineage4.2.2.2 | None | SAMN02584642 | MDR-TB | lineage2.2.1 | md | SRR15316342 | MDR-TB | lineage4.4.2 | None | SRR28498375 | XDR-TB | lineage2.2.1 | None | SRR28888073 | XDR-TB | lineage2.2.1 | None | SRR28888074 | XDR-TB | lineage2.2.1 | None | SRR27757529 | XDR-TB | lineage2.2.1 | None | SRR28888057 | XDR-TB | lineage2.2.1 | None | ERR5897071 | Pre-XDR-TB | lineage2.2.1 | None | ERR5897078 | Pre-XDR-TB | lineage2.2.1;lineage4.9 | None | ERR5897107 | Pre-XDR-TB | lineage2.2.1 | None | ERR7910945 | MDR-TB | lineage2.2.1 | md | ERR7911078 | MDR-TB | lineage2.2.1 | md | ERR8665604 | Pre-XDR-TB | lineage2.2.1 | None | SRR10185951 | MDR-TB | lineage1.1.3.3 | None | SRR1168998 | MDR-TB | lineage2.2.1 | None | SRR22461608 | MDR-TB | lineage4.3.2 | None | ERR2516756 | MDR-TB | lineage4.1.2 | gb | ERR4816398 | Pre-XDR-TB | lineage2.2.1 | gb | SRR5709763 | Pre-XDR-TB | lineage2.2.1 | th | SRR5710026 | Pre-XDR-TB | lineage2.2.1 | th | ERR9119564 | MDR-TB | lineage4.6.4 | None | SAMN02585979 | MDR-TB | lineage2.2.1 | za | SRR14296208 | Other | La1.8.1 | None | SRR10306020 | MDR-TB | lineage2.2.1 | None | ERR4872127 | MDR-TB | lineage4.1.2.1 | None | SRR28394027 | MDR-TB | lineage4.1.2.1 | None | ERR9119566 | MDR-TB | lineage4.6.4 | None | ERR552982_ERR552983 | MDR-TB | lineage2.2.1 | None | SRR3743400 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813553 | Pre-XDR-TB | lineage4.3.2 | None | SRR3105735 | Pre-XDR-TB | lineage4.1.2 | None | ERR4827455 | MDR-TB | lineage2.2.1 | None | SRR10380186 | MDR-TB | lineage2.2.1 | None | ERR4872315 | Pre-XDR-TB | lineage2.2.1 | None | SRR6511639 | MDR-TB | lineage2.2.1 | None | SRR24256272 | Pre-XDR-TB | lineage2.2.1 | None |
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